├── .DS_Store ├── .Rbuildignore ├── .Rhistory ├── .Rproj.user ├── E744F726 │ ├── cpp-definition-cache │ ├── pcs │ │ ├── files-pane.pper │ │ ├── source-pane.pper │ │ ├── windowlayoutstate.pper │ │ └── workbench-pane.pper │ ├── rmd-outputs │ ├── saved_source_markers │ └── sources │ │ └── prop │ │ ├── 12539448 │ │ ├── 114EB63C │ │ ├── 205BF8B │ │ ├── 231CBF00 │ │ ├── 2D298375 │ │ ├── 399D3215 │ │ ├── 39B6C5F1 │ │ ├── 4A39EE64 │ │ ├── 562C53B3 │ │ ├── 6F3CF5AD │ │ ├── 8B4D075E │ │ ├── 96BF54FF │ │ ├── A6071B94 │ │ ├── ADC1833B │ │ ├── C3D81A1E │ │ ├── CD4A83A3 │ │ ├── F3111240 │ │ └── INDEX └── shared │ └── notebooks │ ├── 108C5CD8-tidyMicro_vignette │ └── 1 │ │ └── s │ │ └── chunks.json │ ├── C8EF497F-tidy_micro_vignette │ └── 1 │ │ ├── E744F726EF74BB9C │ │ └── chunks.json │ │ └── s │ │ └── chunks.json │ ├── patch-chunk-names │ └── paths ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── .DS_Store ├── Data_BPD_Class.R ├── Data_BPD_Clin.R ├── Data_BPD_Family.R ├── Data_BPD_Order.R ├── Data_BPD_Phylum.R ├── Data_MRSA_Clin.R ├── Data_MRSA_Gen.R ├── Williamson_funs.R ├── alpha_div.R ├── alpha_div_helper.R ├── bb_agg_bar.R ├── bb_bars.R ├── bb_bars_helper.R ├── bb_mods.R ├── bb_mods_helper.R ├── beta_divs.R ├── beta_heatmap.R ├── box_plot.R ├── cor_heatmap.R ├── cor_rocky_mtn.R ├── filter_funs.R ├── filter_funs_helper.R ├── micro_PERMANOVA.R ├── micro_PERMANOVA_helper.R ├── micro_alpha_reg.R ├── micro_chisq.R ├── micro_forest.R ├── micro_heatmap.R ├── micro_otu.R ├── micro_pca.R ├── micro_pca_helper.R ├── micro_rank_sum.R ├── micro_rocky_mtn.R ├── nb_bars.R ├── nb_bars_helper.R ├── nb_mods.R ├── nb_mods_helper.R ├── pca_3d.R ├── pca_helper.R ├── pull_lev.R ├── ra_bars.R ├── rocky_mtn_helper.R ├── taxa_summary.R ├── three_mode_pca.R ├── tidy_micro.R ├── tidy_micro_helper.R ├── utils-pipe.R └── utils-tidy-eval.R ├── README.Rmd ├── README.md ├── data ├── bpd_cla.rda ├── bpd_clin.rda ├── bpd_fam.rda ├── bpd_ord.rda ├── bpd_phy.rda ├── mrsa_clin.rda └── mrsa_gen.rda ├── man ├── alpha_div.Rd ├── bb_bars.Rd ├── bb_mods.Rd ├── beta_div.Rd ├── beta_heatmap.Rd ├── bpd_cla.Rd ├── bpd_clin.Rd ├── bpd_fam.Rd ├── bpd_ord.Rd ├── bpd_phy.Rd ├── cor_heatmap.Rd ├── cor_rocky_mtn.Rd ├── micro_PERMANOVA.Rd ├── micro_alpha_reg.Rd ├── micro_chisq.Rd ├── micro_forest.Rd ├── micro_heatmap.Rd ├── micro_otu.Rd ├── micro_pca.Rd ├── micro_rank_sum.Rd ├── micro_rocky_mtn.Rd ├── mrsa_clin.Rd ├── mrsa_gen.Rd ├── nb_bars.Rd ├── nb_mods.Rd ├── otu_filter.Rd ├── pca_3d.Rd ├── pipe.Rd ├── pull_lev.Rd ├── ra_bars.Rd ├── taxa_boxplot.Rd ├── taxa_summary.Rd ├── three_mode.Rd ├── tidy_micro.Rd └── tidyeval.Rd ├── tests ├── .DS_Store ├── testthat.R └── testthat │ ├── .DS_Store │ ├── test_alpha_div.R │ ├── test_bb_bars.R │ ├── test_beta_heatmap.R │ ├── test_chisq_rank_sum.R │ ├── test_cor_heatmap.R │ ├── test_cor_rocky_mtn.R │ ├── test_micro_forest.R │ ├── test_micro_heatmap.R │ ├── test_micro_pca.R │ ├── test_micro_rocky_mtn.R │ ├── test_nb_bars.R │ ├── test_otu_filters.R │ ├── 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