├── ASTRA-toolbox ├── COPYING ├── NEWS.txt ├── README.txt ├── algorithms │ └── DART │ │ ├── DARTalgorithm.m │ │ ├── IterativeTomography.m │ │ ├── IterativeTomography3D.m │ │ ├── Kernels.m │ │ ├── MaskingDefault.m │ │ ├── MaskingGPU.m │ │ ├── OutputDefault.m │ │ ├── SegmentationDefault.m │ │ ├── SmoothingDefault.m │ │ ├── SmoothingGPU.m │ │ ├── StatisticsDefault.m │ │ ├── examples │ │ ├── Generate_sino.m │ │ ├── Original_Image_128_128_128.bin │ │ ├── cylinders.png │ │ ├── example1.m │ │ ├── example1_S.png │ │ ├── example1_V.png │ │ ├── example1_results_20.mat │ │ ├── example2.m │ │ ├── example3.m │ │ ├── phantom3d.mat │ │ └── untitled.png │ │ └── tools │ │ ├── DARToptimizer.m │ │ ├── DARToptimizerBoneStudy.m │ │ ├── ProjDiffOptimFunc.m │ │ ├── dart_create_base_phantom.m │ │ ├── dart_scheduler.m │ │ └── rNMPOptimFunc.m ├── mex │ ├── AstraCuda64.dll │ ├── AstraCuda64.lib │ ├── astra_mex_algorithm_c.mexw64 │ ├── astra_mex_c.mexw64 │ ├── astra_mex_data2d_c.mexw64 │ ├── astra_mex_data3d_c.mexw64 │ ├── astra_mex_direct_c.mexw64 │ ├── astra_mex_log_c.mexw64 │ ├── astra_mex_matrix_c.mexw64 │ ├── astra_mex_projector3d_c.mexw64 │ ├── astra_mex_projector_c.mexw64 │ ├── cudart64_55.dll │ └── cufft64_55.dll ├── samples │ ├── s001_sinogram_par2d.m │ ├── s002_data2d.m │ ├── s003_gpu_reconstruction.m │ ├── s004_cpu_reconstruction.m │ ├── s005_3d_geometry.m │ ├── s006_3d_data.m │ ├── s007_3d_reconstruction.m │ ├── s008_gpu_selection.m │ ├── s009_projection_matrix.m │ ├── s010_supersampling.m │ ├── s011_object_info.m │ ├── s012_masks.m │ ├── s013_constraints.m │ ├── s014_FBP.m │ ├── s015_fp_bp.m │ ├── s016_plots.m │ └── s017_opTomo.m ├── tools │ ├── ROIselectfull.m │ ├── astra_add_noise_to_sino.m │ ├── astra_clear.m │ ├── astra_create_backprojection.m │ ├── astra_create_backprojection3d_cuda.m │ ├── astra_create_backprojection_cuda.m │ ├── astra_create_fbp_reconstruction.m │ ├── astra_create_proj_geom.m │ ├── astra_create_projector.m │ ├── astra_create_reconstruction.m │ ├── astra_create_reconstruction_cuda.m │ ├── astra_create_sino.m │ ├── astra_create_sino3d_cuda.m │ ├── astra_create_sino_cuda.m │ ├── astra_create_sino_gpu.m │ ├── astra_create_sino_sampling.m │ ├── astra_create_vol_geom.m │ ├── astra_data_gui.fig │ ├── astra_data_gui.m │ ├── astra_data_op.m │ ├── astra_data_op_mask.m │ ├── astra_downsample_sinogram.m │ ├── astra_geom_2vec.m │ ├── astra_geom_postalignment.m │ ├── astra_geom_size.m │ ├── astra_geom_superresolution.m │ ├── astra_imshow.m │ ├── astra_mex.m │ ├── astra_mex_algorithm.m │ ├── astra_mex_data2d.m │ ├── astra_mex_data3d.m │ ├── astra_mex_direct.m │ ├── astra_mex_log.m │ ├── astra_mex_matrix.m │ ├── astra_mex_plugin.m │ ├── astra_mex_projector.m │ ├── astra_mex_projector3d.m │ ├── astra_projector_handle.m │ ├── astra_set_directory.m │ ├── astra_set_gpu_index.m │ ├── astra_struct.m │ ├── compute_rnmp.m │ ├── createOrderART.m │ ├── downsample_sinogram.m │ ├── imreadgs.m │ ├── imresize3D.m │ ├── imscale.m │ ├── imwritesc.m │ ├── kaiserBessel.m │ ├── linspace2.m │ ├── opTomo.m │ ├── opTomo_helper_handle.m │ ├── overlayImage.m │ ├── rebin_fan2par.m │ └── sliceExtractor.m └── vcredist_x64.exe ├── Data └── Readme.md ├── README.md ├── Reconstruction_results └── Readme.md ├── Spot-toolbox ├── +spot │ ├── +rwt │ │ ├── Contents.m │ │ ├── HardTh.m │ │ ├── INSTALL │ │ ├── LICENSE │ │ ├── README │ │ ├── README.spot │ │ ├── SoftTh.m │ │ ├── compile.m │ │ ├── daubcqf.m │ │ ├── denoise.m │ │ ├── makesig.m │ │ ├── mdwt.c │ │ ├── mdwt.dll.old │ │ ├── mdwt.mexa64 │ │ ├── mdwt.mexglx │ │ ├── mdwt.mexmaci │ │ ├── mdwt.mexmaci64 │ │ ├── mdwt.mexw32 │ │ ├── mdwt.mexw64 │ │ ├── mdwt.mhelp │ │ ├── midwt.c │ │ ├── midwt.dll.old │ │ ├── midwt.mexa64 │ │ ├── midwt.mexglx │ │ ├── midwt.mexmaci │ │ ├── midwt.mexmaci64 │ │ ├── midwt.mexw32 │ │ ├── midwt.mexw64 │ │ ├── midwt.mhelp │ │ ├── mirdwt.c │ │ ├── mirdwt.dll.old │ │ ├── mirdwt.mexa64 │ │ ├── mirdwt.mexglx │ │ ├── mirdwt.mexmaci │ │ ├── mirdwt.mexmaci64 │ │ ├── mirdwt.mexw32 │ │ ├── mirdwt.mexw64 │ │ ├── mirdwt.mhelp │ │ ├── mrdwt.c │ │ ├── mrdwt.dll.old │ │ ├── mrdwt.mexa64 │ │ ├── mrdwt.mexglx │ │ ├── mrdwt.mexmaci │ │ ├── mrdwt.mexmaci64 │ │ ├── mrdwt.mexw32 │ │ ├── mrdwt.mexw64 │ │ ├── mrdwt.mhelp │ │ ├── mwsizecompat.h │ │ └── setopt.m │ ├── +solvers │ │ └── lsqr.m │ ├── +utils │ │ ├── SpotTestRunDisplay.m │ │ ├── dct.m │ │ ├── dottest.m │ │ ├── drawDot.m │ │ ├── fdct_c2v.m │ │ ├── fdct_v2c.m │ │ ├── fieldname.m │ │ ├── getOption.m │ │ ├── idct.m │ │ ├── isposintmat.m │ │ ├── isposintscalar.m │ │ ├── optimalBracketing.m │ │ ├── parseOptions.m │ │ └── spottree.m │ ├── counter.m │ ├── gpl.m │ └── path.m ├── @opSpot │ ├── bicg.m │ ├── bicgstab.m │ ├── blkdiag.m │ ├── cgs.m │ ├── char.m │ ├── conj.m │ ├── ctranspose.m │ ├── diag.m │ ├── disp.m │ ├── display.m │ ├── divide.m │ ├── double.m │ ├── drandn.m │ ├── eigs.m │ ├── end.m │ ├── full.m │ ├── gmres.m │ ├── horzcat.m │ ├── imag.m │ ├── inv.m │ ├── isempty.m │ ├── isreal.m │ ├── isscalar.m │ ├── kron.m │ ├── length.m │ ├── lsqr.m │ ├── minres.m │ ├── minus.m │ ├── mldivide.m │ ├── mpower.m │ ├── mrdivide.m │ ├── mtimes.m │ ├── ndims.m │ ├── normest.m │ ├── opSpot.m │ ├── pcg.m │ ├── pinv.m │ ├── plus.m │ ├── qmr.m │ ├── real.m │ ├── rrandn.m │ ├── size.m │ ├── subsasgn.m │ ├── subsref.m │ ├── sum.m │ ├── symmlq.m │ ├── transpose.m │ ├── uminus.m │ ├── uplus.m │ └── vertcat.m ├── COPYING.txt ├── ChangeLog ├── README.md ├── Readme.html ├── VERSION ├── demos │ ├── data │ │ └── WiggumArrest.wav │ ├── demo_haardct.m │ ├── demo_kron.m │ └── demo_shortfourier.m ├── doc │ ├── container_operators.m │ ├── docguide_circulant.m │ ├── docguide_containers.m │ ├── docguide_convolution.m │ ├── docguide_implement.m │ ├── docguide_interpolation.m │ ├── docguide_quick.m │ ├── docguide_sparserecovery.m │ ├── elementary_operators.m │ ├── examples.m │ ├── fast_operators.m │ ├── helptoc.xml │ ├── html │ │ ├── FigSparcoBlockDiag1.png │ │ ├── FigSparcoBlockDiag2.png │ │ ├── FigSparcoBlockDiag3.png │ │ ├── FigSparcoBlockDiag4.png │ │ ├── FigSparcoBlockDiag5.png │ │ ├── FigSparcoBlockDiag6.png │ │ ├── container_operators.html │ │ ├── docguide_circulant.html │ │ ├── docguide_circulant_eq08112.png │ │ ├── docguide_containers.html │ │ ├── docguide_convolution.html │ │ ├── docguide_convolution.png │ │ ├── docguide_convolution_01.png │ │ ├── docguide_convolution_02.png │ │ ├── docguide_convolution_03.png │ │ ├── docguide_convolution_04.png │ │ ├── docguide_convolution_05.png │ │ ├── docguide_convolution_06.png │ │ ├── docguide_convolution_07.png │ │ ├── docguide_convolution_08.png │ │ ├── docguide_convolution_09.png │ │ ├── docguide_convolution_10.png │ │ ├── docguide_convolution_11.png │ │ ├── docguide_convolution_eq27244.png │ │ ├── docguide_convolution_eq46204.png │ │ ├── docguide_convolution_eq57167.png │ │ ├── docguide_convolution_eq91674.png │ │ ├── docguide_implement.html │ │ ├── docguide_interpolation.html │ │ ├── docguide_interpolation.png │ │ ├── docguide_interpolation_01.png │ │ ├── docguide_interpolation_02.png │ │ ├── docguide_interpolation_03.png │ │ ├── docguide_interpolation_04.png │ │ ├── docguide_interpolation_05.png │ │ ├── docguide_interpolation_06.png │ │ ├── docguide_interpolation_07.png │ │ ├── docguide_interpolation_08.png │ │ ├── docguide_interpolation_eq12896.png │ │ ├── docguide_interpolation_eq23167.png │ │ ├── docguide_interpolation_eq28812.png │ │ ├── docguide_interpolation_eq31461.png │ │ ├── docguide_interpolation_eq35427.png │ │ ├── docguide_interpolation_eq39601.png │ │ ├── docguide_interpolation_eq43551.png │ │ ├── docguide_interpolation_eq81342.png │ │ ├── docguide_interpolation_eq84590.png │ │ ├── docguide_interpolation_eq98549.png │ │ ├── docguide_quick.html │ │ ├── docguide_sparserecovery.html │ │ ├── docguide_sparserecovery.png │ │ ├── docguide_sparserecovery_01.png │ │ ├── docguide_sparserecovery_02.png │ │ ├── docguide_sparserecovery_03.png │ │ ├── docguide_sparserecovery_eq24873.png │ │ ├── docguide_sparserecovery_eq33963.png │ │ ├── docguide_sparserecovery_eq46380.png │ │ ├── docguide_sparserecovery_eq70887.png │ │ ├── docguide_sparserecovery_eq84590.png │ │ ├── elementary_operators.html │ │ ├── eqs │ │ │ ├── .eqdepthcache │ │ │ ├── 1281182548146164340-130.png │ │ │ ├── 13440040424-130.png │ │ │ ├── 15360046201-130.png │ │ │ ├── 15488046584-130.png │ │ │ ├── 15616046971-130.png │ │ │ ├── 1658743042909269106-130.png │ │ │ ├── 1783685614375308192-130.png │ │ │ ├── 1842691893509646613-130.png │ │ │ ├── 1948474928759429651-130.png │ │ │ ├── 2027286959554378887-130.png │ │ │ ├── 2106785099964413401-130.png │ │ │ ├── 2493339635157168218-130.png │ │ │ ├── 2577508771177243574-130.png │ │ │ ├── 2625088332809412420-130.png │ │ │ ├── 3187889088634215596-130.png │ │ │ ├── 3417162702478062751-130.png │ │ │ ├── 3609640256411903582-130.png │ │ │ ├── 3779426073040366563-130.png │ │ │ ├── 4083764253005335780-130.png │ │ │ ├── 4202091912812561623-130.png │ │ │ ├── 4284606897481292960-130.png │ │ │ ├── 4335792958679249011-130.png │ │ │ ├── 4455612808563855295-130.png │ │ │ ├── 4525519156661850771-130.png │ │ │ ├── 4546430255957166546-130.png │ │ │ ├── 456479652616958846-130.png │ │ │ ├── 4672496770117087070-130.png │ │ │ ├── 4699383870994164432-130.png │ │ │ ├── 4801692705415458837-130.png │ │ │ ├── 4931800903347339616-130.png │ │ │ ├── 5623997898773497873-130.png │ │ │ ├── 593367982063446580-130.png │ │ │ ├── 593367982063446597-130.png │ │ │ ├── 593367982112446620-130.png │ │ │ ├── 599394731270602054-130.png │ │ │ ├── 6056964723800600849-130.png │ │ │ ├── 6092489849325735727-130.png │ │ │ ├── 6125763626576101756-130.png │ │ │ ├── 6223645544514735503-130.png │ │ │ ├── 6268663443196398682-130.png │ │ │ ├── 6356136762056159946-130.png │ │ │ ├── 6471588101837471346-130.png │ │ │ ├── 6542781286693810121-130.png │ │ │ ├── 6609513926019443163-130.png │ │ │ ├── 6827511244237758208-130.png │ │ │ ├── 6848887057047185851-130.png │ │ │ ├── 6952529034888239997-130.png │ │ │ ├── 7292520996289521568-130.png │ │ │ ├── 7936047678071560-130.png │ │ │ ├── 8320025024-130.png │ │ │ ├── 8448025411-130.png │ │ │ ├── 8576025794-130.png │ │ │ ├── 8701434907964658743-130.png │ │ │ ├── 8704026181-130.png │ │ │ ├── 894134153032610161-130.png │ │ │ ├── 8973993714182097189-130.png │ │ │ ├── 9190896899462041202-130.png │ │ │ ├── 947114261818289046-130.png │ │ │ └── 9856029644-130.png │ │ ├── examples.html │ │ ├── fast_operators.html │ │ ├── htmlhelp │ │ │ ├── Contents.html │ │ │ ├── bicg.html │ │ │ ├── bicgstab.html │ │ │ ├── blkdiag.html │ │ │ ├── cgs.html │ │ │ ├── char.html │ │ │ ├── conj.html │ │ │ ├── ctranspose.html │ │ │ ├── diag.html │ │ │ ├── disp.html │ │ │ ├── display.html │ │ │ ├── divide.html │ │ │ ├── double.html │ │ │ ├── drandn.html │ │ │ ├── eigs.html │ │ │ ├── end.html │ │ │ ├── full.html │ │ │ ├── gmres.html │ │ │ ├── horzcat.html │ │ │ ├── imag.html │ │ │ ├── inv.html │ │ │ ├── isempty.html │ │ │ ├── isreal.html │ │ │ ├── isscalar.html │ │ │ ├── kron.html │ │ │ ├── length.html │ │ │ ├── lsqr.html │ │ │ ├── minres.html │ │ │ ├── minus.html │ │ │ ├── mldivide.html │ │ │ ├── mpower.html │ │ │ ├── mrdivide.html │ │ │ ├── mtimes.html │ │ │ ├── ndims.html │ │ │ ├── normest.html │ │ │ ├── opBernoulli.html │ │ │ ├── opBinary.html │ │ │ ├── opBlockDiag.html │ │ │ ├── opBlockOp.html │ │ │ ├── opCTranspose.html │ │ │ ├── opClass.html │ │ │ ├── opConj.html │ │ │ ├── opConvolve.html │ │ │ ├── opCurvelet.html │ │ │ ├── opDCT.html │ │ │ ├── opDCT2.html │ │ │ ├── opDFT.html │ │ │ ├── opDFT2.html │ │ │ ├── opDiag.html │ │ │ ├── opDictionary.html │ │ │ ├── opDirac.html │ │ │ ├── opEmpty.html │ │ │ ├── opExcise.html │ │ │ ├── opExtend.html │ │ │ ├── opEye.html │ │ │ ├── opFoG.html │ │ │ ├── opFunction.html │ │ │ ├── opGaussian.html │ │ │ ├── opHaar.html │ │ │ ├── opHaar2.html │ │ │ ├── opHadamard.html │ │ │ ├── opHeaviside.html │ │ │ ├── opImag.html │ │ │ ├── opInverse.html │ │ │ ├── opKron.html │ │ │ ├── opMask.html │ │ │ ├── opMatrix.html │ │ │ ├── opMinus.html │ │ │ ├── opOnes.html │ │ │ ├── opOrthogonal.html │ │ │ ├── opPInverse.html │ │ │ ├── opPower.html │ │ │ ├── opReal.html │ │ │ ├── opRestriction.html │ │ │ ├── opSparseBinary.html │ │ │ ├── opSpot.html │ │ │ ├── opStack.html │ │ │ ├── opSubsAsgn.html │ │ │ ├── opSubsRef.html │ │ │ ├── opSum.html │ │ │ ├── opToepGauss.html │ │ │ ├── opToepSign.html │ │ │ ├── opToeplitz.html │ │ │ ├── opTranspose.html │ │ │ ├── opUnaryMinus.html │ │ │ ├── opWavelet.html │ │ │ ├── opWavelet2.html │ │ │ ├── opWindow.html │ │ │ ├── opZeros.html │ │ │ ├── pcg.html │ │ │ ├── pinv.html │ │ │ ├── plus.html │ │ │ ├── qmr.html │ │ │ ├── real.html │ │ │ ├── rrandn.html │ │ │ ├── size.html │ │ │ ├── spotexport.html │ │ │ ├── spotparams.html │ │ │ ├── spotpublish.html │ │ │ ├── spottests.html │ │ │ ├── subsasgn.html │ │ │ ├── subsref.html │ │ │ ├── symmlq.html │ │ │ ├── transpose.html │ │ │ ├── uminus.html │ │ │ ├── uplus.html │ │ │ └── vertcat.html │ │ ├── meta_operators.html │ │ ├── random_ensembles.html │ │ ├── seismic_diagram.png │ │ ├── spot_main_page.html │ │ ├── spot_methods.html │ │ ├── spot_operators.html │ │ └── usingmethods.html │ ├── meta_operators.m │ ├── plotimage.m │ ├── psfGaussian.m │ ├── random_ensembles.m │ ├── spot_main_page.m │ ├── spot_methods.m │ └── spot_operators.m ├── extras │ ├── opBlockOp.m │ └── opSurfacelet.m ├── info.xml ├── opBernoulli.m ├── opBinary.m ├── opBlockDiag.m ├── opBlockOp.m ├── opCTranspose.m ├── opClass.m ├── opConj.m ├── opConvolve.m ├── opCurvelet.m ├── opDCT.m ├── opDCT2.m ├── opDFT.m ├── opDFT2.m ├── opDiag.m ├── opDictionary.m ├── opDirac.m ├── opEmpty.m ├── opExcise.m ├── opExtend.m ├── opEye.m ├── opFoG.m ├── opFunction.m ├── opGaussian.m ├── opHaar.m ├── opHaar2.m ├── opHadamard.m ├── opHeaviside.m ├── opImag.m ├── opInverse.m ├── opKron.m ├── opMask.m ├── opMatrix.m ├── opMinus.m ├── opOnes.m ├── opOrthogonal.m ├── opPInverse.m ├── opPower.m ├── opReal.m ├── opRestriction.m ├── opSparseBinary.m ├── opStack.m ├── opSubsAsgn.m ├── opSubsRef.m ├── opSum.m ├── opToepGauss.m ├── opToepSign.m ├── opToeplitz.m ├── opTranspose.m ├── opUnaryMinus.m ├── opWavelet.m ├── opWavelet2.m ├── opWindow.m ├── opZeros.m ├── spotparams.m ├── spottests.m └── tests │ ├── debugConv.m │ ├── test_char.m │ ├── test_coremethods.m │ ├── test_dottests.m │ ├── test_eigs.m │ ├── test_image_example.m │ ├── test_indexing.m │ ├── test_iterative.m │ ├── test_normest.m │ ├── test_opBernoulli.m │ ├── test_opBinary.m │ ├── test_opBlockDiag.m │ ├── test_opBlockOp.m │ ├── test_opDiag.m │ ├── test_opDictionary.m │ ├── test_opGaussian.m │ ├── test_opHadamard.m │ ├── test_opKron.m │ ├── test_opMatrix.m │ ├── test_opOrthogonal.m │ ├── test_opSparseBinary.m │ ├── test_opToeplitz.m │ ├── test_opWavelet.m │ ├── test_products.m │ ├── test_solves.m │ ├── test_sparsevecs.m │ ├── test_sum.m │ ├── test_tree.m │ └── xunit │ ├── +xunit │ └── +utils │ │ ├── Contents.m │ │ ├── arrayToString.m │ │ ├── compareFloats.m │ │ ├── comparisonMessage.m │ │ ├── containsRegexp.m │ │ ├── generateDoc.m │ │ ├── isAlmostEqual.m │ │ ├── isSetUpString.m │ │ ├── isTearDownString.m │ │ ├── isTestCaseSubclass.m │ │ ├── isTestString.m │ │ ├── parseFloatAssertInputs.m │ │ └── stringToCellArray.m │ ├── CommandWindowTestRunDisplay.m │ ├── Contents.m │ ├── FunctionHandleTestCase.m │ ├── TestCase.m │ ├── TestCaseInDir.m │ ├── TestCaseWithAddPath.m │ ├── TestComponent.m │ ├── TestComponentInDir.m │ ├── TestRunLogger.m │ ├── TestRunMonitor.m │ ├── TestSuite.m │ ├── TestSuiteInDir.m │ ├── assertElementsAlmostEqual.m │ ├── assertEqual.m │ ├── assertExceptionThrown.m │ ├── assertFalse.m │ ├── assertFilesEqual.m │ ├── assertTrue.m │ ├── assertVectorsAlmostEqual.m │ ├── info.xml │ ├── initTestSuite.m │ └── runtests.m ├── TV minimization ├── Buid Mex files.txt ├── TVkernel.m ├── headPhantom.m ├── im3Dnorm.m ├── im3Dnorm_old.m ├── imshow3D.m ├── minimizeTV.m └── sheppLogan3D.m ├── example1.m └── example2.m 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