├── .gitignore ├── LICENSE ├── README.md ├── bpipe.config ├── data └── inc_seq_test_read.fa ├── inc-seq.py ├── pipeline.bpipe └── utils ├── PBDAGCON.LICENSE ├── __init__.py ├── aligners.py ├── blastn2bed.py ├── blastn2blasr.py ├── blastn_wrapper.sh ├── blosum80.mat ├── buildConsensus.py ├── filter_best_match.py ├── findUnit.py ├── graphmap ├── pbdagcon ├── poa ├── sam2blasr.py └── sam2blasr2.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSB5/INC-Seq/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSB5/INC-Seq/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 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