├── Fig1 ├── A_Fig1.mat ├── Create_System_R.m ├── Integration_R_1_2_3dynamics.m ├── R_123model.m ├── dt_pert_R_1_2_3_h_0.5_alpha3_node5.mat ├── dt_pert_R_1_2_3_h_1_alpha0.5_node5.mat ├── dt_pert_R_1_2_3_h_1_alpha1_node5.mat ├── pathlength.m ├── perturb_R_1_2_3.m ├── plot_ts_blue.m ├── plot_ts_green.m ├── plot_ts_red.m ├── trans_R_1_2_3_h_0.5_alpha3_node5.mat ├── trans_R_1_2_3_h_1_alpha0.5_node5.mat ├── trans_R_1_2_3_h_1_alpha1_node5.mat ├── transient_measure.m └── unperturb_R_1_2_3.m ├── How to use the codes.docx ├── Model ├── Integration E │ ├── Create_E_Equations.m │ ├── Integration_Edynamics.m │ ├── pathlength.m │ ├── perturb_E.m │ ├── perturb_measure.m │ ├── transient_measure.m │ └── unperturb_E.m ├── Integration M │ ├── Create_M_Equations.m │ ├── Integration_Mdynamics.m │ ├── pathlength.m │ ├── perturb_ECO.m │ ├── transient_measure.m │ └── unperturb_ECO.m ├── Integration N │ ├── Create_System_neural_network.m │ ├── Integration_NNdynamics.m │ ├── pathlength.m │ ├── perturb_NN.m │ ├── perturb_measure.m │ ├── transient_measure.m │ └── unperturb_NN.m ├── Integration P │ ├── Create_Sys_PD.m │ ├── Integration_PDdynamics.m │ ├── pathlength.m │ ├── perturb_PD.m │ ├── perturb_measure.m │ ├── transient_measure.m │ └── unperturb_PD.m ├── Integration R_1 │ ├── Create_System_R_1.m │ ├── Integration_R_1dynamics.m │ ├── pathlength.m │ ├── perturb_R_1.m │ ├── perturb_measure.m │ ├── transient_measure.m │ └── unperturb_R_1.m └── Integration R_2 │ ├── Create_System_R_2.m │ ├── Integration_R_2dynamics.m │ ├── pathlength.m │ ├── perturb_R_2.m │ ├── perturb_measure.m │ ├── transient_measure.m │ └── unperturb_R_2.m ├── Networks ├── ATN.mat ├── A_300_gamma3.mat ├── Brain.mat ├── ECO1.mat ├── ECO2.mat ├── ER.mat ├── Epinions.mat ├── Epoch.mat ├── PPI1.mat ├── PPI2.mat ├── PPI3.mat ├── PPI4.mat ├── SF.mat ├── SF1.mat ├── SF2.mat └── UCIonline.mat ├── Plot ├── Blue_P_T_vsT_Tau_vs_S_TvsL_TvsUniv_dist.m ├── Fig3g-l │ ├── axis_figure_setting_blue.m │ ├── axis_figure_setting_green.m │ ├── axis_figure_setting_red.m │ ├── function_log_bin.m │ ├── lin_bin_plot_blue.m │ ├── lin_bin_plot_green.m │ ├── lin_bin_plot_red.m │ ├── log_bin_plot_red.m │ ├── plot_ptau_tau_theta_negative.m │ ├── plot_ptau_tau_theta_positive.m │ └── plot_ptau_tau_theta_zero.m ├── Fig4a-c │ ├── axis_setting_blue.m │ ├── axis_setting_green.m │ ├── axis_setting_red.m │ ├── bins1.m │ ├── plot_tau_vs_S_blue.m │ ├── plot_tau_vs_S_green.m │ ├── plot_tau_vs_S_red.m │ ├── tau_vs_S_blue.m │ ├── tau_vs_S_green.m │ └── tau_vs_S_red.m ├── Fig4d-f │ ├── All_plot_T_vs_L.m │ ├── Blue_plot_T_vs_L.m │ ├── Green_plot_T_vs_L.m │ ├── Red_plot_T_vs_L.m │ ├── T_vs_D_linbin.m │ ├── axis_setting_blue_R1_N.m │ ├── axis_setting_green_E_M.m │ ├── axis_setting_red_R2_P.m │ ├── bins.m │ └── linearbinn.m ├── Fig6i-k │ ├── Blue_R_1_N_Universal_Dist.m │ ├── Green_M_E_Universal_Dist.m │ ├── Plot_Blue_R_1_N_T_vs_Universal_Dist.m │ ├── Plot_Green_M_E_T_vs_Universal_Dist.m │ ├── Plot_Red_R_2_P_T_vs_Universal_Dist.m │ ├── Red_P_Universal_Dist.m │ ├── Red_R_2_Universal_Dist.m │ ├── adj2adjL.m │ ├── adj2edgeL.m │ ├── adjL2adj.m │ ├── adjL2edgeL.m │ ├── axis_setting_blue_univ_dist.m │ ├── axis_setting_green_univ_dist.m │ ├── axis_setting_red_univ_dist.m │ ├── bins1.m │ ├── dijkstra.m │ ├── edgeL2adj.m │ ├── edgeL2adjL.m │ ├── linearbin.m │ ├── pathlength.m │ ├── purge.m │ ├── tau_vs_L_blue.m │ ├── tau_vs_L_green.m │ └── tau_vs_L_red_green.m ├── Green_P_T_vsT_Tau_vs_S_TvsL_TvsUniv_dist.m ├── Red_PD_P_T_vsT_Tau_vs_S_TvsL_TvsUniv_dist.m └── Red_R2_P_T_vsT_Tau_vs_S_TvsL_TvsUniv_dist.m ├── README.md ├── SpreadingDynamics.m ├── Switch_integration.m ├── Switch_networks.m └── Switch_plot.m /Fig1/A_Fig1.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CRHENS/Spatio-Temporal-/HEAD/Fig1/A_Fig1.mat -------------------------------------------------------------------------------- /Fig1/Create_System_R.m: 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