├── .gitignore ├── LICENSE ├── Notebook ├── CellTracksColab_Custom.ipynb ├── CellTracksColab_Dimensionality_Reduction.ipynb ├── CellTracksColab_Distance_to_ROI.ipynb ├── CellTracksColab_TrackMate.ipynb ├── CellTracksColab_TrackMate_Plate.ipynb ├── CellTracksColab_Track_Clustering.ipynb ├── CellTracksColab_Viewer.ipynb └── latest_version.txt ├── README.md ├── Wiki ├── .txt ├── Balancing.png ├── CellTracksColab_logo.png ├── Directionality_Plot.png ├── Distance_to_ROI.png ├── Fingerprint.png ├── HDBSCAN.png ├── Kolmogorov-Smirnov Test heatmaps.png ├── Mean_speed_Plot.png ├── RipleyL.png ├── RipleyL_conditions.png ├── Screenshot Google Drive.png ├── Screenshot compare tracks.png ├── Screenshot data to use.png ├── Screenshot dendograms.png ├── Screenshot filter.png ├── Screenshot install.png ├── Screenshot load your data.png ├── Screenshot plot example.png ├── Screenshot tracks.png ├── Screenshot1.png ├── Screenshot2.png ├── Screenshot3.png ├── Screenshot4.png ├── Screenshot5.png ├── Screenshot6.png ├── Screenshot7.png ├── Screenshot8.png ├── UMAP_2d.png ├── before after Resampling.png ├── coordinates.png ├── dendograms.png └── old_pictures │ ├── Directionality_Plot.png │ ├── Mean_speed_Plot.png │ ├── Screenshot Google Drive.png │ ├── Screenshot compare tracks.png │ ├── Screenshot filter.png │ ├── Screenshot install.png │ ├── Screenshot load your data.png │ ├── Screenshot tracks.png │ ├── Screenshot2.png │ └── Screenshot4.png ├── celltracks ├── BoxPlots_Statistics.py ├── Dimensionality_Reduction.py ├── Distance_to_ROI.py ├── Track_Clustering.py ├── Track_Metrics.py ├── Track_Plots.py ├── __init__.py ├── data_loader.py └── xml_loader.py ├── environment.yml └── requirements.txt /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CellMigrationLab/CellTracksColab/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: 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