├── KL.m ├── README.md ├── ami.m ├── association_score.m ├── association_surprisal_bu.m ├── asymptotic_surprise.m ├── asymptotic_surprise_old.m ├── bincoeff_real.m ├── check_urn_model_validity.m ├── clique.m ├── cluster_similarity.m ├── clustering_entropy.m ├── combinatorics ├── logmultinomial.m ├── logmultinomialstirling.m ├── multinomial.m └── xlogx.m ├── comm_mat.m ├── communicability_bu.m ├── communicability_distance_bu.m ├── communicability_distance_wu.m ├── communicability_wu.m ├── community_robustness_weighted.m ├── community_size2memb.m ├── compute_gamma.m ├── compute_surprise.m ├── consensus_clustering.m ├── consensus_clustering_weighted.m ├── consensus_entropy.m ├── consensus_robustness.m ├── correlation_louvain.m ├── count_comm.m ├── cycle_graph.m ├── data ├── COACT_unthr.mat ├── Coactivation_matrix.gml ├── Coactivation_matrix_bin.adj ├── Coactivation_matrix_bin.net ├── Coactivation_matrix_unthr.mat ├── Coactivation_matrix_weighted.adj ├── Coactivation_matrix_weighted.net ├── Crossley_AAL_regions.txt ├── Crossley_coords_mni.txt ├── Crossley_coords_talairach.td.txt ├── Crossley_coords_talairach.txt ├── Crossley_nodes.txt ├── Crossley_nodes_2.txt ├── Crossley_nodes_mixAAL_talairach.txt ├── GroupAverage_rsfMRI_bin.adj ├── GroupAverage_rsfMRI_binary.net ├── GroupAverage_rsfMRI_matrix.gml ├── GroupAverage_rsfMRI_matrix_unthr.mat ├── GroupAverage_rsfMRI_unthr.adj ├── GroupAverage_rsfMRI_unthr.net ├── GroupAverage_rsfMRI_weighted.adj ├── GroupAverage_rsfMRI_weighted.net ├── RS_unthr.mat ├── celegansneural.adj ├── celegansneural.net ├── dolphins.adj ├── karate.adj ├── lesmis.adj ├── macaque_adj_wgh.txt ├── macaque_dist.txt ├── template_638.nii ├── template_638.txt └── template_638_coords_abbr.txt ├── effcommplot.m ├── experimental ├── asymptotic_surprisecm.m ├── cm_likelihood.m ├── degree_corrected_sbm.m ├── degree_corrected_surprise.m ├── distributionzscoremodularity.m ├── ewrg.m ├── ewrg_prob.m ├── expected_intracluster_ewrg.m ├── expected_intracluster_wrg.m ├── expected_num_edges.m ├── expected_total_weight.m ├── expected_value_er.m ├── experiment_scm.m ├── maxent_null_models.m ├── modularity_er.m ├── percolation_analysis_ewrg.m ├── phicoeff.m ├── phicoeffavg.m ├── random_partition_graph.m ├── randp.m ├── size_giant_component.m ├── spectral_zmodularity.m ├── sumloghypergeometricBE.m ├── surprise_vs_asymptotic.m ├── surprisecm.m ├── surprisewrg.m ├── test_correlation_louvain.m ├── test_ewrg.m ├── test_spectrum_wigner_zmodularity.m ├── test_zscoremodularity_resolution_limit.m ├── testassscore.m ├── testgrafo.m ├── testscm.m ├── testzmod.m ├── total_weight.m ├── ubcmmodularity.m ├── wonder.m ├── wrg.m ├── wrg2.m ├── wrgsurprise.m ├── zmodularity.m └── zscoremodularity.m ├── factor_model.m ├── gen_bnv_pics.m ├── generate_agreement.m ├── generate_agreement_weighted.m ├── generate_connected_components.m ├── graph_laplacian.m ├── group2membership.m ├── hashimoto.m ├── hierarchical_community_detection.m ├── image_to_network.m ├── imagesctxt.m ├── isoctave.m ├── k_regular.m ├── kdesmooth.m ├── kinkext.m ├── laplacian_eigenplot.m ├── logC.m ├── logHyperProbability.m ├── logbincoeff.m ├── max_ent_config_naive_gradient_descent.m ├── membership2groups.m ├── membership_agreement.m ├── membership_similarity.m ├── method_best.m ├── method_memberships.m ├── modularity.m ├── modularity_old.m ├── multiple_similarity.m ├── multiple_similarity2.m ├── multislice_pair_labeling.m ├── munkres.m ├── nearcorr.m ├── nearestSPD.m ├── nonbacktracking.m ├── norm_conf_mat.m ├── number_connected_components.m ├── number_of_edges.m ├── pair_labeling.m ├── parmethod_best.m ├── parmethod_memberships.m ├── part_coeff_rand.m ├── partition_params.m ├── plfit.m ├── powerlaw_membership.m ├── reindex_membership.m ├── reorder_membership.m ├── ring_of_cliques.m ├── ring_of_custom_cliques.m ├── rmt_community_louvain.m ├── robustness_configuration_interp_und.m ├── robustness_edge_weight_und.m ├── run_cluster_similarity.m ├── rwalkent.m ├── scomponents.m ├── secs2hms.m ├── shrinkage_cov.m ├── significance.m ├── smi.m ├── sort_group_by_size.m ├── sparse_to_csr.m ├── sparsify_large_mat.m ├── spectral_density.m ├── star_of_custom_cliques.m ├── sumFactorial.m ├── sumLogProbabilities.m ├── sumRange.m ├── surprisal.m ├── surprise.m ├── threshold_by_giant_component.m ├── threshold_by_num_edges.m ├── topological_plot.m ├── write_brainet.m ├── write_brainet_community.m ├── write_gml.m ├── write_sparse_matrix_to_edgeslist.m ├── write_sparse_matrix_to_pajek.m ├── writetoEdgesList.m ├── writetoPAJ_labels.m └── writetoPAJ_labels_coords.m /KL.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/KL.m -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/README.md -------------------------------------------------------------------------------- /ami.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/ami.m -------------------------------------------------------------------------------- /association_score.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/association_score.m -------------------------------------------------------------------------------- /association_surprisal_bu.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/association_surprisal_bu.m -------------------------------------------------------------------------------- /asymptotic_surprise.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/asymptotic_surprise.m -------------------------------------------------------------------------------- /asymptotic_surprise_old.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/asymptotic_surprise_old.m -------------------------------------------------------------------------------- /bincoeff_real.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/bincoeff_real.m -------------------------------------------------------------------------------- /check_urn_model_validity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/check_urn_model_validity.m -------------------------------------------------------------------------------- /clique.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/clique.m -------------------------------------------------------------------------------- /cluster_similarity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/cluster_similarity.m -------------------------------------------------------------------------------- /clustering_entropy.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/clustering_entropy.m -------------------------------------------------------------------------------- /combinatorics/logmultinomial.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/combinatorics/logmultinomial.m -------------------------------------------------------------------------------- /combinatorics/logmultinomialstirling.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/combinatorics/logmultinomialstirling.m -------------------------------------------------------------------------------- /combinatorics/multinomial.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/combinatorics/multinomial.m -------------------------------------------------------------------------------- /combinatorics/xlogx.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/combinatorics/xlogx.m -------------------------------------------------------------------------------- /comm_mat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/comm_mat.m -------------------------------------------------------------------------------- /communicability_bu.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/communicability_bu.m -------------------------------------------------------------------------------- /communicability_distance_bu.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/communicability_distance_bu.m -------------------------------------------------------------------------------- /communicability_distance_wu.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/communicability_distance_wu.m -------------------------------------------------------------------------------- /communicability_wu.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/communicability_wu.m -------------------------------------------------------------------------------- /community_robustness_weighted.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/community_robustness_weighted.m -------------------------------------------------------------------------------- /community_size2memb.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/community_size2memb.m -------------------------------------------------------------------------------- /compute_gamma.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/compute_gamma.m -------------------------------------------------------------------------------- /compute_surprise.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/compute_surprise.m -------------------------------------------------------------------------------- /consensus_clustering.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/consensus_clustering.m -------------------------------------------------------------------------------- /consensus_clustering_weighted.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/consensus_clustering_weighted.m -------------------------------------------------------------------------------- /consensus_entropy.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/consensus_entropy.m -------------------------------------------------------------------------------- /consensus_robustness.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/consensus_robustness.m -------------------------------------------------------------------------------- /correlation_louvain.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/correlation_louvain.m -------------------------------------------------------------------------------- /count_comm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/count_comm.m -------------------------------------------------------------------------------- /cycle_graph.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/cycle_graph.m -------------------------------------------------------------------------------- /data/COACT_unthr.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/COACT_unthr.mat -------------------------------------------------------------------------------- /data/Coactivation_matrix.gml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Coactivation_matrix.gml -------------------------------------------------------------------------------- /data/Coactivation_matrix_bin.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Coactivation_matrix_bin.adj -------------------------------------------------------------------------------- /data/Coactivation_matrix_bin.net: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Coactivation_matrix_bin.net -------------------------------------------------------------------------------- /data/Coactivation_matrix_unthr.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Coactivation_matrix_unthr.mat -------------------------------------------------------------------------------- /data/Coactivation_matrix_weighted.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Coactivation_matrix_weighted.adj -------------------------------------------------------------------------------- /data/Coactivation_matrix_weighted.net: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Coactivation_matrix_weighted.net -------------------------------------------------------------------------------- /data/Crossley_AAL_regions.txt: -------------------------------------------------------------------------------- 1 | http://neuro.imm.dtu.dk/wiki/Category:Brain_regions_in_AAL 2 | -------------------------------------------------------------------------------- /data/Crossley_coords_mni.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Crossley_coords_mni.txt -------------------------------------------------------------------------------- /data/Crossley_coords_talairach.td.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Crossley_coords_talairach.td.txt -------------------------------------------------------------------------------- /data/Crossley_coords_talairach.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Crossley_coords_talairach.txt -------------------------------------------------------------------------------- /data/Crossley_nodes.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Crossley_nodes.txt -------------------------------------------------------------------------------- /data/Crossley_nodes_2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Crossley_nodes_2.txt -------------------------------------------------------------------------------- /data/Crossley_nodes_mixAAL_talairach.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/Crossley_nodes_mixAAL_talairach.txt -------------------------------------------------------------------------------- /data/GroupAverage_rsfMRI_bin.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/GroupAverage_rsfMRI_bin.adj -------------------------------------------------------------------------------- /data/GroupAverage_rsfMRI_binary.net: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/GroupAverage_rsfMRI_binary.net -------------------------------------------------------------------------------- /data/GroupAverage_rsfMRI_matrix.gml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/GroupAverage_rsfMRI_matrix.gml -------------------------------------------------------------------------------- /data/GroupAverage_rsfMRI_matrix_unthr.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/GroupAverage_rsfMRI_matrix_unthr.mat -------------------------------------------------------------------------------- /data/GroupAverage_rsfMRI_unthr.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/GroupAverage_rsfMRI_unthr.adj -------------------------------------------------------------------------------- /data/GroupAverage_rsfMRI_unthr.net: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/GroupAverage_rsfMRI_unthr.net -------------------------------------------------------------------------------- /data/GroupAverage_rsfMRI_weighted.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/GroupAverage_rsfMRI_weighted.adj -------------------------------------------------------------------------------- /data/GroupAverage_rsfMRI_weighted.net: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/GroupAverage_rsfMRI_weighted.net -------------------------------------------------------------------------------- /data/RS_unthr.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/RS_unthr.mat -------------------------------------------------------------------------------- /data/celegansneural.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/celegansneural.adj -------------------------------------------------------------------------------- /data/celegansneural.net: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/celegansneural.net -------------------------------------------------------------------------------- /data/dolphins.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/dolphins.adj -------------------------------------------------------------------------------- /data/karate.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/karate.adj -------------------------------------------------------------------------------- /data/lesmis.adj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/lesmis.adj -------------------------------------------------------------------------------- /data/macaque_adj_wgh.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/macaque_adj_wgh.txt -------------------------------------------------------------------------------- /data/macaque_dist.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/macaque_dist.txt -------------------------------------------------------------------------------- /data/template_638.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/template_638.nii -------------------------------------------------------------------------------- /data/template_638.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/template_638.txt -------------------------------------------------------------------------------- /data/template_638_coords_abbr.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/data/template_638_coords_abbr.txt -------------------------------------------------------------------------------- /effcommplot.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/effcommplot.m -------------------------------------------------------------------------------- /experimental/asymptotic_surprisecm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/asymptotic_surprisecm.m -------------------------------------------------------------------------------- /experimental/cm_likelihood.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/cm_likelihood.m -------------------------------------------------------------------------------- /experimental/degree_corrected_sbm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/degree_corrected_sbm.m -------------------------------------------------------------------------------- /experimental/degree_corrected_surprise.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/degree_corrected_surprise.m -------------------------------------------------------------------------------- /experimental/distributionzscoremodularity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/distributionzscoremodularity.m -------------------------------------------------------------------------------- /experimental/ewrg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/ewrg.m -------------------------------------------------------------------------------- /experimental/ewrg_prob.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/ewrg_prob.m -------------------------------------------------------------------------------- /experimental/expected_intracluster_ewrg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/expected_intracluster_ewrg.m -------------------------------------------------------------------------------- /experimental/expected_intracluster_wrg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/expected_intracluster_wrg.m -------------------------------------------------------------------------------- /experimental/expected_num_edges.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/expected_num_edges.m -------------------------------------------------------------------------------- /experimental/expected_total_weight.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/expected_total_weight.m -------------------------------------------------------------------------------- /experimental/expected_value_er.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/expected_value_er.m -------------------------------------------------------------------------------- /experimental/experiment_scm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/experiment_scm.m -------------------------------------------------------------------------------- /experimental/maxent_null_models.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/maxent_null_models.m -------------------------------------------------------------------------------- /experimental/modularity_er.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/modularity_er.m -------------------------------------------------------------------------------- /experimental/percolation_analysis_ewrg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/percolation_analysis_ewrg.m -------------------------------------------------------------------------------- /experimental/phicoeff.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/phicoeff.m -------------------------------------------------------------------------------- /experimental/phicoeffavg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/phicoeffavg.m -------------------------------------------------------------------------------- /experimental/random_partition_graph.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/random_partition_graph.m -------------------------------------------------------------------------------- /experimental/randp.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/randp.m -------------------------------------------------------------------------------- /experimental/size_giant_component.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/size_giant_component.m -------------------------------------------------------------------------------- /experimental/spectral_zmodularity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/spectral_zmodularity.m -------------------------------------------------------------------------------- /experimental/sumloghypergeometricBE.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/sumloghypergeometricBE.m -------------------------------------------------------------------------------- /experimental/surprise_vs_asymptotic.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/surprise_vs_asymptotic.m -------------------------------------------------------------------------------- /experimental/surprisecm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/surprisecm.m -------------------------------------------------------------------------------- /experimental/surprisewrg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/surprisewrg.m -------------------------------------------------------------------------------- /experimental/test_correlation_louvain.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/test_correlation_louvain.m -------------------------------------------------------------------------------- /experimental/test_ewrg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/test_ewrg.m -------------------------------------------------------------------------------- /experimental/test_spectrum_wigner_zmodularity.m: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /experimental/test_zscoremodularity_resolution_limit.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/test_zscoremodularity_resolution_limit.m -------------------------------------------------------------------------------- /experimental/testassscore.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/testassscore.m -------------------------------------------------------------------------------- /experimental/testgrafo.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/testgrafo.m -------------------------------------------------------------------------------- /experimental/testscm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/testscm.m -------------------------------------------------------------------------------- /experimental/testzmod.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/testzmod.m -------------------------------------------------------------------------------- /experimental/total_weight.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/total_weight.m -------------------------------------------------------------------------------- /experimental/ubcmmodularity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/ubcmmodularity.m -------------------------------------------------------------------------------- /experimental/wonder.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/wonder.m -------------------------------------------------------------------------------- /experimental/wrg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/wrg.m -------------------------------------------------------------------------------- /experimental/wrg2.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/wrg2.m -------------------------------------------------------------------------------- /experimental/wrgsurprise.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/wrgsurprise.m -------------------------------------------------------------------------------- /experimental/zmodularity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/zmodularity.m -------------------------------------------------------------------------------- /experimental/zscoremodularity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/experimental/zscoremodularity.m -------------------------------------------------------------------------------- /factor_model.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/factor_model.m -------------------------------------------------------------------------------- /gen_bnv_pics.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/gen_bnv_pics.m -------------------------------------------------------------------------------- /generate_agreement.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/generate_agreement.m -------------------------------------------------------------------------------- /generate_agreement_weighted.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/generate_agreement_weighted.m -------------------------------------------------------------------------------- /generate_connected_components.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/generate_connected_components.m -------------------------------------------------------------------------------- /graph_laplacian.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/graph_laplacian.m -------------------------------------------------------------------------------- /group2membership.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/group2membership.m -------------------------------------------------------------------------------- /hashimoto.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/hashimoto.m -------------------------------------------------------------------------------- /hierarchical_community_detection.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/hierarchical_community_detection.m -------------------------------------------------------------------------------- /image_to_network.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/image_to_network.m -------------------------------------------------------------------------------- /imagesctxt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/imagesctxt.m -------------------------------------------------------------------------------- /isoctave.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/isoctave.m -------------------------------------------------------------------------------- /k_regular.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/k_regular.m -------------------------------------------------------------------------------- /kdesmooth.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/kdesmooth.m -------------------------------------------------------------------------------- /kinkext.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/kinkext.m -------------------------------------------------------------------------------- /laplacian_eigenplot.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/laplacian_eigenplot.m -------------------------------------------------------------------------------- /logC.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/logC.m -------------------------------------------------------------------------------- /logHyperProbability.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/logHyperProbability.m -------------------------------------------------------------------------------- /logbincoeff.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/logbincoeff.m -------------------------------------------------------------------------------- /max_ent_config_naive_gradient_descent.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/max_ent_config_naive_gradient_descent.m -------------------------------------------------------------------------------- /membership2groups.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/membership2groups.m -------------------------------------------------------------------------------- /membership_agreement.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/membership_agreement.m -------------------------------------------------------------------------------- /membership_similarity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/membership_similarity.m -------------------------------------------------------------------------------- /method_best.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/method_best.m -------------------------------------------------------------------------------- /method_memberships.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/method_memberships.m -------------------------------------------------------------------------------- /modularity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/modularity.m -------------------------------------------------------------------------------- /modularity_old.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/modularity_old.m -------------------------------------------------------------------------------- /multiple_similarity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/multiple_similarity.m -------------------------------------------------------------------------------- /multiple_similarity2.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/multiple_similarity2.m -------------------------------------------------------------------------------- /multislice_pair_labeling.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/multislice_pair_labeling.m -------------------------------------------------------------------------------- /munkres.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/munkres.m -------------------------------------------------------------------------------- /nearcorr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/nearcorr.m -------------------------------------------------------------------------------- /nearestSPD.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/nearestSPD.m -------------------------------------------------------------------------------- /nonbacktracking.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/nonbacktracking.m -------------------------------------------------------------------------------- /norm_conf_mat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/norm_conf_mat.m -------------------------------------------------------------------------------- /number_connected_components.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/number_connected_components.m -------------------------------------------------------------------------------- /number_of_edges.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/number_of_edges.m -------------------------------------------------------------------------------- /pair_labeling.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/pair_labeling.m -------------------------------------------------------------------------------- /parmethod_best.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/parmethod_best.m -------------------------------------------------------------------------------- /parmethod_memberships.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/parmethod_memberships.m -------------------------------------------------------------------------------- /part_coeff_rand.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/part_coeff_rand.m -------------------------------------------------------------------------------- /partition_params.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/partition_params.m -------------------------------------------------------------------------------- /plfit.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/plfit.m -------------------------------------------------------------------------------- /powerlaw_membership.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/powerlaw_membership.m -------------------------------------------------------------------------------- /reindex_membership.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/reindex_membership.m -------------------------------------------------------------------------------- /reorder_membership.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/reorder_membership.m -------------------------------------------------------------------------------- /ring_of_cliques.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/ring_of_cliques.m -------------------------------------------------------------------------------- /ring_of_custom_cliques.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/ring_of_custom_cliques.m -------------------------------------------------------------------------------- /rmt_community_louvain.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/rmt_community_louvain.m -------------------------------------------------------------------------------- /robustness_configuration_interp_und.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/robustness_configuration_interp_und.m -------------------------------------------------------------------------------- /robustness_edge_weight_und.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/robustness_edge_weight_und.m -------------------------------------------------------------------------------- /run_cluster_similarity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/run_cluster_similarity.m -------------------------------------------------------------------------------- /rwalkent.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/rwalkent.m -------------------------------------------------------------------------------- /scomponents.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/scomponents.m -------------------------------------------------------------------------------- /secs2hms.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/secs2hms.m -------------------------------------------------------------------------------- /shrinkage_cov.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/shrinkage_cov.m -------------------------------------------------------------------------------- /significance.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/significance.m -------------------------------------------------------------------------------- /smi.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/smi.m -------------------------------------------------------------------------------- /sort_group_by_size.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/sort_group_by_size.m -------------------------------------------------------------------------------- /sparse_to_csr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/sparse_to_csr.m -------------------------------------------------------------------------------- /sparsify_large_mat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/sparsify_large_mat.m -------------------------------------------------------------------------------- /spectral_density.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/spectral_density.m -------------------------------------------------------------------------------- /star_of_custom_cliques.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/star_of_custom_cliques.m -------------------------------------------------------------------------------- /sumFactorial.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/sumFactorial.m -------------------------------------------------------------------------------- /sumLogProbabilities.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/sumLogProbabilities.m -------------------------------------------------------------------------------- /sumRange.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/sumRange.m -------------------------------------------------------------------------------- /surprisal.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/surprisal.m -------------------------------------------------------------------------------- /surprise.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/surprise.m -------------------------------------------------------------------------------- /threshold_by_giant_component.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/threshold_by_giant_component.m -------------------------------------------------------------------------------- /threshold_by_num_edges.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/threshold_by_num_edges.m -------------------------------------------------------------------------------- /topological_plot.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/topological_plot.m -------------------------------------------------------------------------------- /write_brainet.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/write_brainet.m -------------------------------------------------------------------------------- /write_brainet_community.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/write_brainet_community.m -------------------------------------------------------------------------------- /write_gml.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/write_gml.m -------------------------------------------------------------------------------- /write_sparse_matrix_to_edgeslist.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/write_sparse_matrix_to_edgeslist.m -------------------------------------------------------------------------------- /write_sparse_matrix_to_pajek.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/write_sparse_matrix_to_pajek.m -------------------------------------------------------------------------------- /writetoEdgesList.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/writetoEdgesList.m -------------------------------------------------------------------------------- /writetoPAJ_labels.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/writetoPAJ_labels.m -------------------------------------------------------------------------------- /writetoPAJ_labels_coords.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CarloNicolini/communityalg/HEAD/writetoPAJ_labels_coords.m --------------------------------------------------------------------------------