├── .gitattributes ├── .github └── pull_request_template.md ├── .gitignore ├── .travis.yml ├── .vscode ├── settings.json └── tasks.json ├── CONTRIBUTING.md ├── Dockerfile ├── FAQ.md ├── GETTING_STARTED.md ├── LICENSE.txt ├── README.md ├── STYLEGUIDE.md ├── csc-overrides ├── 404.html ├── assets │ ├── images │ │ ├── logo.png │ │ └── logo.svg │ ├── javascripts │ │ ├── extra.js │ │ └── feedback.js │ ├── snippets │ │ ├── auth-update-ssh.md │ │ ├── glossaries │ │ │ ├── cloud.md │ │ │ └── hpc.md │ │ ├── mfa-update.md │ │ ├── placeholders │ │ │ └── archive.md │ │ ├── rahti2_announcement.md │ │ ├── rahti2_rwx_storage.md │ │ ├── rahtibeta_announcement.md │ │ └── ref │ │ │ ├── a.md │ │ │ └── b.md │ └── stylesheets │ │ ├── admonition.css │ │ ├── announcement.css │ │ ├── banner.css │ │ ├── breadcrumbs.css │ │ ├── content.css │ │ ├── extra.css │ │ ├── feedback.css │ │ ├── footer.css │ │ ├── header.css │ │ ├── pre-header.css │ │ ├── quick-links.css │ │ ├── scheme.css │ │ ├── sensitive-data.css │ │ ├── sidebars.css │ │ ├── tags.css │ │ ├── title.css │ │ ├── variables.css │ │ └── video.css ├── home.html ├── main.html └── partials │ ├── announcement.html │ ├── breadcrumbs-debug.html │ ├── breadcrumbs.html │ ├── feedback.html │ ├── footer.html │ ├── integrations │ └── analytics │ │ └── custom.html │ └── pre-header.html ├── development ├── Containerfile.development ├── conda-docs-base-1.0.yaml ├── conda-docs-base-2.0.yaml ├── conda-docs-base-latest.yaml ├── entrypoint.bash └── packages.txt ├── docs ├── accounts │ ├── account-lifecycle.md │ ├── billing.md │ ├── fmi.md │ ├── how-to-access-mahti-large-partition.md │ ├── how-to-add-members-to-project.md │ ├── how-to-add-service-access-for-project.md │ ├── how-to-apply-for-billing-units.md │ ├── how-to-change-password.md │ ├── how-to-create-new-project.md │ ├── how-to-create-new-user-account.md │ ├── how-to-increase-disk-quotas.md │ ├── how-to-manage-user-information.md │ ├── how-to-manage-your-project.md │ ├── how-to-view-billing-unit-usage.md │ ├── images │ │ ├── large │ │ │ ├── change-password.png │ │ │ ├── csc-login.png │ │ │ ├── forgot-password.png │ │ │ ├── landing-page.png │ │ │ ├── my-profile.png │ │ │ └── virtu-haka-or-csc.png │ │ └── small │ │ │ ├── authentication-method-mid.png │ │ │ ├── change-password-mid.png │ │ │ ├── change-password.png │ │ │ ├── csc-login-mid.png │ │ │ ├── csc-login.png │ │ │ ├── description-of-processing-activities_MyCSC.png │ │ │ ├── forgot-password-mid.png │ │ │ ├── forgot-password.png │ │ │ ├── haka-one-time-code.jpeg │ │ │ ├── landing-page-mid.png │ │ │ ├── landing-page.png │ │ │ ├── mfa-enable-mfa-banner.png │ │ │ ├── mfa-enabled.png │ │ │ ├── mfa-enter-verification-code.png │ │ │ ├── mfa-profile-banner.png │ │ │ ├── mfa-scan-qr-code.png │ │ │ ├── mfa1.png │ │ │ ├── mfa2.png │ │ │ ├── mfa3.png │ │ │ ├── mfa4.png │ │ │ ├── mfa5.png │ │ │ ├── my-profile-mid.png │ │ │ ├── my-profile.png │ │ │ ├── project_extension1.png │ │ │ ├── project_extension2.png │ │ │ ├── virtu-haka-or-csc-mid.png │ │ │ └── virtu-haka-or-csc.png │ ├── index.md │ ├── mfa.md │ ├── strong-identification.md │ └── when-your-project-handles-personal-data.md ├── apps │ ├── abaqus.md │ ├── accelerated-visualization.md │ ├── alphafold.md │ ├── amber.md │ ├── ames-stereo.md │ ├── ams-gui.md │ ├── ams.md │ ├── ansys.md │ ├── arcgis.md │ ├── bamtools.md │ ├── bayescan.md │ ├── bioconda.md │ ├── bioperl.md │ ├── biopython.md │ ├── blast.md │ ├── blender.md │ ├── bowtie2.md │ ├── braker.md │ ├── bs.md │ ├── bwa.md │ ├── by_discipline.md │ ├── by_license.md │ ├── by_system.md │ ├── cProfile.md │ ├── cd-hit.md │ ├── chipster_genomes.md │ ├── cirq-on-iqm.md │ ├── cloudcompare.md │ ├── compute-san.md │ ├── comsol.md │ ├── cosmors.md │ ├── cp2k.md │ ├── cryosparc.md │ ├── csd.md │ ├── cuda-gdb.md │ ├── cutadapt.md │ ├── ddt.md │ ├── desktop.md │ ├── diamond.md │ ├── discovery-studio.md │ ├── edirect.md │ ├── elmer.md │ ├── emboss.md │ ├── exonerate.md │ ├── fastqc.md │ ├── force.md │ ├── freebayes.md │ ├── gaussian.md │ ├── gdal.md │ ├── gdb.md │ ├── geoconda.md │ ├── gold.md │ ├── gpaw.md │ ├── grace.md │ ├── grass.md │ ├── gromacs.md │ ├── hmmer.md │ ├── humann.md │ ├── hyperqueue.md │ ├── idl.md │ ├── index.md │ ├── interpro.md │ ├── ipyrad.md │ ├── itac.md │ ├── jax.md │ ├── julia-jupyter.md │ ├── julia.md │ ├── jupyter-for-courses.md │ ├── jupyter.md │ ├── kraken.md │ ├── krona.md │ ├── lammps.md │ ├── lastools.md │ ├── lazypipe.md │ ├── macs2.md │ ├── maestro.md │ ├── materialsstudio.md │ ├── matlab.md │ ├── megahit.md │ ├── metaphlan.md │ ├── minimap2.md │ ├── mira.md │ ├── molden.md │ ├── molpro.md │ ├── mothur.md │ ├── mrbayes.md │ ├── namd.md │ ├── ncu.md │ ├── nextflow.md │ ├── nomachine.md │ ├── nsys.md │ ├── nvprof.md │ ├── nwchem.md │ ├── octave.md │ ├── openbabel.md │ ├── opendronemap.md │ ├── openfoam.md │ ├── orca.md │ ├── otb.md │ ├── palm.md │ ├── pannzer.md │ ├── paraview.md │ ├── pcl.md │ ├── pdal.md │ ├── pdb.md │ ├── pennylane.md │ ├── picard.md │ ├── plumed.md │ ├── prokka.md │ ├── python-data.md │ ├── python.md │ ├── pytorch.md │ ├── qe.md │ ├── qgis.md │ ├── qiime.md │ ├── qiskit-on-iqm.md │ ├── qiskit.md │ ├── r-env-for-gis.md │ ├── r-env.md │ ├── rapids.md │ ├── raxml.md │ ├── roary.md │ ├── rstudio.md │ ├── saga-gis.md │ ├── sagemath.md │ ├── salmon.md │ ├── samtools.md │ ├── scalasca.md │ ├── seismic-unix.md │ ├── sen2cor.md │ ├── sen2mosaic.md │ ├── seqtk.md │ ├── snakemake.md │ ├── snap.md │ ├── sofi3d.md │ ├── spades.md │ ├── spark.md │ ├── stacks.md │ ├── star.md │ ├── starccm+.md │ ├── structure.md │ ├── tensorboard.md │ ├── tensorflow.md │ ├── tmolex.md │ ├── tophat.md │ ├── trimmomatic.md │ ├── trinity.md │ ├── turbomole.md │ ├── vasp.md │ ├── velvet.md │ ├── virusdetect.md │ ├── visit.md │ ├── vmd.md │ ├── vscode.md │ ├── vtune.md │ ├── whiteboxtools.md │ ├── wtdbg2.md │ ├── xhmm.md │ └── zonation.md ├── cloud │ ├── dbaas │ │ ├── advanced.md │ │ ├── application-credentials.md │ │ ├── backups.md │ │ ├── cli.md │ │ ├── databases.md │ │ ├── firewalls.md │ │ ├── flavors.md │ │ ├── getting-started.md │ │ ├── index.md │ │ ├── mariadb-accessing.md │ │ ├── mariadb-permissions.md │ │ ├── mariadb.md │ │ ├── operations.md │ │ ├── postgres-accessing.md │ │ ├── postgres-extensions.md │ │ ├── postgres-permissions.md │ │ ├── postgres-versions.md │ │ ├── postgresql.md │ │ ├── rebuild-database.md │ │ ├── resize-volume.md │ │ ├── security-guides.md │ │ ├── web-interface.md │ │ └── what-is-dbaas.md │ ├── img │ │ ├── 4cat-docker-compose.png │ │ ├── 4cat-rahti.png │ │ ├── 4cat.png │ │ ├── Addwebhook.png │ │ ├── Apache-test-page.png │ │ ├── BU-calculation.drawio.svg │ │ ├── CopyLoginCommand.png │ │ ├── Create-RoleBinding.png │ │ ├── Create-new-volume.png │ │ ├── Create-port-unspecified.png │ │ ├── CreateSnapshot.png │ │ ├── CreateWebhookSecret.png │ │ ├── Create_PersistentVolumeClaim.png │ │ ├── Create_role_binding.png │ │ ├── Creating.png │ │ ├── EnterSnapshotDetails.png │ │ ├── GFS2.drawio.svg │ │ ├── GitHub-new-oauth-app.png │ │ ├── GitHubWebhook.png │ │ ├── ImageStreams.png │ │ ├── Kubernetes.drawio.svg │ │ ├── Labels-webui.png │ │ ├── OCFS2.drawio.svg │ │ ├── Quotas_and_LimitRanges_4.png │ │ ├── Rahti-landing.png │ │ ├── Rahti-registry.png │ │ ├── Scale-down.png │ │ ├── Unable-to-create-volume.png │ │ ├── Volumesnapshot.png │ │ ├── action.png │ │ ├── addHorizontalAutoscaler.png │ │ ├── addHorizontalPodAutoscalerDialog.png │ │ ├── airflow.png │ │ ├── attached_to.png │ │ ├── bitnami-nginx-deploy.png │ │ ├── cat1.jpg │ │ ├── celery-worker.png │ │ ├── cert-manager.png │ │ ├── cli-menu.png │ │ ├── cli-page.png │ │ ├── cli_help_menu.png │ │ ├── cli_help_menu_3.7.png │ │ ├── cli_help_menu_4.png │ │ ├── click-deploymentConfig.png │ │ ├── click-project-details.png │ │ ├── click-project.png │ │ ├── click-template.png │ │ ├── cloud_dbaas_resize_volume_1.png │ │ ├── cloud_dbaas_resize_volume_2.png │ │ ├── cloud_pouta_vm_snapshot_1.svg │ │ ├── cloud_pouta_vm_snapshot_10.svg │ │ ├── cloud_pouta_vm_snapshot_11.svg │ │ ├── cloud_pouta_vm_snapshot_2.svg │ │ ├── cloud_pouta_vm_snapshot_3.svg │ │ ├── cloud_pouta_vm_snapshot_4.svg │ │ ├── cloud_pouta_vm_snapshot_5.svg │ │ ├── cloud_pouta_vm_snapshot_6.svg │ │ ├── cloud_pouta_vm_snapshot_7.svg │ │ ├── cloud_pouta_vm_snapshot_8.svg │ │ ├── cloud_pouta_vm_snapshot_9.svg │ │ ├── cloud_tutorial_ssh_key_pair.svg │ │ ├── cloud_tutorial_ssh_key_pair_import.png │ │ ├── cloud_tutorial_ssh_key_pair_powershell.png │ │ ├── container-orch2.drawio.svg │ │ ├── copy-login.png │ │ ├── create-port.png │ │ ├── create-route-nginx.png │ │ ├── create-volume-multiattach.png │ │ ├── create_docker_hub_secret.png │ │ ├── create_image.png │ │ ├── create_image2.png │ │ ├── create_image3.png │ │ ├── create_project1.png │ │ ├── create_project2.png │ │ ├── create_project_dialog_4.png │ │ ├── create_route.png │ │ ├── danger_keypairs.png │ │ ├── db-developer-catalog.png │ │ ├── delete_project.png │ │ ├── delete_project_menu.png │ │ ├── delete_project_name.png │ │ ├── deployment.png │ │ ├── editBuildConfig.png │ │ ├── editResourceLimits.png │ │ ├── editResourceLimitsDialog.png │ │ ├── edit_deployment.png │ │ ├── edit_update_strategy.png │ │ ├── epouta_connection.drawio.svg │ │ ├── flask-demo-homepage.png │ │ ├── image_streams_rahti4.png │ │ ├── instance-no-keypair.png │ │ ├── instances-keypair.png │ │ ├── jumphost_schema.png │ │ ├── jupyterhub.png │ │ ├── key-pair-page.png │ │ ├── key-pairs-listing.png │ │ ├── launch-instance.png │ │ ├── launch_instance_access_security.png │ │ ├── launch_instance_network.png │ │ ├── log-instance.png │ │ ├── login_registry.png │ │ ├── manage_users.png │ │ ├── minio.svg │ │ ├── mongo-nginx-app.drawio.svg │ │ ├── multi-attach.drawio.svg │ │ ├── negated_cat1.jpg │ │ ├── new-app-info.png │ │ ├── new_project_dialog.png │ │ ├── new_project_dialog_3.7.png │ │ ├── new_project_dialog_4.png │ │ ├── new_project_dialog_4_developer.png │ │ ├── nginx-configmap-deploy.png │ │ ├── oauth2-proxy-homepage.png │ │ ├── oauth2.png │ │ ├── openshift_cli_dialog.png │ │ ├── openshift_cli_dialog_3.7.png │ │ ├── openshift_cli_dialog_4.png │ │ ├── openshift_error_no_user.png │ │ ├── openshift_main_page.png │ │ ├── openshift_main_page_3.7.png │ │ ├── openshift_main_page_4.png │ │ ├── persistentvolumeclaim.png │ │ ├── picture-pipeline-diagram.png │ │ ├── pods-and-storage-emptydir.drawio.svg │ │ ├── pods-and-storage-pvc.drawio.svg │ │ ├── pods.png │ │ ├── pods2Autoscaler.png │ │ ├── podsAutoscaler.png │ │ ├── pouta_getting_started_video_poster.png │ │ ├── pouta_overview_web_login.png │ │ ├── project-network.png │ │ ├── project.png │ │ ├── project_page.png │ │ ├── project_page2.png │ │ ├── prometheus.png │ │ ├── proxy.drawio.svg │ │ ├── quota_details.png │ │ ├── rahti-catalog.png │ │ ├── rahti-network.drawio.svg │ │ ├── rahti_billing.png │ │ ├── rahti_login.png │ │ ├── rahti_login2.png │ │ ├── replicaset.png │ │ ├── rocketchat.svg │ │ ├── route-modes.drawio.svg │ │ ├── routeServicePod.drawio.svg │ │ ├── select-http.png │ │ ├── service.png │ │ ├── sidecar.drawio.svg │ │ ├── spark-logo-trademark.png │ │ ├── storage-options.drawio.svg │ │ ├── storage-page.png │ │ ├── trigger.drawio.svg │ │ ├── triggers.png │ │ ├── type-git.png │ │ ├── use_cached_image.png │ │ ├── vm_vs_container.png │ │ └── webhooks.png │ ├── index.md │ ├── noppe │ │ ├── concepts.md │ │ ├── data_persistence.md │ │ ├── guide_for_students.md │ │ ├── guide_for_teachers.md │ │ └── index.md │ ├── pouta │ │ ├── accounting.md │ │ ├── adding-images.md │ │ ├── additional-services.md │ │ ├── advanced.md │ │ ├── api-access.md │ │ ├── application-credentials.md │ │ ├── application-dev.md │ │ ├── command-line-tools.md │ │ ├── configuration.md │ │ ├── connecting-to-vm.md │ │ ├── ePouta-access.md │ │ ├── ephemeral-storage.md │ │ ├── getting-started.md │ │ ├── images.md │ │ ├── index.md │ │ ├── install-client.md │ │ ├── known-problems.md │ │ ├── launch-vm-from-web-gui.md │ │ ├── multiattach.md │ │ ├── networking.md │ │ ├── persistent-volumes.md │ │ ├── qemu-vm.md │ │ ├── security.md │ │ ├── snapshots.md │ │ ├── storage.md │ │ ├── tutorials │ │ │ ├── create-fixed-ip-for-Vm.md │ │ │ ├── create-jumphost.md │ │ │ ├── heat-orchestration.md │ │ │ ├── index.md │ │ │ ├── picture-pipeline.md │ │ │ ├── pouta-videos.md │ │ │ ├── ssh-key.md │ │ │ └── web-app-dev-cloud.md │ │ ├── vm-flavors-and-billing.md │ │ └── vm-lifecycle.md │ └── rahti │ │ ├── access.md │ │ ├── advanced.md │ │ ├── billing.md │ │ ├── catalog-docs.md │ │ ├── concepts.md │ │ ├── containers.md │ │ ├── ext_docs.md │ │ ├── images │ │ ├── Rahti1BU.drawio.svg │ │ ├── Rahti1Requests.drawio.svg │ │ ├── RahtiLimits.drawio.svg │ │ ├── RahtiRequest.drawio.svg │ │ ├── Using_Rahti_integrated_registry.md │ │ ├── creating.md │ │ ├── keeping_docker_images_small.md │ │ └── overview.md │ │ ├── index.md │ │ ├── moving-into.md │ │ ├── networking.md │ │ ├── rahti-migration.md │ │ ├── rahti-what-is.md │ │ ├── security-guide.md │ │ ├── storage │ │ ├── ephemeral.md │ │ ├── expand-volumes.md │ │ ├── index.md │ │ ├── objectstorage.md │ │ ├── persistent.md │ │ └── volume-snapshot.md │ │ ├── tutorials │ │ ├── 4cat.md │ │ ├── advanced-NetworkPolicies-networking.md │ │ ├── allow-pull-from-other-projects.md │ │ ├── annotations.md │ │ ├── ci_cd_introduction.md │ │ ├── connect-database-hpc.md │ │ ├── custom-domain.md │ │ ├── deploy_static_webserver_cli.md │ │ ├── deploy_static_webserver_webconsole.md │ │ ├── email.md │ │ ├── http-redirector.md │ │ ├── index.md │ │ ├── kustomize.md │ │ ├── multi-stage-builds.md │ │ ├── oauth2.md │ │ ├── pod-affinity.md │ │ ├── sidecar_proxy_authentication.md │ │ ├── web-app-dev-cloud.md │ │ ├── webhooks.md │ │ └── yaml_introduction.md │ │ └── usage │ │ ├── cli.md │ │ ├── getting_started.md │ │ └── projects_and_quota.md ├── computing │ ├── allas.md │ ├── available-systems.md │ ├── compiling-lumi.md │ ├── compiling-mahti.md │ ├── compiling-puhti.md │ ├── connecting │ │ ├── index.md │ │ ├── ssh-keys.md │ │ ├── ssh-unix.md │ │ └── ssh-windows.md │ ├── containers │ │ ├── creating.md │ │ ├── overview.md │ │ ├── run-existing.md │ │ └── tykky.md │ ├── debugging.md │ ├── disk.md │ ├── hpc-billing.md │ ├── hpc-libraries.md │ ├── index.md │ ├── installing.md │ ├── lumi-vs-mahti.md │ ├── lustre.md │ ├── modules.md │ ├── performance.md │ ├── quantum-computing │ │ ├── helmi │ │ │ ├── fiqci-partition.md │ │ │ ├── first-quantum-job.md │ │ │ ├── helmi-from-lumi.md │ │ │ ├── helmi-projects.md │ │ │ ├── helmi-specs.md │ │ │ └── running-on-helmi.md │ │ ├── kvasi │ │ │ ├── kvasi-billing.md │ │ │ └── kvasi.md │ │ └── overview.md │ ├── running │ │ ├── array-jobs.md │ │ ├── batch-job-partitions.md │ │ ├── creating-job-scripts-mahti.md │ │ ├── creating-job-scripts-puhti.md │ │ ├── example-job-scripts-mahti.md │ │ ├── example-job-scripts-puhti.md │ │ ├── fireworks.md │ │ ├── getting-started.md │ │ ├── interactive-usage.md │ │ ├── performance-checklist.md │ │ ├── submitting-jobs.md │ │ └── throughput.md │ ├── systems-mahti.md │ ├── systems-puhti.md │ ├── systems-roihu.md │ ├── usage-policy.md │ └── webinterface │ │ ├── accelerated-visualization.md │ │ ├── apps.md │ │ ├── connecting.md │ │ ├── desktop.md │ │ ├── file-browser.md │ │ ├── index.md │ │ ├── job-composer.md │ │ ├── julia-on-jupyter.md │ │ ├── jupyter-for-courses.md │ │ ├── jupyter.md │ │ ├── matlab.md │ │ ├── mlflow.md │ │ ├── project-view.md │ │ ├── rstudio.md │ │ ├── shell.md │ │ ├── tensorboard.md │ │ └── vscode.md ├── data │ ├── Allas │ │ ├── accessing_allas.md │ │ ├── allas-examples.md │ │ ├── allas-nextcloud.md │ │ ├── allas_batchjobs.md │ │ ├── allas_encryption.md │ │ ├── allas_lumi.md │ │ ├── allas_project_example.md │ │ ├── img │ │ │ ├── allas-access-flavors.png │ │ │ ├── allas_projects_and_buckets.PNG │ │ │ ├── cyberduck_bookmark.jpg │ │ │ ├── cyberduck_bookmark_info.PNG │ │ │ ├── cyberduck_bookmark_info.jpg │ │ │ ├── cyberduck_connect.PNG │ │ │ ├── cyberduck_connect.jpg │ │ │ ├── cyberduck_create_bookmark.PNG │ │ │ ├── rc-file-example20190121-b.png │ │ │ └── warning-30x30.png │ │ ├── index.md │ │ ├── introduction.md │ │ ├── terms_and_concepts.md │ │ └── using_allas │ │ │ ├── a_backup.md │ │ │ ├── a_commands.md │ │ │ ├── allas-ui.md │ │ │ ├── common_use_cases.md │ │ │ ├── cyberduck.md │ │ │ ├── directory_object_error.md │ │ │ ├── error_messages.md │ │ │ ├── img │ │ │ ├── Allas-UI-bucket.png │ │ │ ├── Allas-UI-dashboard.png │ │ │ ├── Allas-UI-login.png │ │ │ ├── Allas-UI-main.png │ │ │ ├── Allas-UI-share.png │ │ │ ├── Allas-UI-shared.png │ │ │ ├── Allas-UI-upload1.png │ │ │ ├── Allas-UI-upload2.png │ │ │ ├── Allas_screenshot_delete.png │ │ │ ├── Allas_screenshot_public.png │ │ │ ├── Allas_screenshot_upload.png │ │ │ └── allas_screenshot_create_container.png │ │ │ ├── python_boto3.md │ │ │ ├── python_swift.md │ │ │ ├── rclone.md │ │ │ ├── rclone_local.md │ │ │ ├── s3_client.md │ │ │ ├── swift_client.md │ │ │ └── web_client.md │ ├── datasets │ │ ├── best-encryption-practices.md │ │ ├── datamanagement.md │ │ ├── dataset-sources.md │ │ ├── hosting-datasets-at-CSC.md │ │ ├── index.html │ │ ├── metadata-and-documentation.md │ │ ├── publishing-datasets.md │ │ ├── sourcing-datasets.md │ │ └── spatial-data-in-csc-computing-env.md │ ├── ida │ │ └── using_ida.md │ ├── index.md │ ├── kaivos │ │ ├── kaivos-account.md │ │ ├── kaivos_batch_job.md │ │ ├── kaivos_client_in_puhti.md │ │ ├── kaivos_import.md │ │ ├── kaivos_perl.md │ │ ├── kaivos_remote.md │ │ └── overview.md │ ├── moving │ │ ├── copy_allas_ida.md │ │ ├── disk_mount.md │ │ ├── funet.md │ │ ├── graphical_transfer.md │ │ ├── img │ │ │ ├── etsin-download-options.png │ │ │ └── etsin-download.png │ │ ├── index.md │ │ ├── rsync.md │ │ ├── scp.md │ │ ├── tar_ssh.md │ │ ├── web-interface.md │ │ └── wget.md │ └── sensitive-data │ │ ├── creating_containers.md │ │ ├── csc-sd-services.pub │ │ ├── data-processing-form.docx │ │ ├── federatedega.md │ │ ├── fega-general-information.docx │ │ ├── fega-submission.md │ │ ├── findata-permit.md │ │ ├── images │ │ ├── MyCSC │ │ │ ├── HowToGetStarted_SD_Project_Manager.png │ │ │ ├── HowToGetStarted_SD_Project_Member.png │ │ │ ├── MyCSC_AddMembers.png │ │ │ ├── MyCSC_AddResources.png │ │ │ ├── MyCSC_AddServices.png │ │ │ ├── MyCSC_MFA.png │ │ │ ├── MyCSC_NewProject.png │ │ │ └── MyCSC_PersonalDataHandling.png │ │ ├── apply │ │ │ ├── SDA_Uploader.png │ │ │ ├── SUP.png │ │ │ ├── SUP_Login.png │ │ │ ├── apply_application.png │ │ │ ├── apply_catalogue.png │ │ │ ├── apply_dac.png │ │ │ ├── apply_dac_overview.png │ │ │ ├── apply_login.png │ │ │ ├── apply_overview.png │ │ │ ├── apply_state.png │ │ │ ├── desktop_gateway.png │ │ │ └── desktop_login.png │ │ ├── connect │ │ │ ├── SDConnect-login.png │ │ │ ├── SDConnect-upload.png │ │ │ ├── SDConnect_login.png │ │ │ ├── add-own-key.png │ │ │ ├── beta-account.png │ │ │ ├── beta-download.png │ │ │ ├── beta-login.png │ │ │ ├── beta-upload.png │ │ │ ├── collaborator-key.png │ │ │ ├── connect_encryption_large.png │ │ │ ├── connect_encryption_large_upload.png │ │ │ ├── connect_overviewnew.png │ │ │ ├── decryption.png │ │ │ ├── download.png │ │ │ ├── encryption.png │ │ │ ├── first-key.png │ │ │ ├── key-generation.png │ │ │ ├── reasearchdata.png │ │ │ ├── secondaryuse.png │ │ │ └── upload-folder.png │ │ ├── desktop │ │ │ ├── Desktop_LogInPage.png │ │ │ ├── Desktop_MFA.png │ │ │ ├── Desktop_authentication.png │ │ │ ├── SD-Desktop-Clipboard.png │ │ │ ├── SD-Desktop-Frontpage.png │ │ │ ├── airlock.png │ │ │ ├── data-gateway-le-1.png │ │ │ ├── data-gateway-le-2.png │ │ │ ├── data-gateway-le-3.png │ │ │ ├── desktop-access.png │ │ │ ├── desktop-apply.png │ │ │ ├── desktop-deleting.png │ │ │ ├── desktop-gateway-import.png │ │ │ ├── desktop-gateway-part1.png │ │ │ ├── desktop-gateway-part2.png │ │ │ ├── desktop-le-overview.png │ │ │ ├── desktop-reboot-rebuilt.png │ │ │ ├── desktop-register-exp.png │ │ │ ├── desktop-register-gateway.png │ │ │ ├── desktop-rstudio.png │ │ │ ├── desktop_launch.png │ │ │ ├── desktop_login-mfa1.png │ │ │ ├── desktop_overviewnew1.png │ │ │ ├── pause.png │ │ │ ├── sd-installer1.png │ │ │ ├── sd-installer2.png │ │ │ └── volume.png │ │ └── fega │ │ │ ├── FEGA_applicant_overview.png │ │ │ ├── desktop_gateway.png │ │ │ ├── desktop_launch.png │ │ │ ├── desktop_login.png │ │ │ ├── fega_apply.png │ │ │ ├── fega_dac.png │ │ │ ├── fega_dac_overview.png │ │ │ ├── fega_search.png │ │ │ └── fega_upload.png │ │ ├── index.md │ │ ├── r-in-sd-desktop.md │ │ ├── sd-access.md │ │ ├── sd-apply-access.md │ │ ├── sd-apply-approval.md │ │ ├── sd-apply-dac.md │ │ ├── sd-apply.md │ │ ├── sd-connect-and-a-commands.md │ │ ├── sd-connect-command-line-interface.md │ │ ├── sd-connect-delete.md │ │ ├── sd-connect-download.md │ │ ├── sd-connect-introduction-to-data-encryption.md │ │ ├── sd-connect-login.md │ │ ├── sd-connect-share-read-to-sd-desktop.md │ │ ├── sd-connect-share-tranfer-data.md │ │ ├── sd-connect-share-workspace.md │ │ ├── sd-connect-share.md │ │ ├── sd-connect-sharing-for-import.md │ │ ├── sd-connect-troubleshooting.md │ │ ├── sd-connect-upload.md │ │ ├── sd-desktop-access-vm.md │ │ ├── sd-desktop-access.md │ │ ├── sd-desktop-audited.md │ │ ├── sd-desktop-create.md │ │ ├── sd-desktop-export-commandline.md │ │ ├── sd-desktop-export.md │ │ ├── sd-desktop-login.md │ │ ├── sd-desktop-manage.md │ │ ├── sd-desktop-secondary-access-vm.md │ │ ├── sd-desktop-secondary-access.md │ │ ├── sd-desktop-secondary-create.md │ │ ├── sd-desktop-secondary-export.md │ │ ├── sd-desktop-secondary-login.md │ │ ├── sd-desktop-secondary-manage.md │ │ ├── sd-desktop-secondary-troubleshooting.md │ │ ├── sd-desktop-secondary-working.md │ │ ├── sd-desktop-singularity.md │ │ ├── sd-desktop-software.md │ │ ├── sd-desktop-troubleshooting.md │ │ ├── sd-desktop-working.md │ │ ├── sd-services-toc.md │ │ ├── sd-terminology.md │ │ ├── sd-use-case-new-user-project-manager.md │ │ ├── sd-use-case-new-user-project-member.md │ │ ├── sd_connect.md │ │ ├── sd_desktop.md │ │ ├── secondarydata-access.md │ │ ├── sequencing_center_tutorial.md │ │ ├── single-register-permit.md │ │ ├── single-register-submission.md │ │ ├── technical-organisational-sec-measures.pdf │ │ └── tutorials │ │ ├── auto-apptainer.md │ │ ├── backup_sd_desktop.md │ │ ├── decrypt-directory.md │ │ ├── podman-in-sd-desktop.md │ │ ├── postgresql.md │ │ ├── rstudio.md │ │ ├── sd-pythonlibs.md │ │ ├── vscode.md │ │ └── whisper.md ├── img │ ├── 3-2-1.drawio.png │ ├── ArcGIS_education_Institution_terms_and_conditions_2020-2022.pdf │ ├── CSC_2012_LOGO.png │ ├── CSC_LOGO_nega_pad.png │ ├── CSCfi_text.png │ ├── CSDLicenseAgreementTemplateNAC.pdf │ ├── Checklist_for_DMP_v1.png │ ├── Creative_commons_license_spectrum.png │ ├── Creative_commons_license_spectrum.svg │ ├── Docs_CSC_logo.png │ ├── Docs_CSC_logo.svg │ ├── MyCSC_text.png │ ├── ProcessWindowTotalview1.png │ ├── QuestionDoYouWantToStopJob1.png │ ├── README.txt │ ├── Research_text.png │ ├── RootTotalview.png │ ├── Save-Your-billing-units.png │ ├── Screenshot-Horizon-Instances-Bootsource.png │ ├── Screenshot-Instances+view+-+OpenStack+Dashboard+-+Chromium.png │ ├── Screenshot-puttygen-ppk2.png │ ├── Screenshot-puttygen-ppk2.png.1 │ ├── StartDebuggingSession1.png │ ├── StarupParameters1.png │ ├── VSCode_add_connection.png │ ├── VSCode_connect_to_host.png │ ├── VSCode_enable_remote_command.png │ ├── VSCode_remote_extension.png │ ├── VSCode_select_interpreter_tykky.png │ ├── WhenYourProjectHandlesPersonalData_GDPRdocument.png │ ├── Winscp1.jpg │ ├── Winscp2.jpg │ ├── adh.png │ ├── aggregators.png │ ├── alert.svg │ ├── amsgui_puhti_queue_settings.png │ ├── associate-floating-ip-menu.png │ ├── associate-floating-ip-menu.png.1 │ ├── attach_security_group_vm.png │ ├── attachrunning2.png │ ├── attachtouppersrun1.png │ ├── banners │ │ ├── banneri__summerhpc_800x164px_csc.fi.png │ │ ├── bioexcel-summer-school-on-biomolecular-simulations-2023.png │ │ ├── example-banner.png │ │ └── kesakoulu-2023_banner.png │ ├── benchpep-h.png │ ├── blender_workspace.png │ ├── breadcrumbs-debugging │ │ ├── breadcrumbs-debugging-is_page.png │ │ └── breadcrumbs-debugging-literal.png │ ├── bucket_information.png │ ├── cats_horizon.png │ ├── cellulose-amber.png │ ├── check-circle.svg │ ├── chemistry-logo.jpg │ ├── ci-cd.drawio.png │ ├── circle_icons │ │ ├── e0.svg │ │ ├── e100.svg │ │ ├── e25.svg │ │ ├── e33.svg │ │ ├── e50.svg │ │ ├── e66.svg │ │ ├── e75.svg │ │ ├── n0.svg │ │ ├── n100.svg │ │ ├── n25.svg │ │ ├── n33.svg │ │ ├── n50.svg │ │ ├── n66.svg │ │ ├── n75.svg │ │ ├── p0.svg │ │ ├── p100.svg │ │ ├── p25.svg │ │ ├── p33.svg │ │ ├── p50.svg │ │ ├── p66.svg │ │ ├── p75.svg │ │ ├── r0.svg │ │ ├── r100.svg │ │ ├── r25.svg │ │ ├── r33.svg │ │ ├── r50.svg │ │ ├── r66.svg │ │ └── r75.svg │ ├── cloud-stack.png │ ├── console-button-horizon.png │ ├── container-orchestration.png │ ├── cp2k-lumi.png │ ├── create-application-credential-cpouta.png │ ├── create-application-credential-epouta.png │ ├── create-application-credential.png │ ├── create-volume-horizon.png │ ├── create_security_group.png │ ├── crypt4sds.png │ ├── csc-logo.png │ ├── csc-quick-reference │ │ ├── .gitignore │ │ ├── CSCQuick Reference_Feb2023.docx │ │ ├── README.md │ │ ├── csc-quick-reference-2020-11-10.pdf │ │ ├── csc-quick-reference-2021-08-02.pdf │ │ ├── csc-quick-reference.pdf │ │ └── csc-quick-reference.tex │ ├── data-discoverymetadata.png │ ├── data-publications.png │ ├── data_types.png │ ├── dbaas-enable-root.png │ ├── default-security-group.png │ ├── emacs.jpg │ ├── eog.jpg │ ├── epouta-connection.jpg │ ├── file_per_process.png │ ├── file_striping.png │ ├── filezilla.png │ ├── funet_download.png │ ├── funet_upload.png │ ├── g16_perf_1.png │ ├── g16_perf_2.png │ ├── g16_perf_3.png │ ├── gabedit_1.png │ ├── gabedit_2.png │ ├── gabedit_3.png │ ├── git.drawio.png │ ├── heat-web-ui.png │ ├── helmi_mapping.png │ ├── helmi_with_jupyter_for_courses_gui.png │ ├── helmi_with_lumi_web.png │ ├── horizon-image-upload-dialog.png │ ├── horizon-image-upload2.png │ ├── horizon-snapshot-menu.png │ ├── host_profile_1.png │ ├── host_profile_2.png │ ├── host_profile_3.png │ ├── host_profile_4.png │ ├── instance-lifecycle-1.png │ ├── interactive_session_workspace_blender.png │ ├── julia-jupyter │ │ ├── julia-kernels.png │ │ ├── ood-application-menu.png │ │ ├── options-1.png │ │ ├── options-2.png │ │ └── options-3.png │ ├── lammps-bench.png │ ├── levels-of-openess_v1.png │ ├── levels-of-openness_v1.png │ ├── logo-128.svg │ ├── logo-16.svg │ ├── logo-32.svg │ ├── logo-64.svg │ ├── lustre.png │ ├── mahti_ccd.png │ ├── mahti_df.png │ ├── mahti_df_ex.png │ ├── mahti_node.png │ ├── mahti_numa.png │ ├── metadata-categories_v5.png │ ├── mlflow-front.png │ ├── mlflow-metrics.png │ ├── multidir-rmsd.svg │ ├── mycsc-create-new-project.png │ ├── mycsc-getting-started-with-csc-services-for-students-video-poster.png │ ├── namd-gpu.svg │ ├── namd-scaling.svg │ ├── nano.jpg │ ├── ood-csc-mfa.png │ ├── ood-edit-example.png │ ├── ood-files.png │ ├── ood-files2.png │ ├── ood-interactive-sessions.png │ ├── ood-save-settings.png │ ├── ood-saved-settings-page.png │ ├── ood-use-saved-settings.png │ ├── ood-vnc-connect.png │ ├── ood-vscode-cpptools-vsix.png │ ├── ood-vscode-install-cpptools.png │ ├── ood-vscode-settings.png │ ├── ood_cloud_storage_conf_table.png │ ├── ood_jupyter_additional_packages.png │ ├── ood_login.png │ ├── ood_main.png │ ├── ood_rclone1.png │ ├── ood_rclone2.png │ ├── pouta-accept-volume-transfer.png │ ├── pouta-add-rules-secgroup.png │ ├── pouta-assign-ip.png │ ├── pouta-create-key.png │ ├── pouta-create-server-group.png │ ├── pouta-instance-details.png │ ├── pouta-instances-terminal.png │ ├── pouta-launch-instance.jpg │ ├── pouta-launch-instance.jpg.1 │ ├── pouta-launch-instance.png │ ├── pouta-network-1.png │ ├── pouta-network-2.png │ ├── pouta-network-3.png │ ├── pouta-network-topo-1.png │ ├── pouta-openrc.png │ ├── pouta-router-1.png │ ├── pouta-router-2.png │ ├── pouta-server-groups.png │ ├── pouta-user-guide-keypairs.png │ ├── pouta-user-guide-keypairs.png.1 │ ├── pouta-volume-transfer-creation.png │ ├── pouta-web-console.png │ ├── pouta_application.jpg │ ├── pouta_application_development_1.png │ ├── pouta_project_selection.png │ ├── putty-key-file-authentication.png │ ├── putty-load.png │ ├── putty-saved-ppk.png │ ├── putty.png │ ├── pytorch-profiler1.png │ ├── qe-scaling.svg │ ├── restricted-api-ssh.png │ ├── restricted-ssh-security-group.png │ ├── risk-icon.svg │ ├── rstudio_change_directory.png │ ├── scale.drawio.png │ ├── sd-processing-big.png │ ├── sd-processing-small.png │ ├── sd-sharing-big.png │ ├── sd-sharing-small.png │ ├── sd_desktop_1.png │ ├── security_group.drawio.png │ ├── security_group_example.png │ ├── security_group_list.png │ ├── stacks-view.png │ ├── stateless_VM.drawio.png │ ├── stmv.png │ ├── tmolex_remote_settings.png │ ├── tykky_selection_jupyter.png │ ├── vim.jpg │ ├── volume-attach-horizon2.png │ ├── volume-expand-horizon1.png │ ├── websocat-diagram-4.drawio.png │ ├── websocat-diagram.drawio.png │ ├── whats-new │ │ ├── feedback-buttons.png │ │ ├── nav-after.png │ │ └── nav-before.png │ ├── windows │ │ ├── digital_signature_details.png │ │ ├── folder_options.png │ │ ├── git_bash.png │ │ ├── git_for_windows_mouse.png │ │ ├── git_for_windows_org.png │ │ ├── git_for_windows_setup.png │ │ ├── keepass_add_entry.png │ │ ├── keepass_auto-type.png │ │ ├── miniconda_latest_installers.png │ │ ├── miniconda_setup.png │ │ └── tasks.png │ ├── x-circle.svg │ └── youtube.png ├── index.md ├── ref.md └── support │ ├── accessibility.md │ ├── archives │ ├── asiakaskoulutus-customer-training.md │ ├── compute-server-announcements.md │ ├── lumi-users.md │ ├── mahti-users.md │ ├── pouta-users.md │ ├── puhti-users.md │ ├── rahti-users.md │ ├── sd-desktop-users.md │ └── tutkimus-research.md │ ├── contact.md │ ├── faq │ ├── DDos.md │ ├── addHorizontalAutoscaler.md │ ├── backup-postgres-allas.md │ ├── can-i-have-a-personal-project-or-bucket-in-allas.md │ ├── can-i-run-mpi-applications-on-pouta.md │ ├── can-i-use-csc-services-abroad.md │ ├── can-visitors-get-user-accounts.md │ ├── database.md │ ├── disk-quota-exceeded.md │ ├── do-you-offer-ssl-certificates.md │ ├── docker_hub_login.md │ ├── email_not_working.md │ ├── get-image-format.md │ ├── helm.md │ ├── how-can-I-give-access-to-other-people-to-my-vm-in-pouta.md │ ├── how-can-i-change-billing-project.md │ ├── how-can-i-share-my-data-with-others.md │ ├── how-do-i-know-how-much-resources-i-have-left.md │ ├── how-do-the-project-file-permissions-work.md │ ├── how-fast-is-the-pouta-network.md │ ├── how-is-the-computing-time-calculated.md │ ├── how-much-memory-my-job-needs.md │ ├── how-to-access-home-wrkdir-projdir-from-cpouta.md │ ├── how-to-change-organization.md │ ├── how-to-cite-csc.md │ ├── how-to-create-CSC-user-account.md │ ├── how-to-create-default-network-and-router-in-pouta.md │ ├── how-to-find-information-about-projects.md │ ├── how-to-get-Allas-s3-credentials.md │ ├── how-to-get-puhti-access.md │ ├── how-to-get-started-at-CSC.md │ ├── how-to-install-own-software.md │ ├── how-to-make-a-bucket-public.md │ ├── how-to-mount-os-bucket-for-cpouta.md │ ├── how-to-move-data-between-puhti-and-allas.md │ ├── how-to-resize-in-pouta.md │ ├── how-to-store-data-in-pouta.md │ ├── how-to-use-cpouta-for-remote-desktop.md │ ├── how-to-use-cpouta-gpu-for-rendering.md │ ├── i-cannot-login.md │ ├── img │ │ ├── Could_not_load_image_metadata.png │ │ ├── Failed_to_pull_image.png │ │ ├── cloud_pouta_resize_custome_disk.png │ │ ├── confirm_resize.png │ │ ├── post-creation-pouta.png │ │ ├── resize_button.png │ │ ├── resize_volume.png │ │ ├── resize_volume_window.png │ │ ├── resize_window.png │ │ ├── terminal.png │ │ ├── terminalPod1.png │ │ ├── terminalPod2.png │ │ └── terminalPod3.png │ ├── index.md │ ├── is-it-possible-to-make-data-in-allas-read-only.md │ ├── is-it-possible-to-move-data-in-allas-to-new-project.md │ ├── is-pouta-backed-up.md │ ├── is-there-a-glossary-of-the-acronyms-you-keep-using.md │ ├── issues-with-mfa.md │ ├── local_scratch_for_data_processing.md │ ├── new-password.md │ ├── oc-run.md │ ├── pouta-openstack-rescue-mode.md │ ├── python-package-trouble.md │ ├── rahti-ssl-certificates.md │ ├── rahti-udp.md │ ├── sensitive-data-access.md │ ├── sensitive-data-collaborative.md │ ├── sensitive-data-connect.md │ ├── sensitive-data-desktop-audited.md │ ├── sensitive-data-desktop.md │ ├── sensitive-data-encryption.md │ ├── sensitive-data-general.md │ ├── sensitive-data-legal.md │ ├── ssh-clone.md │ ├── ssh-keys-not-working.md │ ├── terminal-rahti-pod.md │ ├── transfer_data_rahti.md │ ├── what-are-volumes-and-how-to-use.md │ ├── what-does-it-cost-to-use-pouta.md │ ├── what-to-do-for-data-in-allas-after-project-ends.md │ ├── when-will-my-job-run.md │ ├── where-should-i-put-my-data.md │ ├── who-unknown-is-using-our-resources.md │ ├── why-cant-i-connect-to-my-vm-in-pouta.md │ ├── why-does-my-batch-job-fail.md │ ├── why-is-my-job-queueing-so-long.md │ ├── why-this-container-does-not-work.md │ └── x11-graphics.md │ ├── glossary.md │ ├── index.md │ ├── support-howto.md │ ├── training-material │ ├── geocomputing-learning-materials.md │ ├── geocomputing-seminars.md │ └── index.md │ ├── tutorials │ ├── MaxQuant-tutorial.md │ ├── bioapplications-puhti.md │ ├── bioconda-tutorial.md │ ├── biojobs-on-puhti.md │ ├── blender-tutorial.md │ ├── clean-up-data.md │ ├── cmdline-handson.md │ ├── conda.md │ ├── conda │ │ ├── bash_profile_extras.sh │ │ ├── c-ide.yaml │ │ ├── conda-docs-env-1.0.yaml │ │ ├── conda-docs-env-1.1.yaml │ │ ├── conda-docs-env-1.2.yaml │ │ └── conda-docs-env-freeze.yaml │ ├── da-guide.md │ ├── dask-python.md │ ├── env-guide │ │ ├── commands-for-data-processing.md │ │ ├── index.md │ │ ├── linux-bash-scripts.md │ │ ├── more-commands-for-managing-files.md │ │ ├── packing-and-compression-tools.md │ │ ├── text-and-image-processing.md │ │ ├── using-linux-in-command-line.md │ │ └── working-with-bash-shell.md │ ├── gabedit_gaussian.md │ ├── gis │ │ ├── eo_guide.md │ │ ├── gdal.md │ │ ├── gdal_cloud.md │ │ └── virtual-rasters.md │ ├── gpu-ml.md │ ├── gpu-shape.md │ ├── gromacs-throughput.md │ ├── hpc-quick.md │ ├── hyperparameter_search.md │ ├── index.md │ ├── julia.md │ ├── lue.md │ ├── lustre_performance.md │ ├── many.md │ ├── ml-data.md │ ├── ml-guide.md │ ├── ml-llm.md │ ├── ml-multi.md │ ├── ml-starting.md │ ├── ml-workflows.md │ ├── nextflow-tutorial.md │ ├── parallel-r.md │ ├── power-maestro.md │ ├── pukki_data_migration.md │ ├── python-usage-guide.md │ ├── remote-dev.md │ ├── rstudio-or-jupyter-notebooks.md │ ├── singularity-scratch.md │ ├── snakemake-puhti.md │ ├── student_quick.md │ ├── user-spack.md │ └── using_csc_env.md │ ├── whats-new.md │ └── wn │ ├── apps-new.md │ ├── cloud-new.md │ ├── comp-new.md │ ├── data-new.md │ └── training-new.md ├── hooks ├── archives.py └── preview.py ├── mkdocs.yml ├── nginx.conf ├── requirements.txt ├── scripts ├── convert.py ├── generate_alpha.sh ├── generate_by_system.sh ├── generate_glossary.sh ├── generate_new.sh ├── last_update.sh ├── report_changes.sh └── skip_system.txt └── tests ├── check_commands.sh ├── check_fixme.sh ├── check_internal_url.sh ├── check_licenses.sh ├── check_long_slurm_flags.sh ├── check_mail_commands.sh ├── check_masked.sh ├── check_partitions.sh ├── check_youtube_embed.sh ├── checkbuild.bash ├── common_functions.sh ├── misspell.bash ├── python_link_tests ├── .gitignore ├── check_broken_file_links.py ├── check_broken_section_links.py ├── check_hidden_files.py ├── docs.py ├── get_all_data.sh ├── link_check.py └── whitelist ├── run_tests.sh └── slurm_options.txt /.gitattributes: -------------------------------------------------------------------------------- 1 | # Normalize text file line endings to LF 2 | * text=auto 3 | -------------------------------------------------------------------------------- /.github/pull_request_template.md: -------------------------------------------------------------------------------- 1 | ## Proposed changes 2 | 3 | Briefly describe the changes you've made here. Remember to add a link to the [preview page](https://csc-guide-preview.2.rahtiapp.fi/origin/) of your branch. 4 | 5 | ## Checklist before requesting a review 6 | 7 | - [ ] I have followed the instructions in the [Contributing](https://github.com/CSCfi/csc-user-guide/blob/master/CONTRIBUTING.md) and [Styleguide](https://github.com/CSCfi/csc-user-guide/blob/master/STYLEGUIDE.md) documents. 8 | - [ ] My pull request passes the automated tests. If not, visit [pull requests at Travis CI](https://app.travis-ci.com/github/CSCfi/csc-user-guide/pull_requests) and have a look at the job log. 9 | - [ ] I have included a link to the appropriate [preview page](https://csc-guide-preview.2.rahtiapp.fi/origin/) (select your branch from the list). 10 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | *.swp 2 | *.bak 3 | *~ 4 | site/ 5 | *.log 6 | .DS_Store 7 | .idea/ 8 | __pycache__/ 9 | -------------------------------------------------------------------------------- /csc-overrides/404.html: -------------------------------------------------------------------------------- 1 | {% extends "main.html" %} 2 | {% block htmltitle %} 3 | Page not found - Docs CSC 4 | {% endblock htmltitle %} 5 | {% block content %} 6 | {% block breadcrumbs %} 7 | 11 | {% endblock breadcrumbs %} 12 |

Error 404: Page not found

13 |

Sorry, we couldn't find what you're looking for

14 |

Please retry looking for the content using the search function, or return to the Home page.

15 | {% endblock content %} 16 | -------------------------------------------------------------------------------- /csc-overrides/assets/images/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/csc-overrides/assets/images/logo.png -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/auth-update-ssh.md: -------------------------------------------------------------------------------- 1 | !!! warning "SSH login to Puhti and Mahti requires SSH keys since April 2025" 2 | Starting April 14 2025, SSH login to Puhti and Mahti will only work using 3 | SSH keys added in MyCSC. Password authentication and public keys stored in 4 | users' personal `~/.ssh/authorized_keys` file on the supercomputer will no 5 | longer work. This authentication method is already in use on LUMI. 6 | 7 | [Read the detailed instructions on setting up and using SSH keys](/computing/connecting/ssh-keys.md). 8 | -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/glossaries/cloud.md: -------------------------------------------------------------------------------- 1 | *[RAID]: Redundant Array of Inexpensive Disks 2 | -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/mfa-update.md: -------------------------------------------------------------------------------- 1 | !!! warning "Multi-factor authentication required to log in to Puhti and Mahti web interfaces" 2 | Since 22 April 2025, the web interfaces of Puhti and Mahti require 3 | multi-factor authentication (MFA). 4 | 5 | 1. [Test whether **Haka MFA** is already enabled for you](/accounts/mfa.md#mfa-instructions-for-users-logging-in-with-haka-credentials). 6 | * If your home organization has enabled MFA for Haka login, you do not need to activate MFA separately for CSC services. It is highly preferred that you use the Haka MFA of your home organization if possible. 7 | 2. [If Haka MFA is not enabled or if your home organization does not offer Haka, activate **CSC MFA** following these instructions](/accounts/mfa.md#how-to-activate-mfa). 8 | -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/placeholders/archive.md: -------------------------------------------------------------------------------- 1 | This page will be generated during deployment by 2 | the `hooks/archives.py` hook. If this message is visible 3 | after deployment, something has gone wrong. -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/rahti2_announcement.md: -------------------------------------------------------------------------------- 1 | !!! info-label 2 | 3 | *This version of Rahti is the new one.* Rahti 1 and Rahti 2 will co-exist until 21st October 2024. We strongly advise to use this version of Rahti. 4 | -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/rahti2_rwx_storage.md: -------------------------------------------------------------------------------- 1 | !!! error-label 2 | 3 | The only storage class currently available for now is *standard-csi*, which is ReadWriteOnce (RWO). This means that a Persistent Volume Claim can only be attached to a single Pod at a time. We are working on providing a new storage class that supports ReadWriteMany (RWX, multi attach). -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/rahtibeta_announcement.md: -------------------------------------------------------------------------------- 1 | !!! warning-label 2 | 3 | *This version of Rahti is deprecated.* The projects need to be migrated from Rahti 1 platform to the new Rahti 2 production platform by June 2024. Please consult the [migration guide](/cloud/rahti/rahti-migration.md) for more information. 4 | -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/ref/a.md: -------------------------------------------------------------------------------- 1 | Yes, this is _a.md_. 2 | -------------------------------------------------------------------------------- /csc-overrides/assets/snippets/ref/b.md: -------------------------------------------------------------------------------- 1 | Hello from _b.md_! 2 | -------------------------------------------------------------------------------- /csc-overrides/assets/stylesheets/announcement.css: -------------------------------------------------------------------------------- 1 | .announcement-banner { 2 | height: 4em; 3 | display: flex; 4 | align-items: center; 5 | justify-content: center; 6 | background-color: var(--csc-admonition--bg); 7 | color: var(--csc-admonition--fg); 8 | font-size: 1.25em; 9 | } 10 | 11 | .announcement-banner a { 12 | text-decoration: underline; 13 | transition: background-color 125ms; 14 | color: var(--md-typeset-a-color); 15 | } 16 | 17 | .announcement-banner a:hover { 18 | background-color: var(--md-accent-bg-color); 19 | } 20 | 21 | .announcement-banner > .announcement-icon { 22 | margin: 0 1.125em; 23 | height: 1.75em; 24 | aspect-ratio: 1/1; 25 | fill: var(--csc-admonition--fg); 26 | } 27 | 28 | .announcement-banner > .announcement-icon-end { 29 | transform: rotateY(180deg); 30 | } 31 | -------------------------------------------------------------------------------- /csc-overrides/assets/stylesheets/banner.css: -------------------------------------------------------------------------------- 1 | .csc-landing-banner { 2 | max-width: calc(var(--csc-content-width) / 2); 3 | margin: 1rem auto 2rem auto; 4 | } 5 | 6 | .csc-landing-banner a, 7 | .csc-landing-banner a:hover, 8 | .csc-landing-banner a:focus-within { 9 | color: unset !important; 10 | background-color: unset !important; 11 | text-decoration: none !important; 12 | } 13 | 14 | .csc-landing-banner img { 15 | transition: box-shadow .25s, 16 | border-radius .25s, 17 | filter .25s; 18 | border-radius: 2px; 19 | } 20 | 21 | .csc-landing-banner img:hover, 22 | .csc-landing-banner img:focus-within { 23 | box-shadow: var(--md-shadow-z3); 24 | border-radius: 4px; 25 | filter: saturate(.75) brightness(1.125); 26 | } 27 | -------------------------------------------------------------------------------- /csc-overrides/assets/stylesheets/breadcrumbs.css: -------------------------------------------------------------------------------- 1 | .csc-breadcrumbs { 2 | margin-bottom: .6rem; 3 | color: var(--md-default-fg-color); 4 | } 5 | 6 | .csc-breadcrumbs__link { 7 | color: var(--md-default-fg-color) !important; 8 | text-decoration: none !important; 9 | } 10 | 11 | .csc-breadcrumbs__link:is(:focus, :hover) { 12 | color: var(--md-accent-fg-color) !important; 13 | background-color: transparent !important; 14 | } 15 | 16 | .csc-breadcrumbs__link::after { 17 | content: ""; 18 | display: inline-block; 19 | width: 1.3em; 20 | height: 1.3em; 21 | margin: 0 .5em; 22 | transform: translateY(.22rem); 23 | mask-image: var(--md-nav-icon--next); 24 | -webkit-mask-image: var(--md-nav-icon--next); 25 | background-color: currentColor; 26 | color: inherit; 27 | } 28 | -------------------------------------------------------------------------------- /csc-overrides/assets/stylesheets/extra.css: -------------------------------------------------------------------------------- 1 | @import url(./variables.css); 2 | @import url(./scheme.css); 3 | 4 | @import url(./admonition.css); 5 | @import url(./announcement.css); 6 | @import url(./banner.css); 7 | @import url(./breadcrumbs.css); 8 | @import url(./content.css); 9 | @import url(./feedback.css); 10 | @import url(./footer.css); 11 | @import url(./pre-header.css); 12 | @import url(./header.css); 13 | @import url(./quick-links.css); 14 | @import url(./sidebars.css); 15 | @import url(./tags.css); 16 | @import url(./title.css); 17 | @import url(./video.css); 18 | 19 | @import url(./sensitive-data.css); 20 | -------------------------------------------------------------------------------- /csc-overrides/assets/stylesheets/sensitive-data.css: -------------------------------------------------------------------------------- 1 | .csc-sd-choose { 2 | margin-right: 16px; 3 | } 4 | -------------------------------------------------------------------------------- /csc-overrides/assets/stylesheets/tags.css: -------------------------------------------------------------------------------- 1 | .md-tag { 2 | border: 1px solid var(--md-primary-fg-color); 3 | color: var(--md-primary-fg-color) !important; 4 | background-color: transparent !important; 5 | border-radius: 15px; 6 | font-weight: 400 !important; 7 | text-decoration: none !important; 8 | } 9 | 10 | :target>.md-tag { 11 | color: var(--md-primary-bg-color) !important; 12 | background-color: var(--md-primary-fg-color) !important; 13 | } 14 | 15 | a.md-tag:is(:active, :hover) { 16 | background-color: var(--md-accent-bg-color) !important; 17 | } 18 | -------------------------------------------------------------------------------- /csc-overrides/assets/stylesheets/title.css: -------------------------------------------------------------------------------- 1 | .csc-landing-title { 2 | margin: 1rem auto 2rem 1rem; 3 | } 4 | 5 | .csc-landing-title > img { 6 | float: left; 7 | height: 62px; 8 | width: auto; 9 | margin-right: 10px; 10 | } 11 | 12 | .csc-landing-title > hgroup > h1 { 13 | margin: 0; 14 | line-height: 1; 15 | font-size: 42px; 16 | } 17 | 18 | .csc-landing-title > hgroup > p { 19 | margin: unset; 20 | line-height: 1; 21 | font-size: 20px; 22 | font-weight: var(--csc-font-weight--body); 23 | color: var(--c-tertiary-600); 24 | } 25 | -------------------------------------------------------------------------------- /csc-overrides/assets/stylesheets/video.css: -------------------------------------------------------------------------------- 1 | .md-typeset figure.video_container { 2 | margin-left: unset; 3 | } 4 | -------------------------------------------------------------------------------- /csc-overrides/main.html: -------------------------------------------------------------------------------- 1 | {% extends "base.html" %} 2 | {% block header %} 3 | {% include "partials/pre-header.html" %} 4 | {{ super() }} 5 | {% endblock header %} 6 | {% block hero %} 7 | {% if config.extra.announcement_visible is true %} 8 |
9 | {% include "partials/announcement.html" %} 10 |
11 | {% endif %} 12 | {% endblock hero %} 13 | {% block content %} 14 | {% block breadcrumbs %} 15 | {% include "partials/breadcrumbs.html" %} 16 | {% endblock breadcrumbs %} 17 | {{ super() }} 18 | {% endblock content %} 19 | -------------------------------------------------------------------------------- /csc-overrides/partials/pre-header.html: -------------------------------------------------------------------------------- 1 |
2 | 16 |
17 | -------------------------------------------------------------------------------- /development/Containerfile.development: -------------------------------------------------------------------------------- 1 | FROM rockylinux:8 2 | 3 | RUN dnf --assumeyes install \ 4 | epel-release \ 5 | python3.11 \ 6 | python3.11-pip \ 7 | git \ 8 | findutils &&\ 9 | dnf clean all 10 | 11 | WORKDIR /dev_dir 12 | COPY ./development/packages.txt ./packages.txt 13 | COPY ./requirements.txt ./requirements.txt 14 | 15 | ARG upgrade=false 16 | RUN if [ $upgrade = true ]; \ 17 | then requirements_file=packages.txt; \ 18 | else requirements_file=requirements.txt; \ 19 | fi; \ 20 | pip3 install \ 21 | --root-user-action=ignore \ 22 | --requirement=$requirements_file \ 23 | --use-pep517 \ 24 | --no-cache-dir 25 | 26 | WORKDIR /csc-user-guide 27 | 28 | COPY --chmod=500 ./development/entrypoint.bash /entrypoint.bash 29 | 30 | EXPOSE 8000 31 | 32 | ENTRYPOINT ["/entrypoint.bash"] 33 | -------------------------------------------------------------------------------- /development/conda-docs-base-1.0.yaml: -------------------------------------------------------------------------------- 1 | name: docs-env 2 | channels: 3 | - conda-forge 4 | dependencies: 5 | - python=3.8 6 | - pip=19 7 | -------------------------------------------------------------------------------- /development/conda-docs-base-2.0.yaml: -------------------------------------------------------------------------------- 1 | name: docs-env 2 | channels: 3 | - conda-forge 4 | dependencies: 5 | - python=3.11 6 | - pip=22 7 | -------------------------------------------------------------------------------- /development/conda-docs-base-latest.yaml: -------------------------------------------------------------------------------- 1 | conda-docs-base-2.0.yaml -------------------------------------------------------------------------------- /development/entrypoint.bash: -------------------------------------------------------------------------------- 1 | #! /usr/bin/env bash 2 | 3 | set -e 4 | 5 | declare -gr mkdocs_BIN='/usr/local/bin/mkdocs' \ 6 | mkdocs_IP='0.0.0.0' \ 7 | mkdocs_PORT='8000' 8 | 9 | mkdocs_serve() { 10 | $mkdocs_BIN 'serve' --dev-addr=${mkdocs_IP}:${mkdocs_PORT} "$@" 11 | } 12 | 13 | case $1 in 14 | '') 15 | $mkdocs_BIN 16 | ;; 17 | serve) 18 | shift 1 19 | mkdocs_serve "$@" 20 | ;; 21 | *) 22 | $mkdocs_BIN "$@" 23 | ;; 24 | esac 25 | -------------------------------------------------------------------------------- /development/packages.txt: -------------------------------------------------------------------------------- 1 | # The packages listed here are what we actually install, while the 2 | # file ../requirements.txt contains the current frozen environment. 3 | mkdocs-material 4 | mkdocs-git-revision-date-localized-plugin 5 | mkdocs-redirects 6 | mkdocs-section-index 7 | feedparser 8 | 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Native Conda installations sitting 10 | directly on the shared file system are ineffective and not recommended in HPC 11 | environments such as Puhti. Please use [Tykky](../computing/containers/tykky.md) 12 | installations instead to wrap your Conda environment within a container. [See 13 | a tutorial on this here](../support/tutorials/bioconda-tutorial.md). Note that 14 | some packages that were previously provided through Bioconda are now available 15 | as separate modules. 16 | -------------------------------------------------------------------------------- /docs/apps/by_system.md: -------------------------------------------------------------------------------- 1 | # AUTOMATICALLY GENERATED PAGE 2 | 3 | This page will be generated during deployment by 4 | the `scripts/generate_by_system.sh` script. If this message is visible 5 | after deployment, something has gone wrong. 6 | 7 | These headings are needed by the tests: 8 | 9 | ## Mahti 10 | 11 | ## Puhti 12 | 13 | ## LUMI 14 | 15 | ## Mahti web interface 16 | 17 | ## Puhti web interface 18 | 19 | ## LUMI web interface 20 | -------------------------------------------------------------------------------- /docs/apps/discovery-studio.md: -------------------------------------------------------------------------------- 1 | --- 2 | tags: 3 | - Academic 4 | --- 5 | 6 | # Discovery Studio 7 | 8 | Discovery Studio is a protein modeling program that contains tools to 9 | visualize, analyze, modify and simulate protein structures. 10 | 11 | !!! warning "Note" 12 | The national Discovery Studio license provided by CSC was discontinued in 2022. 13 | Since the beginning of 2023, it is no longer available. Please consider using 14 | [Maestro](maestro.md) instead. [Contact CSC Service Desk](../support/contact.md) 15 | if you need support in migrating your workflow. 16 | -------------------------------------------------------------------------------- /docs/apps/idl.md: -------------------------------------------------------------------------------- 1 | --- 2 | tags: 3 | - Academic 4 | --- 5 | 6 | # IDL 7 | 8 | Programming Language, Numeric Analysis, Manipulation and Visualization of Scientific Data 9 | 10 | ## Available 11 | 12 | * Puhti: 8.5.1, 8.8.2 13 | * Mahti: 8.5.1, 8.8.1, 8.8.3 14 | 15 | ## License 16 | 17 | CSC has an Academic license, i.e., it is meant for Academic research only. 18 | 19 | ## Usage 20 | 21 | ```bash 22 | module load idl 23 | ``` 24 | 25 | * Command line interface: `idl` 26 | * Graphical user interface: `idlde` 27 | 28 | ## More information 29 | 30 | * **Manuals on Puhti (pdf):** 31 | * `/appl/soft/math/idl/idl/help/pdf` 32 | * `/appl/soft/math/idl/idl85/help/pdf` 33 | * `/appl/soft/math/idl/idl882/idl88/help/pdf` 34 | * [**IDL Manuals on the Web**](https://www.nv5geospatialsoftware.com/docs/routines-135.html) 35 | -------------------------------------------------------------------------------- /docs/apps/index.md: -------------------------------------------------------------------------------- 1 | # AUTOMATICALLY GENERATED PAGE 2 | 3 | This page will be generated during deployment by 4 | the `scripts/generate_alpha.sh` script. If this message is visible 5 | after deployment, something has gone wrong. 6 | -------------------------------------------------------------------------------- /docs/apps/julia-jupyter.md: -------------------------------------------------------------------------------- 1 | --- 2 | tags: 3 | - Free 4 | system: 5 | - www-mahti 6 | - www-puhti 7 | - www-lumi 8 | --- 9 | 10 | # Julia-Jupyter 11 | 12 | A version of the [Jupyter app](jupyter.md) for Julia programming language. 13 | 14 | ## License 15 | 16 | Free 17 | 18 | ## Available 19 | 20 | Julia-Jupyter is available as an interactive application via the web interface for 21 | 22 | - Mahti 23 | - Puhti 24 | - LUMI 25 | 26 | ## More information 27 | 28 | More information on Julia-Jupyter, interactive applications, and the web interfaces can be found under the [Computing section](../computing/index.md): 29 | 30 | - [Julia-Jupyter](../computing/webinterface/julia-on-jupyter.md) 31 | - [Interactive applications](../computing/webinterface/apps.md) 32 | - [Web interfaces](../computing/webinterface/index.md) 33 | -------------------------------------------------------------------------------- /docs/apps/jupyter-for-courses.md: -------------------------------------------------------------------------------- 1 | --- 2 | tags: 3 | - Free 4 | system: 5 | - www-mahti 6 | - www-puhti 7 | --- 8 | 9 | # Jupyter for courses 10 | 11 | A version of the [Jupyter app](jupyter.md) for setting up custom course environments. 12 | 13 | 14 | ## License 15 | 16 | Free 17 | 18 | 19 | ## Available 20 | 21 | Jupyter for courses is available as an interactive application via the web interface for 22 | 23 | - Mahti 24 | - Puhti 25 | 26 | 27 | ## More information 28 | 29 | More information on Jupyter for courses, interactive applications, and the web interfaces for courses can be found under the [Computing section](../computing/index.md): 30 | 31 | - [Jupyter for courses](../computing/webinterface/jupyter-for-courses.md) 32 | - [Interactive applications](../computing/webinterface/apps.md) 33 | - [Web interfaces](../computing/webinterface/index.md) 34 | -------------------------------------------------------------------------------- /docs/apps/materialsstudio.md: -------------------------------------------------------------------------------- 1 | --- 2 | tags: 3 | - Academic 4 | --- 5 | 6 | # Materials Studio 7 | 8 | Materials Studio is a versatile modelling suite for building and performing 9 | quantum and classical simulations of molecules, materials and nanostructures. 10 | 11 | !!! warning "Note" 12 | The national Materials Studio license provided by CSC was discontinued in 2022. 13 | Since the beginning of 2023, it is no longer available. Please consider using, e.g., 14 | [Maestro](maestro.md) or [AMS](ams.md) instead. 15 | [Contact CSC Service Desk](../support/contact.md) if you need support in migrating 16 | your workflow. 17 | -------------------------------------------------------------------------------- /docs/apps/rstudio.md: -------------------------------------------------------------------------------- 1 | --- 2 | tags: 3 | - Other 4 | system: 5 | - www-puhti 6 | --- 7 | 8 | # RStudio IDE 9 | 10 | RStudio is an integrated development environment (IDE) for R. More information on RStudio can be found on the [RStudio website](https://rstudio.com/). 11 | 12 | ## Available 13 | 14 | For running R and RStudio on Puhti, please see the user documentation for [`r-env`](r-env.md). 15 | 16 | ## License 17 | 18 | See [the Licenses section of `r-env`](r-env.md#licenses). 19 | -------------------------------------------------------------------------------- /docs/apps/tensorboard.md: -------------------------------------------------------------------------------- 1 | --- 2 | tags: 3 | - Free 4 | system: 5 | - www-mahti 6 | - www-puhti 7 | - www-lumi 8 | --- 9 | 10 | # TensorBoard 11 | 12 | The visualization toolkit for [TensorFlow](tensorflow.md). 13 | 14 | ## License 15 | 16 | Free 17 | 18 | ## Available 19 | 20 | TensorBoard is available as an interactive application via the web interface 21 | for 22 | 23 | - Mahti 24 | - Puhti 25 | - LUMI 26 | 27 | ## More information 28 | 29 | More information on TensorBoard, interactive applications, and the web 30 | interfaces can be found under the [Computing section](../computing/index.md): 31 | 32 | - [TensorBoard](../computing/webinterface/tensorboard.md) 33 | - [Interactive applications](../computing/webinterface/apps.md) 34 | - [Web interfaces](../computing/webinterface/index.md) 35 | -------------------------------------------------------------------------------- /docs/cloud/dbaas/databases.md: -------------------------------------------------------------------------------- 1 | # Databases 2 | 3 | Currently Pukki supports PostgreSQL and MariaDB. If you think that Pukki should support some specific 4 | database type please [contact us](../../support/contact.md) with your suggestions. 5 | 6 | * [PostgreSQL](postgresql.md) 7 | * [MariaDB](mariadb.md) 8 | -------------------------------------------------------------------------------- /docs/cloud/dbaas/getting-started.md: -------------------------------------------------------------------------------- 1 | # Getting started with DBaaS 2 | 3 | * [Web interface](web-interface.md) 4 | * [Command Line tools](cli.md) 5 | * [Database Operations](operations.md) 6 | * [Firewalls](firewalls.md) 7 | * [Application Credentials](application-credentials.md) 8 | -------------------------------------------------------------------------------- /docs/cloud/dbaas/index.md: -------------------------------------------------------------------------------- 1 | # Pukki - Database as a Service 2 | 3 | * [What is Database as a Service](what-is-dbaas.md) 4 | 5 | ## Getting access to DBaaS 6 | 7 | * [Applying for DBaaS access](../../accounts/how-to-add-service-access-for-project.md) 8 | * [Security guide for DBaaS](security-guides.md) 9 | * [What does DBaaS cost](flavors.md) 10 | 11 | ## Using DBaaS 12 | 13 | * [Web interface](web-interface.md) 14 | * [Command Line tools](cli.md) 15 | * [Using backups](backups.md) 16 | * [Database operations](operations.md) 17 | 18 | ## Database types 19 | 20 | * [PostgreSQL](postgresql.md) 21 | * [MariaDB](mariadb.md) 22 | -------------------------------------------------------------------------------- /docs/cloud/img/4cat-docker-compose.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/cloud/img/4cat-docker-compose.png -------------------------------------------------------------------------------- /docs/cloud/img/4cat-rahti.png: -------------------------------------------------------------------------------- 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line](./command-line-tools.md) 8 | - [Images](./images.md) 9 | - [Install](./install-client.md) 10 | - [Known problems and limitations](./known-problems.md) 11 | - [Orchestration with Heat](tutorials/heat-orchestration.md) 12 | - [Security Guidelines for Pouta](./security.md) 13 | -------------------------------------------------------------------------------- /docs/cloud/pouta/configuration.md: -------------------------------------------------------------------------------- 1 | # Configuration 2 | 3 | - [VM lifecycle & saving BUs](vm-lifecycle.md) 4 | - [Virtual machine flavors and Billing Unit rates](vm-flavors-and-billing.md) 5 | - [Accounting principles and quotas](accounting.md) 6 | - [Images](images.md) 7 | - [Networking](networking.md) 8 | - [Storage](storage.md) 9 | -------------------------------------------------------------------------------- /docs/cloud/pouta/getting-started.md: -------------------------------------------------------------------------------- 1 | # Overview 2 | 3 | Here is a short video explaining how to run a virtual machine with the Pouta service. 4 | 5 |
6 | [![Pouta - Creating a virtual machine](../img/pouta_getting_started_video_poster.png){ width=400px }](https://video.csc.fi/id/0_qilcsiyp?width=608&height=402&playerId=14971191){ target="_blank" } 7 |
8 | 9 | Please visit also [Creating a virtual machine](launch-vm-from-web-gui.md) and [Connecting the virtual machine](connecting-to-vm.md) for more detailed instructions. 10 | 11 | It is also worth to check out this 21 minute video from our specialist [Webinar: Creating a Virtual Machine in cPouta](https://www.youtube.com/watch?v=CIO8KRbgDoI){ target="_blank" }. 12 | 13 | Once the virtual machine is up and running, continue with [the configuration](configuration.md). 14 | -------------------------------------------------------------------------------- /docs/cloud/pouta/tutorials/index.md: -------------------------------------------------------------------------------- 1 | # Tutorials 2 | 3 | * [cPouta and ePouta related videos](pouta-videos.md) 4 | * [Create a fixed IP for a VM](create-fixed-ip-for-Vm.md) 5 | * [Create a jumphost in cPouta](create-jumphost.md) 6 | * [Learn cloud computing by developing and deploying a web application](web-app-dev-cloud.md) 7 | * [Orchestration with Heat](heat-orchestration.md) 8 | * [SSH Key-pair](ssh-key.md) 9 | * [Setting up a pipeline for pictures](picture-pipeline.md) 10 | 11 | We also have an [FAQ](../../../support/faq/index.md#pouta) for Pouta. Take a look at it. 12 | -------------------------------------------------------------------------------- /docs/cloud/rahti/advanced.md: -------------------------------------------------------------------------------- 1 | # Advanced 2 | 3 | - [Images](images/overview.md) 4 | - [Networking](networking.md) 5 | - [Security guide](security-guide.md) 6 | - [Storage in Rahti](storage/index.md) 7 | -------------------------------------------------------------------------------- /docs/cloud/rahti/tutorials/annotations.md: -------------------------------------------------------------------------------- 1 | !!! success "Basic level" 2 | You need a knowledge of OpenShift CLI tool [oc](../usage/cli.md) and kubernetes [annotations](https://kubernetes.io/docs/concepts/overview/working-with-objects/annotations/) 3 | 4 | # Annotations 5 | 6 | You can use Kubernetes annotations to attach arbitrary non-identifying metadata to objects. Clients such as tools and libraries can retrieve this metadata. Annotations, like labels, are key/value maps. 7 | 8 | Annotations can be added to any object by simply doing: 9 | 10 | ``` 11 | oc annotate = 12 | ``` 13 | 14 | Here are some examples that use annotations: 15 | 16 | * [Protecting Against DDoS Attacks](../../../support/faq/DDos.md) 17 | * [Route annotations](../concepts.md#route) 18 | * [Custom domain names and secure transport](custom-domain.md) 19 | -------------------------------------------------------------------------------- /docs/computing/compiling-lumi.md: -------------------------------------------------------------------------------- 1 | # Compiling applications in LUMI 2 | 3 | ## General instructions 4 | 5 | * The LUMI software policy is that users should install required software themselves. 6 | * To support this process, the [EasyBuild](https://docs.lumi-supercomputer.eu/software/installing/easybuild/) tool is provided with accompanying build recipes for several applications. For more details, see the [LUMI software documentation pages](https://docs.lumi-supercomputer.eu/software/). 7 | * Compiling applications manually is of course also possible. Please see [the LUMI documentation](https://docs.lumi-supercomputer.eu/development/) for more information on developing and compiling applications in the LUMI programming environment. 8 | -------------------------------------------------------------------------------- /docs/computing/webinterface/job-composer.md: -------------------------------------------------------------------------------- 1 | # Job Composer 2 | The Job Composer app can be used for creating and managing batch jobs. 3 | 4 | Jobs are created from templates, which can be selected in a few ways 5 | 6 | * Copy a template from the system 7 | * Copy a template you have previously created 8 | * Use a previous job as template 9 | 10 | ## Getting started 11 | 12 | An example of running a basic Slurm job. 13 | Create a job from the default template by clicking `From Default Template` in the `New Job` dropdown. 14 | To edit the name of the job click `Job Options`. 15 | The batch job script can be edited by clicking `Open Editor` 16 | -------------------------------------------------------------------------------- /docs/computing/webinterface/matlab.md: -------------------------------------------------------------------------------- 1 | # MATLAB 2 | 3 | The app will start a MATLAB session on Puhti with the specified resources. 4 | Currently, only the R2023b release with Parallel Computing and Compiler SDK toolboxes is installed. 5 | 6 | In addition to computing resources, partition and project, there is an **optional** "License file" field. 7 | With it you can specify path to your own home organisation's license server to obtain MATLAB license 8 | from there instead. This option is useful, for example, in situations where all CSC's MATLAB licences are already reserved. 9 | 10 | For documentation on using MATLAB, see the [MATLAB documentation](../../apps/matlab.md). 11 | -------------------------------------------------------------------------------- /docs/computing/webinterface/mlflow.md: -------------------------------------------------------------------------------- 1 | # MLflow 2 | 3 | The MLflow app launches the [MLflow tracking UI](https://www.mlflow.org/) on a compute node. 4 | 5 | To launch it select where the MLflow files are stored. This is 6 | typically either: 7 | 8 | - a directory like `/scratch//mlruns/` 9 | - an SQLite database like `sqlite:////scratch//mlruns.db` 10 | 11 | The default resource settings should be fine for most cases. 12 | 13 | Also checkout the [MLflow section in our Machine learning 14 | guide](../../support/tutorials/ml-workflows.md#mlflow). 15 | -------------------------------------------------------------------------------- /docs/computing/webinterface/project-view.md: -------------------------------------------------------------------------------- 1 | # Project view 2 | 3 | The _Project view_ tool visualizes info of your current Puhti or Mahti 4 | projects. It contains also a _Disk quotas_ tab, which shows you your Lustre 5 | quotas. 6 | 7 | !!! info-label 8 | Note that you can only view your projects in the Project view. To modify 9 | your projects or quotas, please use [MyCSC](https://my.csc.fi/). 10 | 11 | Besides listing your Puhti or Mahti Lustre quotas, the Disk quotas tab can 12 | group quotas together based on project or by disk area. The quotas can also be 13 | sorted by clicking the column headers and there is a search function available 14 | as well. 15 | -------------------------------------------------------------------------------- /docs/computing/webinterface/shell.md: -------------------------------------------------------------------------------- 1 | # Shell 2 | 3 | The shell apps can be found under _Pinned Apps_ or on the top navbar under the 4 | _Tools_ section. There are two different shells. 5 | 6 | The _Login node shell_ launches a normal Linux shell on one of the login nodes. 7 | Any command that is running when the login node shell browser tab is closed 8 | will stop. Note that the same rules apply here as during a normal SSH session: 9 | 10 | !!! error-label 11 | **Login nodes are only for light pre/postprocessing** 12 | (see [usage policy](../usage-policy.md)). 13 | 14 | The _Compute node shell_ launches a persistent shell on a compute node for 15 | heavier commands that should not be run on login nodes. 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Dataset content reorganized!.

8 | 9 | 10 | -------------------------------------------------------------------------------- /docs/data/index.md: -------------------------------------------------------------------------------- 1 | ## [Working with data](datasets/dataset-sources.md) 2 | 3 | ## [Moving data](moving/index.md) 4 | 5 | ## [Allas object storage](Allas/index.md) 6 | 7 | ## [Kaivos database service](kaivos/overview.md) 8 | -------------------------------------------------------------------------------- /docs/data/moving/img/etsin-download-options.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/data/moving/img/etsin-download-options.png -------------------------------------------------------------------------------- /docs/data/moving/img/etsin-download.png: -------------------------------------------------------------------------------- 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environment](../ida/using_ida.md) 14 | * [Remote disk mounts](disk_mount.md) 15 | * [Copying data between Allas and IDA via Puhti](copy_allas_ida.md) 16 | -------------------------------------------------------------------------------- /docs/data/sensitive-data/csc-sd-services.pub: -------------------------------------------------------------------------------- 1 | -----BEGIN CRYPT4GH PUBLIC KEY----- 2 | dmku3fKA/wrOpWntUTkkoQvknjZDisdmSwU4oFk/on0= 3 | -----END CRYPT4GH PUBLIC KEY----- 4 | -------------------------------------------------------------------------------- /docs/data/sensitive-data/data-processing-form.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/data/sensitive-data/data-processing-form.docx -------------------------------------------------------------------------------- /docs/data/sensitive-data/fega-general-information.docx: 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/docs/img/windows/tasks.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/img/windows/tasks.png -------------------------------------------------------------------------------- /docs/img/x-circle.svg: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs/img/youtube.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/img/youtube.png -------------------------------------------------------------------------------- /docs/support/archives/asiakaskoulutus-customer-training.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://newsletter.csc.fi/archive/asiakaskoulutus-customer-training/rss 3 | --- 4 | 5 | # Newsletter 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/archives/compute-server-announcements.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://postit.csc.fi/sympa/rss/latest_arc/compute-server-announcements?for=365 3 | --- 4 | 5 | # Mailing list 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/archives/lumi-users.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://postit.csc.fi/sympa/rss/latest_arc/lumi-users?for=365 3 | --- 4 | 5 | # Mailing list 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/archives/mahti-users.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://postit.csc.fi/sympa/rss/latest_arc/mahti-users?for=365 3 | --- 4 | 5 | # Mailing list 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/archives/pouta-users.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://postit.csc.fi/sympa/rss/latest_arc/pouta-users?for=365 3 | --- 4 | 5 | # Mailing list 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/archives/puhti-users.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://postit.csc.fi/sympa/rss/latest_arc/puhti-users?for=365 3 | --- 4 | 5 | # Mailing list 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/archives/rahti-users.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://postit.csc.fi/sympa/rss/latest_arc/rahti-users?for=365 3 | --- 4 | 5 | # Mailing list 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/archives/sd-desktop-users.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://postit.csc.fi/sympa/rss/latest_arc/sd-desktop-users?for=365 3 | --- 4 | 5 | # Mailing list 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/archives/tutkimus-research.md: -------------------------------------------------------------------------------- 1 | --- 2 | archive_feed: https://newsletter.csc.fi/archive/tutkimus-research/rss 3 | --- 4 | 5 | # Newsletter 6 | 7 | --8<-- "placeholders/archive.md" 8 | -------------------------------------------------------------------------------- /docs/support/faq/can-i-have-a-personal-project-or-bucket-in-allas.md: -------------------------------------------------------------------------------- 1 | # Can I have a personal project, bucket or object in Allas? 2 | 3 | All the contents of a project's bucket are available to all project members and 4 | all the project members have full access rights to all the project's buckets 5 | and the objects inside them. Hence, you can **not** have a personal bucket 6 | within a project including other members. 7 | 8 | Therefore, the only way to get a personal project or bucket is you being the 9 | only member in the project. 10 | -------------------------------------------------------------------------------- /docs/support/faq/can-i-run-mpi-applications-on-pouta.md: -------------------------------------------------------------------------------- 1 | # Can I run MPI applications on Pouta? 2 | 3 | MPI applications should run, although currently we don't have any specific 4 | guidelines for users. We welcome feedback or benchmark results. Please contact 5 | [CSC Service Desk](../contact.md). 6 | -------------------------------------------------------------------------------- /docs/support/faq/can-i-use-csc-services-abroad.md: -------------------------------------------------------------------------------- 1 | # I'm moving abroad. Can I still use CSC services? 2 | 3 | If you are leaving abroad, e.g., as a visiting or post-doc researcher, you 4 | have the right to use CSC's services as long as some connection to a Finnish 5 | higher education institution or state research institute remains. This could 6 | be, for example, a collaboration with your old research group, in which case 7 | you could be invited to a CSC project by the PI as an international 8 | collaborator. For more details, see 9 | [Free-of-charge use cases](https://research.csc.fi/free-of-charge-use-cases). 10 | 11 | In case you have problems using CSC's services abroad, please 12 | [contact CSC Service Desk](../contact.md) to locate the problem. 13 | -------------------------------------------------------------------------------- /docs/support/faq/do-you-offer-ssl-certificates.md: -------------------------------------------------------------------------------- 1 | # Do you offer SSL certificates? 2 | 3 | Not as such, but you do have several options: 4 | 5 | * If your organization is a Funet member organization, and it has 6 | signed the contract to use the certificate service, you can get free 7 | certificates via your organization's administrators. 8 | * There are also services that provide free certificates. For example, 9 | [Let's Encrypt](https://letsencrypt.org/) provides certificates which behave 10 | well with most modern web browsers. 11 | * If you are using Rahti, you can use the wildcard certificate for 12 | `*.2.rahtiapp.fi` DNS names. See also: 13 | [Do you offer SSL certificates in Rahti](rahti-ssl-certificates.md). 14 | -------------------------------------------------------------------------------- /docs/support/faq/email_not_working.md: -------------------------------------------------------------------------------- 1 | # Sending email when a job starts/finishes is not working 2 | 3 | * Check that the option is correctly set in your batch script. For example, to 4 | get email when the job starts, it should read `#SBATCH --mail-type=BEGIN`. 5 | * Multiple arguments are separated by a comma, e.g. 6 | `#SBATCH --mail-type=BEGIN,END`. 7 | * The email is by default sent to the email address linked to your CSC account. 8 | * If you are using the `#SBATCH --mail-user=` option to 9 | override the default email address, ensure that the email set is valid. 10 | -------------------------------------------------------------------------------- /docs/support/faq/how-can-i-share-my-data-with-others.md: -------------------------------------------------------------------------------- 1 | # How can I share my data with other users? 2 | 3 | Sharing data, e.g. datasets or research results, is easy in the 4 | [Allas object storage](../../data/Allas/introduction.md). You can share these 5 | either with a limited audience, e.g. other projects, or allow access for 6 | everybody by making the data public. 7 | 8 | Read more about 9 | [sharing your data in Allas](../../data/Allas/using_allas/common_use_cases.md). 10 | -------------------------------------------------------------------------------- /docs/support/faq/how-do-i-know-how-much-resources-i-have-left.md: -------------------------------------------------------------------------------- 1 | # How do I know how much computing resources I have left? 2 | 3 | By logging in to our customer portal [MyCSC](https://my.csc.fi). 4 | You can see your projects, their project numbers, managers and billing 5 | unit status on the [*Projects* page](https://my.csc.fi/projects). 6 | 7 | On CSC supercomputers, `csc-projects` command will provide information on your 8 | [active projects](../../computing/index.md#projects-and-quotas) directly on the 9 | command-line. For more information about usage, run: 10 | 11 | ```bash 12 | csc-projects --help 13 | ``` 14 | -------------------------------------------------------------------------------- /docs/support/faq/how-to-change-organization.md: -------------------------------------------------------------------------------- 1 | # I have moved to a new university/organization. Can I keep my present user account and join it to some new project under the new organization? 2 | 3 | Yes, you can. Doing this is actually mandatory so that the user statistics will 4 | go right, and so that your account will not be closed when your old email 5 | address expires. 6 | 7 | [Please contact CSC Service Desk](../contact.md), and we will update your 8 | organization for you. After this, you may 9 | [apply for a new project](../../accounts/how-to-create-new-project.md), or your 10 | project manager in the new organization can 11 | [add you to the relevant project(s)](../../accounts/how-to-add-members-to-project.md). 12 | -------------------------------------------------------------------------------- /docs/support/faq/how-to-cite-csc.md: -------------------------------------------------------------------------------- 1 | # How to cite CSC in a paper 2 | 3 | A good place is the acknowledgements at the end of the manuscript. A typical 4 | statement is: 5 | 6 | > The authors wish to acknowledge CSC – IT Center for Science, Finland, for 7 | > computational resources. 8 | 9 | This wording covers both computing time and licenses, and if you've used 10 | **a lot** of resources, you can add: *for generous computational resources.* 11 | -------------------------------------------------------------------------------- /docs/support/faq/how-to-create-CSC-user-account.md: -------------------------------------------------------------------------------- 1 | # How to create a CSC user account 2 | 3 | If your home organization is a member of the Haka or Virtu federation, you can 4 | [create a CSC account yourself](../../accounts/how-to-create-new-user-account.md). 5 | 6 | If you don't have Haka or Virtu, please see 7 | [how to contact us to register](../../accounts/how-to-create-new-user-account.md#getting-an-account-without-haka-or-virtu). 8 | 9 | Please see the 10 | [Accounts section](../../accounts/how-to-create-new-user-account.md) and 11 | [general information about getting started with CSC services](https://research.csc.fi/accounts-and-projects) 12 | for more information. 13 | -------------------------------------------------------------------------------- /docs/support/faq/how-to-create-default-network-and-router-in-pouta.md: -------------------------------------------------------------------------------- 1 | # How to create default network and router in a Pouta project 2 | 3 | If your project doesn't come with a default network and router configuration, here is the link where you find information about creating a default network and router: 4 | 5 | [Networking in Pouta](../../cloud/pouta/networking.md) 6 | -------------------------------------------------------------------------------- /docs/support/faq/how-to-find-information-about-projects.md: -------------------------------------------------------------------------------- 1 | # How can I find information about my projects? 2 | 3 | By logging in to our customer portal [MyCSC](https://my.csc.fi). You can see 4 | your projects, their project numbers, managers and billing unit status on the 5 | [*Projects* sub-page](https://my.csc.fi/projects). 6 | 7 | Please see also: 8 | 9 | * [How to create a new project](../../accounts/how-to-create-new-project.md). 10 | * `csc-projects` – a command-line tool for querying information about your 11 | [active projects on CSC supercomputers](../../computing/index.md#projects-and-quotas). 12 | -------------------------------------------------------------------------------- /docs/support/faq/how-to-get-started-at-CSC.md: -------------------------------------------------------------------------------- 1 | # How to get started as a new user at CSC? 2 | 3 | You are now browsing through our service guides. 4 | We have collected some useful materials in the following locations: 5 | 6 | * [CSC accounts and projects](../../accounts/index.md) 7 | * [CSC customer portal MyCSC](https://my.csc.fi) 8 | * [Free-of-charge use cases](https://research.csc.fi/free-of-charge-use-cases) 9 | * [Services for research](https://research.csc.fi) 10 | * [Services by discipline](https://research.csc.fi/sciences) 11 | * [Tutorials](../../support/tutorials/index.md) 12 | * [Frequently Asked Questions](index.md) 13 | * [Collection of training materials](../training-material/index.md) 14 | * [CSC training calendar](https://csc.fi/en/trainings/training-calendar/) 15 | 16 | Need direct support? [Contact CSC Service Desk](../contact.md)! 17 | -------------------------------------------------------------------------------- /docs/support/faq/how-to-install-own-software.md: -------------------------------------------------------------------------------- 1 | # How to install my own software in CSC supercomputer 2 | 3 | It is possible to install your own software but the instructions from the 4 | web rarely work _as is_. For example, you can't install in the typical 5 | default locations. Instead, the recommended location is your 6 | `/projappl/project_xxxx` folder. 7 | 8 | For details, please consult the 9 | [Installing own software chapter](https://a3s.fi/CSC_training/09_installing.html#/installing-own-software) 10 | of our CSC Computing Environment course materials and follow the related 11 | [hands-on tutorials](https://csc-training.github.io/csc-env-eff/part-2/installing/). 12 | -------------------------------------------------------------------------------- /docs/support/faq/how-to-store-data-in-pouta.md: -------------------------------------------------------------------------------- 1 | # How to store data on Pouta? 2 | 3 | Pouta provides two choices 4 | **[which are not backed up by CSC](is-pouta-backed-up.md)**: 5 | 6 | * Temporary storage via local disks attached to virtual machines. OpenStack 7 | calls this ephemeral (meaning *lasting for a very short time*) storage. 8 | * Longer term storage via _Volumes_. Volumes appear as raw disks attached to 9 | virtual machines. See: 10 | * [What are volumes? How to use them?](what-are-volumes-and-how-to-use.md) 11 | 12 | Alternatively, you can access data in 13 | [Allas object storage](../../data/Allas/index.md). 14 | -------------------------------------------------------------------------------- /docs/support/faq/img/Could_not_load_image_metadata.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/Could_not_load_image_metadata.png -------------------------------------------------------------------------------- /docs/support/faq/img/Failed_to_pull_image.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/Failed_to_pull_image.png -------------------------------------------------------------------------------- /docs/support/faq/img/cloud_pouta_resize_custome_disk.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/cloud_pouta_resize_custome_disk.png -------------------------------------------------------------------------------- /docs/support/faq/img/confirm_resize.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/confirm_resize.png -------------------------------------------------------------------------------- /docs/support/faq/img/post-creation-pouta.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/post-creation-pouta.png -------------------------------------------------------------------------------- /docs/support/faq/img/resize_button.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/resize_button.png -------------------------------------------------------------------------------- /docs/support/faq/img/resize_volume.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/resize_volume.png -------------------------------------------------------------------------------- /docs/support/faq/img/resize_volume_window.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/resize_volume_window.png -------------------------------------------------------------------------------- /docs/support/faq/img/resize_window.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/resize_window.png -------------------------------------------------------------------------------- /docs/support/faq/img/terminal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/terminal.png -------------------------------------------------------------------------------- /docs/support/faq/img/terminalPod1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/terminalPod1.png -------------------------------------------------------------------------------- /docs/support/faq/img/terminalPod2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/terminalPod2.png -------------------------------------------------------------------------------- /docs/support/faq/img/terminalPod3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CSCfi/csc-user-guide/c1d718a4afdc509af0c6496309449a279b6f332d/docs/support/faq/img/terminalPod3.png -------------------------------------------------------------------------------- /docs/support/faq/is-pouta-backed-up.md: -------------------------------------------------------------------------------- 1 | # Is Pouta backed up? 2 | 3 | User data is not backed up. It's the user's responsibility to make backups of 4 | data as needed. Depending on the type and amount of data, users can consider 5 | making another copy at, or using in parallel, one of the other CSC data 6 | services. Please have a look at the [Data section](../../data/index.md). 7 | -------------------------------------------------------------------------------- /docs/support/faq/is-there-a-glossary-of-the-acronyms-you-keep-using.md: -------------------------------------------------------------------------------- 1 | # Is there a glossary of the acronyms you keep using? 2 | 3 | Yes, there is! In addition to a [specific glossary page](../glossary.md), the 4 | acronyms found across Docs CSC have their definitions embedded as tooltips. For 5 | example, if you move your mouse cursor over (or tap it on mobile/touchscreen) 6 | this underlined acronym: HPC, you'll see its definition as a so-called tooltip. 7 | -------------------------------------------------------------------------------- /docs/support/faq/new-password.md: -------------------------------------------------------------------------------- 1 | # How do I get a new CSC password? 2 | 3 | From [MyCSC](https://my.csc.fi), click *Log In* button from the right top 4 | corner, and select *CSC Login* in the *Select authentication provider* view. 5 | The CSC Login page has a *Forgot password?* link. 6 | 7 | Or shorter, just navigate directly to the 8 | [*Forgotten your password?* page](https://my.csc.fi/forgot-password). 9 | -------------------------------------------------------------------------------- /docs/support/faq/rahti-ssl-certificates.md: -------------------------------------------------------------------------------- 1 | # Do you offer in Rahti SSL certificates? 2 | 3 | Yes, a wildcard certificate for the DNS names `*.2.rahtiapp.fi` and `*.rahtiapp.fi` is installed and can be used directly by the user. 4 | 5 | So if the DNS name of your service is under the subdomain `rahtiapp.fi`, simply enable the *TLS encryption* of the route, and automatically the route will have a valid certificate. The certificate is managed by the Rahti team, this includes the renewal and installation. 6 | 7 | If the DNS name is not under the subdomain `rahtiapp.fi`, you need to provide your own certificate. You need to take care of obtaining the certificate, adding it to the `Route` object, and afterwards renew it before it expires. 8 | 9 | You can read more about this in our [Custom domain names and secure transport](../../cloud/rahti/tutorials/custom-domain.md) tutorial. 10 | -------------------------------------------------------------------------------- /docs/support/faq/rahti-udp.md: -------------------------------------------------------------------------------- 1 | # Does Rahti support UDP connections? 2 | 3 | No, meanwhile, internal UDP traffic is possible, i.e.: during Pod to Pod communications inside the same namespace. It is not possible to contact Rahti using the UDP protocol. Only HTTP/HTTPS is supported for `Route`s, and `oc port-forwarding` only supports TCP ports. 4 | -------------------------------------------------------------------------------- /docs/support/faq/what-are-volumes-and-how-to-use.md: -------------------------------------------------------------------------------- 1 | # What are volumes? How do I use them? 2 | 3 | Volumes are virtual block devices exported from a central storage backend to 4 | virtual machines. A volume can be attached to one virtual machine at a time. 5 | These volumes can be further used to provide different storage options, such as 6 | NFS through a virtual machine running an NFS server. 7 | 8 | For how to use volumes on Pouta, see 9 | [Persistent volumes](../../cloud/pouta/persistent-volumes.md). 10 | -------------------------------------------------------------------------------- /docs/support/faq/what-does-it-cost-to-use-pouta.md: -------------------------------------------------------------------------------- 1 | # What does it cost to use Pouta? 2 | 3 | Pouta usage is free for Finnish academic use if a project application is 4 | accepted. This uses the same process as the HPC systems at CSC. For a detailed 5 | explanation, see 6 | [Pouta Usage policy](../../cloud/pouta/vm-flavors-and-billing.md). 7 | 8 | [Academic and commercial pricing](https://research.csc.fi/purchasing) is also 9 | available for cases where we are unable to provide free access or sufficient 10 | resources. 11 | 12 | Accounting and billing is based on the same billing units that are used in the 13 | HPC systems at CSC. Academic users can apply for more free billing units 14 | through the [CSC customer portal MyCSC](https://my.csc.fi). Paying customers 15 | should contact [CSC Service Desk](../contact.md). 16 | -------------------------------------------------------------------------------- /docs/support/faq/why-this-container-does-not-work.md: -------------------------------------------------------------------------------- 1 | # Why this container report permission denied errors? 2 | 3 | The most common reason for a container to fail to run in Rahti, is that the container image expects to be run as `root`. As Rahti does not run images as root, permission denied errors will stop the execution. 4 | 5 | The solution is to use a different image. The first option is to find another image that is prepared to be run as a non root user. If there is not an image already prepared to run in OpenShift, or it is not provided by a trustable source, the other option is to modify the current image to make it work with a non root user, for example as described in the [Creating images](../../cloud/rahti/images/creating.md) section. 6 | -------------------------------------------------------------------------------- /docs/support/faq/x11-graphics.md: -------------------------------------------------------------------------------- 1 | # X11 remote graphics does not work 2 | 3 | Remote graphics requires tunneling X11 through SSH using the `-X` flag. On 4 | Linux, connect to e.g. Puhti using: 5 | 6 | ```bash 7 | ssh -X @puhti.csc.fi 8 | ``` 9 | 10 | An error may occur if you have run out of disk quota. 11 | 12 | Another (better) way to run remote graphics is to use a remote desktop through 13 | the [Puhti web interface](../../computing/webinterface/index.md). 14 | 15 | For more details, see our 16 | [instructions for graphical connections](../../computing/connecting/index.md#graphical-connection). 17 | -------------------------------------------------------------------------------- /docs/support/index.md: -------------------------------------------------------------------------------- 1 | # Additional support materials 2 | 3 | In addition to the manual sections, Docs CSC also includes [Frequently Asked Questions](faq/index.md), 4 | a collection of [Tutorials](tutorials/index.md), a selection of hand picked 5 | [Training Materials](training-material/index.md) suitable for self learning, and 6 | [contact informtation](contact.md) to ask for support from our specialists. 7 | -------------------------------------------------------------------------------- /docs/support/tutorials/conda/c-ide.yaml: -------------------------------------------------------------------------------- 1 | name: c-ide 2 | channels: 3 | - /wrk/jle/DONOTREMOVE/conda/channels/csc-forge-based 4 | - conda-forge 5 | - defaults 6 | - anaconda 7 | dependencies: 8 | - git 9 | - font-ttf-source-code-pro 10 | - emacs 11 | - global 12 | - ctags 13 | - clangdev 14 | - cmake 15 | - make 16 | -------------------------------------------------------------------------------- /docs/support/tutorials/conda/conda-docs-env-1.0.yaml: -------------------------------------------------------------------------------- 1 | name: docs 2 | channels: 3 | - conda-forge 4 | dependencies: 5 | - python==3.7.3 6 | - pip==19.1.1 7 | - pip: 8 | - mkdocs==1.2.4 9 | - mdx-linkify==1.0 10 | - mdx-environment==0.2.0 11 | - yasha==4.1 12 | - mkdocs-material==4.3.0 13 | - pymdown-extensions==9.0 14 | - mkdocs-windmill==1.0.0 15 | #mkdocs-rtd-dropdown==1.0.2 16 | # 17 | -------------------------------------------------------------------------------- /docs/support/tutorials/conda/conda-docs-env-1.1.yaml: -------------------------------------------------------------------------------- 1 | name: docs-env 2 | channels: 3 | - conda-forge 4 | dependencies: 5 | - python==3.8.12 6 | - pip==19.3.1 7 | - pip: 8 | - Markdown==3.3.7 9 | - mkdocs==1.3.1 10 | - mkdocs-material==8.4.0 11 | - mkdocs-material-extensions==1.0.3 12 | - mkdocs-git-revision-date-localized-plugin==1.1.0 13 | -------------------------------------------------------------------------------- /docs/support/tutorials/conda/conda-docs-env-1.2.yaml: -------------------------------------------------------------------------------- 1 | name: docs-env 2 | channels: 3 | - conda-forge 4 | dependencies: 5 | - python==3.8.12 6 | - pip==19.3.1 7 | - pip: 8 | - Markdown==3.3.7 9 | - mkdocs==1.3.1 10 | - mkdocs-material==8.4.0 11 | - mkdocs-material-extensions==1.0.3 12 | - mkdocs-git-revision-date-localized-plugin==1.1.0 13 | - mkdocs-section-index 14 | - mkdocs-redirects 15 | -------------------------------------------------------------------------------- /docs/support/whats-new.md: -------------------------------------------------------------------------------- 1 | # What's new 2 | 3 | Here you will find news of new features 4 | and changes to the computing environment 5 | 6 | 7 | 8 | -------------------------------------------------------------------------------- /scripts/convert.py: -------------------------------------------------------------------------------- 1 | import sys 2 | import re 3 | section_name=sys.argv[1] 4 | mid=section_name.lower().replace('.','').replace(' ','-') 5 | mid2=re.sub('[^0-9a-zA-Z-]+','-',mid) 6 | print(re.sub('[-]+','-',mid2)) 7 | -------------------------------------------------------------------------------- /scripts/generate_glossary.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | source_dir="csc-overrides/assets/snippets/glossaries" 3 | glossary_dir="docs/support" 4 | generated_file="$glossary_dir/glossary.md" 5 | 6 | echo -e "# Glossary\n" > $generated_file 7 | 8 | first_letter="A" 9 | echo -e "## $first_letter\n" >> $generated_file 10 | 11 | cat $source_dir/*.md | 12 | uniq | 13 | sort -f | 14 | awk -F ": " '{ gsub(/\*\[|\]/, "`"); print $1 " — " "_" $2 "_" }' | 15 | while read line; do 16 | new_first_letter="${line:1:1}" 17 | if [ "$new_first_letter" != "$first_letter" ]; then 18 | first_letter="$new_first_letter" 19 | echo -e "\n## $first_letter\n" >> $generated_file 20 | fi 21 | echo -e "* $line" >> $generated_file 22 | done 23 | -------------------------------------------------------------------------------- /scripts/generate_new.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | t_dir="docs/support/wn" 3 | 4 | 5 | cd $t_dir 6 | for filename in ./*; do 7 | title=$(grep "^# " $filename | sed 's/#//g') 8 | echo -e "\n### $title\n" >> ../../index.md 9 | echo -e "\n## $title\n" >> ../whats-new.md 10 | topics=$(grep "^## " $filename | sed 's/#//g' | sed 's/ *$//g' | sed 's/^ *//g' ) 11 | i=0 12 | while IFS= read -r topic; do 13 | echo "- [$topic](wn/$(echo $filename | sed 's@^./@@g')#$(python3 ../../../scripts/convert.py "$topic") )" >> ../whats-new.md 14 | if [[ "$i" -lt 5 ]]; then 15 | echo "- [$topic](support/wn/$(echo $filename | sed 's@^./@@g')#$(python3 ../../../scripts/convert.py "$topic") )" >> ../../index.md 16 | let i++ 17 | fi 18 | done <<< "$topics" 19 | done 20 | -------------------------------------------------------------------------------- /scripts/skip_system.txt: -------------------------------------------------------------------------------- 1 | Ignore all of the index pages: 2 | 3 | SKIP_ALL index.md 4 | SKIP_ALL by_system.md 5 | SKIP_ALL by_discipline.md 6 | SKIP_ALL by_license.md 7 | 8 | 9 | Workaround: 10 | 11 | SKIP_mahti vscode.md 12 | SKIP_puhti vscode.md 13 | SKIP_mahti desktop.md 14 | SKIP_puhti desktop.md 15 | SKIP_puhti accelerated-visualization.md 16 | SKIP_mahti julia-jupyter.md 17 | SKIP_puhti julia-jupyter.md 18 | SKIP_mahti jupyter.md 19 | SKIP_puhti jupyter.md 20 | SKIP_mahti jupyter-for-courses.md 21 | SKIP_puhti jupyter-for-courses.md 22 | SKIP_mahti tensorboard.md 23 | SKIP_puhti tensorboard.md 24 | 25 | 26 | Misc: 27 | 28 | SKIP_puhti arcgis.md 29 | -------------------------------------------------------------------------------- /tests/check_fixme.sh: -------------------------------------------------------------------------------- 1 | #!/usr/local/env bash 2 | 3 | FOUND_FIXME=$(grep -o -i -n -r --include \*.md -- FIXME docs ) 4 | 5 | if [ -n "$FOUND_FIXME" ];then 6 | echo -e "Documentation contains FIXME" 7 | echo -e "Please correct the documentation and remove the FIXME\n" 8 | 9 | echo "$FOUND_FIXME" | sed 's#^\([^:]*\):\([^:]*\):.*#Line \2 in file \1 contains FIXME#' 10 | 11 | exit 1 12 | 13 | else 14 | echo "No FIXME found in the documentation" 15 | exit 0 16 | fi 17 | -------------------------------------------------------------------------------- /tests/check_internal_url.sh: -------------------------------------------------------------------------------- 1 | #!/usr/local/env bash 2 | 3 | internal_urls=$(grep -o -n -r --include \*.md -- "\[[^]]*\](http[^)]*docs.csc.fi[^)]*" docs) 4 | 5 | if [ -n "$internal_urls" ]; 6 | then 7 | echo -e "Found web urls pointing to docs.csc.fi" 8 | echo -e "Please change these to internal markdown links" 9 | 10 | echo "$internal_urls" | sed 's#\([^:]*\):\([^:]*\):.*(\(.*\)#Url \3 on line \2 in file \1 points to docs.csc.fi#g' 11 | 12 | exit 1 13 | 14 | else 15 | echo "No web urls pointing to docs.csc.fi found" 16 | exit 0 17 | fi 18 | 19 | -------------------------------------------------------------------------------- /tests/check_licenses.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env sh 2 | 3 | file_type="*.md" 4 | regex="^#\{2,3\} Licenses\?" 5 | directory="docs/apps" 6 | 7 | 8 | APPS_WITHOUT_LICENSE=$(grep -r -L \ 9 | --include "$file_type" \ 10 | --exclude index.md \ 11 | --exclude by_discipline.md \ 12 | --exclude by_system.md \ 13 | --exclude by_license.md \ 14 | --exclude bioconda.md \ 15 | --exclude discovery-studio.md \ 16 | --exclude materialsstudio.md \ 17 | --exclude nomachine.md \ 18 | -- \ 19 | "$regex" $directory) 20 | 21 | 22 | if [ -n "$APPS_WITHOUT_LICENSE" ]; then 23 | echo "Found application(s) with no entry for license:" 24 | echo "$APPS_WITHOUT_LICENSE" 25 | exit 1 26 | else 27 | echo "all applications have an entry for license" 28 | exit 0 29 | fi 30 | 31 | -------------------------------------------------------------------------------- /tests/check_long_slurm_flags.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | 3 | source tests/common_functions.sh 4 | regex="^\s*#SBATCH\s*-[A-Z,a-z]" 5 | pass_message="No short slurm flags found" 6 | fail_message="Short slurm flags found, change these to the long version:" 7 | 8 | 9 | run_regex_test "$regex" "$pass_message" "$fail_message" 10 | 11 | -------------------------------------------------------------------------------- /tests/check_mail_commands.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | 3 | source tests/common_functions.sh 4 | 5 | regex="^\s*#SBATCH\s*--mail-type" 6 | pass_message="The --mail-type flag is commented out in all batch job scripts" 7 | fail_message="The --mail-type flag should not be active in examples." 8 | 9 | ret_code=0 10 | 11 | if ! run_regex_test "$regex" "$pass_message" "$fail_message"; 12 | then 13 | ret_code=1 14 | echo -e "" 15 | fi 16 | 17 | regex="^\s*[#]*SBATCH\s*--mail-user" 18 | pass_message="The --mail-user is not present in any example script" 19 | fail_message="The --mail-user should not be present in any example script" 20 | 21 | if ! run_regex_test "$regex" "$pass_message" "$fail_message"; 22 | then 23 | ret_code=1 24 | fi 25 | 26 | exit $ret_code 27 | -------------------------------------------------------------------------------- /tests/check_masked.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | 3 | # .md files can not have the same name as directory 4 | # on the same level in the hierarchy as they will be 5 | # Masked and not visible 6 | 7 | index_files=$(find docs/ -mindepth 2 -name "index.md") 8 | RET=0 9 | 10 | while read -r file; do 11 | masked_md=$(echo "$file" | sed 's@/index@@g') 12 | if [ -f "$masked_md" ];then 13 | RET=1 14 | echo "File docs/$masked_md is masked by docs/$file" 15 | fi 16 | done<<<"$index_files" 17 | 18 | if [ $RET -eq 0 ]; 19 | then 20 | echo "No masked files found" 21 | exit 0 22 | else 23 | exit 1 24 | fi 25 | -------------------------------------------------------------------------------- /tests/check_partitions.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env sh 2 | 3 | part_flags=$(grep -E -n -r --include \*.md "^\s*#SBATCH\s*--partition=" docs) 4 | res=$(echo "$part_flags" | grep -Ev "#SBATCH\s*--partition=(All|small|large|medium|gc|test|longrun|fmi|hugemem|hugemem_longrun|gputest|gpu|interactive|q_fiqci|standard-g|small-g|dev-g|standard|small|debug|largemem)") 5 | 6 | if [ -z "$res" ]; then 7 | echo "All partition names seem to be valid" 8 | exit 0 9 | 10 | else 11 | echo "Found possibly invalid partitions." 12 | echo "$res" 13 | exit 1 14 | fi 15 | 16 | -------------------------------------------------------------------------------- /tests/check_youtube_embed.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | 3 | regex="iframe.* src=" 4 | 5 | IFRAME_WITH_SRC=$(grep -o -i -n -r --include \*.md -- "$regex" docs) 6 | 7 | if [ -n "$IFRAME_WITH_SRC" ];then 8 | echo -e "Found iframe with src attribute" 9 | echo -e "Please change this to srcdoc, so that our cookie blocking works\n" 10 | files=$(echo "$IFRAME_WITH_SRC" | cut -d ":" -f 1 ) 11 | #lines=$(echo "$IFRAME_WITH_SRC" | cut -d ":" -f 2 ) 12 | line_part=$(sed 's/$/ in file /g' "$files" | sed 's/^/Line /') 13 | file_part=$(sed 's/$/ contains iframe with src/g' "$files") 14 | paste <(echo "$line_part") <(echo "$file_part") -d "" 15 | exit 1 16 | 17 | else 18 | echo "iframes are correct" 19 | exit 0 20 | fi 21 | -------------------------------------------------------------------------------- /tests/checkbuild.bash: -------------------------------------------------------------------------------- 1 | #!/usr/loca/env bash 2 | 3 | build_out=$(mkdocs build --strict 2>&1) 4 | res_val=$? 5 | 6 | if [ $res_val = 0 ]; then 7 | NUMBERS_OF_WARNINGS=$(echo "$build_out" | grep -ic WARNING) 8 | if [ "$NUMBERS_OF_WARNINGS" -ne 0 ]; then 9 | echo "BUILD COMPLETED WITH WARNINGS:" 10 | echo "$build_out" |grep -i WARNING 11 | exit 1 12 | else 13 | echo "BUILD SUCCESSFUL" 14 | exit 0 15 | fi 16 | 17 | 18 | else 19 | echo "BUILD FAILED" 20 | echo "$build_out" 21 | exit 1 22 | fi 23 | -------------------------------------------------------------------------------- /tests/common_functions.sh: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env bash 2 | 3 | # Test passes if the regex does not match anything 4 | # Otherwise fails 5 | run_regex_test(){ 6 | REGEX_STRING="$1" 7 | SUCCESS_MESSAGE="$2" 8 | FAIL_MESSAGE="$3" 9 | res=$(grep -r -n --include \*.md -- "$REGEX_STRING" docs) 10 | 11 | if [ -z "$res" ]; then 12 | echo "$SUCCESS_MESSAGE" 13 | return 0 14 | else 15 | echo -e "$FAIL_MESSAGE\n" 16 | echo "$res" 17 | return 1 18 | fi 19 | 20 | } 21 | -------------------------------------------------------------------------------- /tests/misspell.bash: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | # https://github.com/client9/misspell 3 | # Correct commonly misspelled English words in source files 4 | ## 5 | # parameters: 6 | # -error makes it exit code 2 on errors - travis build failure 7 | # * is better than . because . includes the ".git" directory 8 | # and stops this from spellchecking git commit messages.. 9 | # -locale - the default is a neutral English (so not UK or US) 10 | ## 11 | # -w there's also a -w argument to misspell, it fixes the errors instead of just 12 | # outputting them 13 | if find . -type f \( -name '*.yml' -o -name '*.md' \) -print0 | xargs -0 misspell -error; 14 | then 15 | echo "No commonly misspelled English words found" 16 | exit 0 17 | else 18 | exit 1 19 | fi 20 | -------------------------------------------------------------------------------- /tests/python_link_tests/.gitignore: -------------------------------------------------------------------------------- 1 | *.txt 2 | __pycache__ 3 | -------------------------------------------------------------------------------- /tests/python_link_tests/check_broken_file_links.py: -------------------------------------------------------------------------------- 1 | from docs import * 2 | 3 | csc_docs=Docs() 4 | result = csc_docs.report_broken_file_links() 5 | print(result[1]) 6 | sys.exit(result[0]) 7 | -------------------------------------------------------------------------------- /tests/python_link_tests/check_broken_section_links.py: -------------------------------------------------------------------------------- 1 | from docs import * 2 | 3 | csc_docs=Docs() 4 | result = csc_docs.report_broken_section_links() 5 | print(result[1]) 6 | sys.exit(result[0]) 7 | -------------------------------------------------------------------------------- /tests/python_link_tests/check_hidden_files.py: -------------------------------------------------------------------------------- 1 | from docs import * 2 | 3 | csc_docs=Docs() 4 | result = csc_docs.report_hidden_files() 5 | print(result[1]) 6 | sys.exit(result[0]) 7 | -------------------------------------------------------------------------------- /tests/python_link_tests/link_check.py: -------------------------------------------------------------------------------- 1 | from docs import * 2 | 3 | csc_docs=Docs() 4 | 5 | result_file_link = csc_docs.report_broken_file_links() 6 | result_section_link = csc_docs.report_broken_section_links() 7 | result_hidden_file = csc_docs.report_hidden_files() 8 | print(result_section_link[1]) 9 | print(result_file_link[1]) 10 | print(result_hidden_file[1]) 11 | sys.exit(max(result_file_link[0],result_hidden_file[0],result_section_link[0])) 12 | --------------------------------------------------------------------------------