├── Bitvectors.c ├── Bitvectors.h ├── CommandLineParser.c ├── CommandLineParser.h ├── Common.c ├── Common.h ├── HashTable.c ├── HashTable.h ├── Makefile ├── MrFAST.c ├── MrFAST.h ├── Output.c ├── Output.h ├── README.md ├── Reads.c ├── Reads.h ├── RefGenome.c ├── RefGenome.h └── baseFAST.c /Bitvectors.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Bitvectors.c -------------------------------------------------------------------------------- /Bitvectors.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Bitvectors.h -------------------------------------------------------------------------------- /CommandLineParser.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/CommandLineParser.c -------------------------------------------------------------------------------- /CommandLineParser.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/CommandLineParser.h -------------------------------------------------------------------------------- /Common.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Common.c -------------------------------------------------------------------------------- /Common.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Common.h -------------------------------------------------------------------------------- /HashTable.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/HashTable.c -------------------------------------------------------------------------------- /HashTable.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/HashTable.h -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Makefile -------------------------------------------------------------------------------- /MrFAST.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/MrFAST.c -------------------------------------------------------------------------------- /MrFAST.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/MrFAST.h -------------------------------------------------------------------------------- /Output.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Output.c -------------------------------------------------------------------------------- /Output.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Output.h -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/README.md -------------------------------------------------------------------------------- /Reads.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Reads.c -------------------------------------------------------------------------------- /Reads.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/Reads.h -------------------------------------------------------------------------------- /RefGenome.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/RefGenome.c -------------------------------------------------------------------------------- /RefGenome.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/RefGenome.h -------------------------------------------------------------------------------- /baseFAST.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CMU-SAFARI/GRIM/HEAD/baseFAST.c --------------------------------------------------------------------------------