├── Code ├── Segmentation │ ├── predict.py │ ├── preprocess.py │ ├── train.py │ ├── unet │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-36.pyc │ │ │ ├── unet_model.cpython-36.pyc │ │ │ └── unet_parts.cpython-36.pyc │ │ ├── unet_model.py │ │ └── unet_parts.py │ └── utils │ │ ├── __pycache__ │ │ ├── data_vis.cpython-36.pyc │ │ ├── dataset.cpython-36.pyc │ │ ├── denoise.cpython-36.pyc │ │ ├── eval.cpython-36.pyc │ │ ├── loss.cpython-36.pyc │ │ ├── predict_tool.cpython-36.pyc │ │ ├── stl2nifti.cpython-36.pyc │ │ ├── stl2nii2.cpython-36.pyc │ │ └── val_metrics.cpython-36.pyc │ │ ├── data_vis.py │ │ ├── dataset.py │ │ ├── denoise.py │ │ ├── eval.py │ │ ├── loss.py │ │ ├── nii2dicomseg.py │ │ ├── nii2stl.py │ │ ├── predict_evaluation.py │ │ ├── stl2nifti.py │ │ ├── stl2nii.py │ │ ├── stl2nii_dixonquant.py │ │ ├── test_nifti2stl.py │ │ ├── test_stl2nifti.py │ │ └── val_metrics.py └── VesselParameter │ ├── compute_centerlines.py │ ├── compute_params.py │ └── compute_vessel_params.py ├── DemoData ├── abdominal_aorta.nii.gz ├── hepatic_inferior_vein.nii.gz ├── hepatic_vein.nii.gz ├── img1.png ├── img2.png ├── img3.png ├── inferior_vena_venous.nii.gz ├── merge.nii.gz ├── model_AA.nii.gz ├── model_IVC.nii.gz ├── model_hepatic.nii.gz ├── model_liver_vessel.nii.gz ├── model_portal.nii.gz └── portal_vein.nii.gz ├── Features └── vessel_params.xls ├── ProcessedData ├── abdominal_aorta_centerlines.vtk ├── hepatic_vein_centerlines.vtk └── portal_vein_centerlines.vtk └── README.md /Code/Segmentation/predict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChengYanHuPI/HVPG/HEAD/Code/Segmentation/predict.py -------------------------------------------------------------------------------- /Code/Segmentation/preprocess.py: -------------------------------------------------------------------------------- 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