├── Data ├── fData.csv ├── feeders in Stage II.csv ├── feeders in Stage III.csv └── pData.csv ├── Figure2B └── tSNE_Fiure2B.csv ├── Figure3A ├── Chemical_reprogramming_trajectory.R ├── Chemical_reprogramming_trajectory.csv └── Chemical_reprogramming_trajectory.tiff ├── LICENSE ├── README.md ├── pre-processing.R ├── tSNE_StageI.R ├── tSNE_StageII.R ├── tSNE_StageII_plot.R └── tSNE_StageI_plot.R /Data/fData.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/Data/fData.csv -------------------------------------------------------------------------------- /Data/feeders in Stage II.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/Data/feeders in Stage II.csv -------------------------------------------------------------------------------- /Data/feeders in Stage III.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/Data/feeders in Stage III.csv -------------------------------------------------------------------------------- /Data/pData.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/Data/pData.csv -------------------------------------------------------------------------------- /Figure2B/tSNE_Fiure2B.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/Figure2B/tSNE_Fiure2B.csv -------------------------------------------------------------------------------- /Figure3A/Chemical_reprogramming_trajectory.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/Figure3A/Chemical_reprogramming_trajectory.R -------------------------------------------------------------------------------- /Figure3A/Chemical_reprogramming_trajectory.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/Figure3A/Chemical_reprogramming_trajectory.csv -------------------------------------------------------------------------------- /Figure3A/Chemical_reprogramming_trajectory.tiff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/Figure3A/Chemical_reprogramming_trajectory.tiff -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/README.md -------------------------------------------------------------------------------- /pre-processing.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/pre-processing.R -------------------------------------------------------------------------------- /tSNE_StageI.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/tSNE_StageI.R -------------------------------------------------------------------------------- /tSNE_StageII.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/tSNE_StageII.R -------------------------------------------------------------------------------- /tSNE_StageII_plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/tSNE_StageII_plot.R -------------------------------------------------------------------------------- /tSNE_StageI_plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengLiLab/CSC2018/HEAD/tSNE_StageI_plot.R --------------------------------------------------------------------------------