├── LICENSE ├── README.md ├── basic-data-handling-BAND ├── Book_01.ipynb ├── Book_02.ipynb ├── Book_03.ipynb ├── Book_04.ipynb ├── Book_05.ipynb ├── Book_06.ipynb ├── Book_07.ipynb ├── README.md ├── data │ ├── Results_01.csv │ ├── Results_02.csv │ └── TrackMate-edgeTable.csv ├── environment.yml └── images │ ├── TrackMate-image_01.png │ └── TrackMate-image_02.png ├── basic-data-handling ├── Book_01.ipynb ├── Book_02.ipynb ├── Book_03.ipynb ├── Book_04.ipynb ├── Book_05.ipynb ├── Book_06.ipynb ├── Book_07.ipynb ├── README.md ├── data │ ├── Results_01.csv │ ├── Results_02.csv │ └── TrackMate-edgeTable.csv ├── environment.yml └── images │ ├── TrackMate-image_01.png │ └── TrackMate-image_02.png ├── short-lectures-demos ├── data │ ├── 100x_A_ckitneg_02.oib │ └── rice.tif ├── pyBIAS_2h_240926 │ ├── .ipynb_checkpoints │ │ ├── book-01-rice-example-checkpoint.ipynb │ │ ├── book-02-quick-example-BIAS-checkpoint.ipynb │ │ └── environment-checkpoint.yml │ ├── LICENSE │ ├── README.md │ ├── book-01-rice-example.ipynb │ ├── book-02-quick-example-BIAS.ipynb │ ├── environment.yml │ └── imshow-test.py ├── quick_demo_220503 │ ├── 01_napari_from_script.py │ ├── 02_napari_load_view.ipynb │ ├── 03_segmentation.ipynb │ ├── 04_filtering.ipynb │ ├── 05_quantification.ipynb │ ├── 06_assitant-example.ipynb │ └── environment.yml └── quick_demo_220928 │ ├── 01_napari_from_script.py │ ├── 02_napari_load_view.ipynb │ ├── 03_segmentation.ipynb │ ├── 04_filtering.ipynb │ ├── README.md │ ├── data │ ├── rice.tif │ ├── rice_lbl.tif │ └── rice_mask.tif │ └── environment.yml └── short_examples ├── alignment ├── fast_alignment.ipynb └── im_data.png ├── webknossos └── wk-datasets-annotation-101.ipynb └── zarr-from-tiles ├── data ├── t01.tif ├── t02.tif ├── t03.tif ├── t04.tif ├── t05.tif └── tile_centre.csv └── zarr-minimal-example-tiles.ipynb /LICENSE: -------------------------------------------------------------------------------- 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