├── .gitattributes ├── .gitignore ├── LICENSE ├── README.md ├── assets └── pacpaint.png ├── coords └── tiles_coords_tcga_paad.pkl ├── pacpaint ├── __init__.py ├── data │ ├── __init__.py │ └── dataset.py ├── engine │ ├── feature_extraction │ │ └── imagenet_extraction.py │ ├── pacpaint_bc │ │ ├── core.py │ │ ├── train.py │ │ └── trainer.py │ ├── pacpaint_comp │ │ ├── core.py │ │ ├── train.py │ │ └── trainer.py │ └── pacpaint_neo_cell_type │ │ ├── core.py │ │ ├── infer.py │ │ └── train.py └── models │ ├── __init__.py │ ├── deepmil.py │ ├── extreme_layer.py │ ├── linear.py │ ├── mlp.py │ └── weldon.py └── setup.py /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CharlieCheckpt/pacpaint/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | *.egg-info 2 | __pycache__ 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