├── .gitignore
├── LICENSE
├── comocma-apidocs
├── apidocs.css
├── bootstrap.min.css
├── classIndex.html
├── comocma.__init__.html
├── comocma.__main__.html
├── comocma.como.CmaKernel.html
├── comocma.como.FitFun.html
├── comocma.como.IndicatorFront.html
├── comocma.como.Sofomore.html
├── comocma.como.html
├── comocma.html
├── comocma.hv.HyperVolume.html
├── comocma.hv.MultiList.Node.html
├── comocma.hv.MultiList.html
├── comocma.hv.html
├── comocma.nondominatedarchive.NonDominatedList.html
├── comocma.nondominatedarchive.html
├── comocma.sofomore_logger.SofomoreDataLogger.html
├── comocma.sofomore_logger.html
├── index.html
├── moduleIndex.html
├── nameIndex.html
├── objects.inv
├── pydoctor.js
└── undoccedSummary.html
├── comocma-epydocs
├── api-objects.txt
├── class-tree.html
├── comocma-module.html
├── comocma-pysrc.html
├── comocma.__main__-module.html
├── comocma.__main__-pysrc.html
├── comocma.como-module.html
├── comocma.como-pysrc.html
├── comocma.como.CmaKernel-class.html
├── comocma.como.FitFun-class.html
├── comocma.como.IndicatorFront-class.html
├── comocma.como.Sofomore-class.html
├── comocma.hv-module.html
├── comocma.hv-pysrc.html
├── comocma.hv.HyperVolume-class.html
├── comocma.hv.MultiList-class.html
├── comocma.hv.MultiList.Node-class.html
├── comocma.nondominatedarchive-module.html
├── comocma.nondominatedarchive-pysrc.html
├── comocma.nondominatedarchive.NonDominatedList-class.html
├── comocma.sofomore_logger-module.html
├── comocma.sofomore_logger-pysrc.html
├── comocma.sofomore_logger.SofomoreDataLogger-class.html
├── crarr.png
├── epydoc.css
├── epydoc.js
├── frames.html
├── help.html
├── identifier-index.html
├── index.html
├── module-tree.html
├── redirect.html
├── toc-comocma-module.html
├── toc-comocma.__main__-module.html
├── toc-comocma.como-module.html
├── toc-comocma.hv-module.html
├── toc-comocma.nondominatedarchive-module.html
├── toc-comocma.sofomore_logger-module.html
├── toc-everything.html
└── toc.html
├── comocma
├── LICENSE
├── __init__.py
├── __main__.py
├── como.py
├── hv.py
├── nondominatedarchive.py
└── sofomore_logger.py
├── index.html
├── readme.md
├── readme.txt
├── readme_images
├── cma-example.png
├── divers.png
└── front.png
└── setup.py
/.gitignore:
--------------------------------------------------------------------------------
1 |
2 | .DS_Store
3 | comocma/.DS_Store
4 | *.dat
5 | *.aux
*.log
6 | *.out
*.synctex.gz
7 | .ipynb_checkpoints
8 | __pycache__
9 | cma_kernels
10 | outsofomore
--------------------------------------------------------------------------------
/LICENSE:
--------------------------------------------------------------------------------
1 | The BSD 3-Clause License
2 | Copyright (c) 2019 Inria
3 | Authors: Cheikh Toure and Nikolaus Hansen, 2019
4 |
5 | Redistribution and use in source and binary forms, with or without
6 | modification, are permitted provided that the following conditions
7 | are met:
8 |
9 | 1. Redistributions of source code must retain the above copyright and
10 | authors notice, this list of conditions and the following disclaimer.
11 |
12 | 2. Redistributions in binary form must reproduce the above copyright
13 | and authors notice, this list of conditions and the following
14 | disclaimer in the documentation and/or other materials provided with
15 | the distribution.
16 |
17 | 3. Neither the name of the copyright holder nor the names of its
18 | contributors nor the authors names may be used to endorse or promote
19 | products derived from this software without specific prior written
20 | permission.
21 |
22 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
23 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
24 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
25 | AUTHORS OR CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES
26 | OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
27 | ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
28 | DEALINGS IN THE SOFTWARE.
29 |
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/comocma-apidocs/classIndex.html:
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1 |
2 |
4 |
5 |
6 | Class Hierarchy
7 |
8 |
9 |
10 |
11 |
12 |
22 |
23 |
24 |
25 |
26 |
Class Hierarchy
27 |
28 |
29 |
30 |
cma.CMAEvolutionStrategy
comocma.como.CmaKernel - inheriting from the cma.CMAEvolutionStrategy class, by adding the property incumbent, the attributes objective_values and _last_offspring_f_values.
comocma.como.FitFun - Define a callable multiobjective function from single objective ones. Example: fitness = comocma.FitFun(cma.ff.sphere, lambda x: cma.ff.sphere(x-1)).
comocma.nondominatedarchive.NonDominatedList - A list of objective values in an empirical Pareto front, meaning that no point strictly domminates another one in all objectives.
32 |
33 |
34 | Part of comocma
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
This module contains the implementation of the Multiobjective framework called
46 | Sofomore, and its instantiation with cma-es to obtain COMO-CMA-ES, defined in
47 | the paper [Toure, Cheikh, et al. "Uncrowded Hypervolume Improvement:
48 | COMO-CMA-ES and the Sofomore framework."
49 | GECCO'19-Genetic and Evolutionary Computation Conference. 2019.].
50 |
51 | Only the bi-objective framework is functional and has been thoroughly tested.
52 |
53 |
54 | :Author: Cheikh Toure and Nikolaus Hansen, 2019
55 |
56 | :License: BSD 3-Clause, see LICENSE file.
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 | API Documentation for comocma, generated by pydoctor at 2020-04-18 16:47:06.
73 |
74 |
75 |
inheriting from the cma.CMAEvolutionStrategy class, by adding the property
46 | incumbent, the attributes objective_values and _last_offspring_f_values.
is given and inverse is None, the initial mean is not
101 | consistent with x0 in that transform(mean) does not
102 | equal to x0 unless transform(mean) equals mean.
103 |
104 |
sigma0
105 |
initial standard deviation. The problem variables should
106 | have been scaled, such that a single standard deviation
107 | on all variables is useful and the optimum is expected to
108 | lie within about x0 +- 3*sigma0. See also options
109 | scaling_of_variables. Often one wants to check for
110 | solutions close to the initial point. This allows,
111 | for example, for an easier check of consistency of the
112 | objective function and its interfacing with the optimizer.
113 | In this case, a much smaller sigma0 is advisable.
114 |
inopts
115 |
options, a dictionary with optional settings,
116 | see class cma.CMAOptions.
Define a callable multiobjective function from single objective ones.
46 | Example:
47 | fitness = comocma.FitFun(cma.ff.sphere, lambda x: cma.ff.sphere(x-1)).
32 |
33 |
34 | Part of comocma
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
This module contains the implementation of the Multiobjective framework called
46 | Sofomore, and its instantiation with cma-es to obtain COMO-CMA-ES, defined in
47 | the paper [Toure, Cheikh, et al. "Uncrowded Hypervolume Improvement:
48 | COMO-CMA-ES and the Sofomore framework."
49 | GECCO'19-Genetic and Evolutionary Computation Conference. 2019.].
50 |
51 | Only the bi-objective framework is functional and has been thoroughly tested.
Factory function that produces `len(x_starts)` instances of type `cmaKernel`.
134 |
135 | Parameters
136 | ----------
137 | x_starts : TYPE list or list of lists or list of or ndarrays or ndarray
138 | The initial means of the returned cmas.
139 | sigma_starts : TYPE float or list of floats
140 | The initial step-sizes of the returned cmas.
141 | inopts : TYPE dict or list of dicts, optional
142 | The cmas' options.
143 | number_created_kernels : TYPE int, optional
144 | Used as the starting index for the returned cma's names.
145 | The values of the options' key 'verb_filenameprefix' rely upon this
146 | argument `number_created_kernels`.
147 |
148 | Returns
149 | -------
150 | A list of `CmaKernel` instances.
151 |
152 | Example::
153 | >>> import comocma
154 | >>> dimension = 10
155 | >>> sigma0 = 0.5
156 | >>> num_kernels = 11
157 | >>> cma_opts = {'tolx': 10**-4, 'popsize': 32}
158 | >>> list_of_solvers = comocma.get_cmas(num_kernels * [dimension * [0]], sigma0, cma_opts)
159 |
160 | produce `num_kernels` cma instances.
Used for the update order of a Sofomore instance.
180 | Example::
181 | moes = Sofomore(list_of_instances, reference_point, {'update_order': sort_random})
182 | randomly picks the kernels to update in the `tell` method of Sofomore.
Example::
246 | moes = Sofomore(list_of_instances, reference_point, {'update_order': sort_even_odds})
247 | pick the kernels with even indices before the kernels with odd indices in
248 | the `tell` method of Sofomore.
Example::
268 | moes = Sofomore(list_of_instances, reference_point, {'update_order': sort_odds_even})
269 | pick the kernels with odd indices before the kernels with even indices
270 | in the `tell` method of Sofomore.
271 |
272 |
273 |
274 |
275 |
276 | API Documentation for comocma, generated by pydoctor at 2020-04-18 16:47:06.
277 |
278 |
279 |
This module contains the implementation of the Multiobjective framework called
46 | Sofomore, and its instantiation with cma-es to obtain COMO-CMA-ES, defined in
47 | the paper [Toure, Cheikh, et al. "Uncrowded Hypervolume Improvement:
48 | COMO-CMA-ES and the Sofomore framework."
49 | GECCO'19-Genetic and Evolutionary Computation Conference. 2019.].
50 |
51 | Only the bi-objective framework is functional and has been thoroughly tested.
52 |
53 |
54 | :Author: Cheikh Toure and Nikolaus Hansen, 2019
55 |
56 | :License: BSD 3-Clause, see LICENSE file.
Hypervolume computation based on variant 3 of the algorithm in the paper:
46 | C. M. Fonseca, L. Paquete, and M. Lopez-Ibanez. An improved dimension-sweep
47 | algorithm for the hypervolume indicator. In IEEE Congress on Evolutionary
48 | Computation, pages 1157-1163, Vancouver, Canada, July 2006.
Inserts 'node' at the position it had in all lists in [0, 'index'[ before it was removed. This method assumes that the next and previous nodes of the node that is reinserted are in the list.
Inserts 'node' at the position it had in all lists in [0, 'index'[
259 | before it was removed. This method assumes that the next and previous
260 | nodes of the node that is reinserted are in the list.
261 |
262 |
263 |
264 |
265 |
266 | API Documentation for comocma, generated by pydoctor at 2020-04-18 16:47:06.
267 |
268 |
269 |
cma.interfaces.OOOptimizer:
87 | abstract base class for an Object Oriented Optimizer interface.
88 |
89 |
cma.evolution_strategy.CMAEvolutionStrategy:
90 | CMA-ES stochastic optimizer class with ask-and-tell interface.
91 |
92 |
comocma.como.CmaKernel:
93 | inheriting from the `cma.CMAEvolutionStrategy` class, by adding the
94 | property `incumbent`, the attributes `objective_values` and
95 | `_last_offspring_f_values`.
96 |
97 |
98 |
99 |
comocma.como.Sofomore:
100 | Sofomore framework for multiobjective optimization, with the
101 | ask-and-tell interface.
102 |
103 |
104 |
105 |
list:
106 | list() -> new empty list list(iterable) -> new list
107 | initialized from iterable's items
108 |
109 |
comocma.nondominatedarchive.NonDominatedList:
110 | A list of objective values in an empirical Pareto front, meaning
111 | that no point strictly domminates another one in all objectives.
112 |
59 |
60 | This module contains the implementation of the Multiobjective framework called
61 | Sofomore, and its instantiation with cma-es to obtain COMO-CMA-ES, defined in
62 | the paper [Toure, Cheikh, et al. "Uncrowded Hypervolume Improvement:
63 | COMO-CMA-ES and the Sofomore framework."
64 | GECCO'19-Genetic and Evolutionary Computation Conference. 2019.].
65 |
66 | Only the bi-objective framework is functional and has been thoroughly tested.
67 |
68 |
69 | :Author: Cheikh Toure and Nikolaus Hansen, 2019
70 |
71 | :License: BSD 3-Clause, see LICENSE file.
72 |
73 |
74 |
75 |
76 |
Version:
77 | 0.5.1
78 |
79 |
Author:
80 | Cheikh Toure and Nikolaus Hansen
81 |
comocma.como: This module contains the implementation of the Multiobjective framework called
106 | Sofomore, and its instantiation with cma-es to obtain COMO-CMA-ES, defined in
107 | the paper [Toure, Cheikh, et al.
80 | NonDominatedList
81 | A list of objective values in an empirical Pareto front, meaning
82 | that no point strictly domminates another one in all objectives.
83 |
This document contains the API (Application Programming Interface)
56 | documentation for this project. Documentation for the Python
57 | objects defined by the project is divided into separate pages for each
58 | package, module, and class. The API documentation also includes two
59 | pages containing information about the project as a whole: a trees
60 | page, and an index page.
61 |
62 |
Object Documentation
63 |
64 |
Each Package Documentation page contains:
65 |
66 |
A description of the package.
67 |
A list of the modules and sub-packages contained by the
68 | package.
69 |
A summary of the classes defined by the package.
70 |
A summary of the functions defined by the package.
71 |
A summary of the variables defined by the package.
72 |
A detailed description of each function defined by the
73 | package.
74 |
A detailed description of each variable defined by the
75 | package.
76 |
77 |
78 |
Each Module Documentation page contains:
79 |
80 |
A description of the module.
81 |
A summary of the classes defined by the module.
82 |
A summary of the functions defined by the module.
83 |
A summary of the variables defined by the module.
84 |
A detailed description of each function defined by the
85 | module.
86 |
A detailed description of each variable defined by the
87 | module.
88 |
89 |
90 |
Each Class Documentation page contains:
91 |
92 |
A class inheritance diagram.
93 |
A list of known subclasses.
94 |
A description of the class.
95 |
A summary of the methods defined by the class.
96 |
A summary of the instance variables defined by the class.
97 |
A summary of the class (static) variables defined by the
98 | class.
99 |
A detailed description of each method defined by the
100 | class.
101 |
A detailed description of each instance variable defined by the
102 | class.
103 |
A detailed description of each class (static) variable defined
104 | by the class.
105 |
106 |
107 |
Project Documentation
108 |
109 |
The Trees page contains the module and class hierarchies:
110 |
111 |
The module hierarchy lists every package and module, with
112 | modules grouped into packages. At the top level, and within each
113 | package, modules and sub-packages are listed alphabetically.
114 |
The class hierarchy lists every class, grouped by base
115 | class. If a class has more than one base class, then it will be
116 | listed under each base class. At the top level, and under each base
117 | class, classes are listed alphabetically.
118 |
119 |
120 |
The Index page contains indices of terms and
121 | identifiers:
122 |
123 |
The term index lists every term indexed by any object's
124 | documentation. For each term, the index provides links to each
125 | place where the term is indexed.
126 |
The identifier index lists the (short) name of every package,
127 | module, class, method, function, variable, and parameter. For each
128 | identifier, the index provides a short description, and a link to
129 | its documentation.
130 |
131 |
132 |
The Table of Contents
133 |
134 |
The table of contents occupies the two frames on the left side of
135 | the window. The upper-left frame displays the project
136 | contents, and the lower-left frame displays the module
137 | contents:
138 |
139 |
140 |
141 |
142 | Project Contents...
143 |
144 | API Documentation Frame
145 |
146 |
147 |
148 |
149 | Module Contents ...
150 |
151 |
152 |
153 |
154 |
The project contents frame contains a list of all packages
155 | and modules that are defined by the project. Clicking on an entry
156 | will display its contents in the module contents frame. Clicking on a
157 | special entry, labeled "Everything," will display the contents of
158 | the entire project.
159 |
160 |
The module contents frame contains a list of every
161 | submodule, class, type, exception, function, and variable defined by a
162 | module or package. Clicking on an entry will display its
163 | documentation in the API documentation frame. Clicking on the name of
164 | the module, at the top of the frame, will display the documentation
165 | for the module itself.
166 |
167 |
The "frames" and "no frames" buttons below the top
168 | navigation bar can be used to control whether the table of contents is
169 | displayed or not.
170 |
171 |
The Navigation Bar
172 |
173 |
A navigation bar is located at the top and bottom of every page.
174 | It indicates what type of page you are currently viewing, and allows
175 | you to go to related pages. The following table describes the labels
176 | on the navigation bar. Note that not some labels (such as
177 | [Parent]) are not displayed on all pages.
178 |
179 |
180 |
181 |
Label
182 |
Highlighted when...
183 |
Links to...
184 |
185 |
[Parent]
186 |
(never highlighted)
187 |
the parent of the current package
188 |
[Package]
189 |
viewing a package
190 |
the package containing the current object
191 |
192 |
[Module]
193 |
viewing a module
194 |
the module containing the current object
195 |
196 |
[Class]
197 |
viewing a class
198 |
the class containing the current object
199 |
[Trees]
200 |
viewing the trees page
201 |
the trees page
202 |
[Index]
203 |
viewing the index page
204 |
the index page
205 |
[Help]
206 |
viewing the help page
207 |
the help page
208 |
209 |
210 |
The "show private" and "hide private" buttons below
211 | the top navigation bar can be used to control whether documentation
212 | for private objects is displayed. Private objects are usually defined
213 | as objects whose (short) names begin with a single underscore, but do
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215 | "__pprint", and "epydoc.epytext._tokenize"
216 | are private objects; but "re.sub",
217 | "__init__", and "type_" are not. However,
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comocma: This module contains the implementation of the Multiobjective framework called
59 | Sofomore, and its instantiation with cma-es to obtain COMO-CMA-ES, defined in
60 | the paper [Toure, Cheikh, et al.
61 |
comocma.como: This module contains the implementation of the Multiobjective framework called
64 | Sofomore, and its instantiation with cma-es to obtain COMO-CMA-ES, defined in
65 | the paper [Toure, Cheikh, et al.
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23 | documentation for the object with the given fully-qualified
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