├── .gitignore ├── README.md ├── code ├── 01 data preprocessing │ └── Split_Inputdata.py ├── 02 feature selection │ ├── .Rhistory │ ├── 01 investigate_DEG_DMP.R │ └── 02 Annotate_DMP.py ├── 03 hyperparameter search │ └── BayesianOpt_HpParm_Search.py └── 04 prediction │ ├── AD_Prediction_DNN.py │ └── AD_Prediction_ML.py └── dataset ├── DEG_list.tsv ├── DMP_list.tsv ├── allforDNN_ge_sample.tsv └── allforDNN_me_sample.tsv /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/README.md -------------------------------------------------------------------------------- /code/01 data preprocessing/Split_Inputdata.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/code/01 data preprocessing/Split_Inputdata.py -------------------------------------------------------------------------------- /code/02 feature selection/.Rhistory: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /code/02 feature selection/01 investigate_DEG_DMP.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/code/02 feature selection/01 investigate_DEG_DMP.R -------------------------------------------------------------------------------- /code/02 feature selection/02 Annotate_DMP.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/code/02 feature selection/02 Annotate_DMP.py -------------------------------------------------------------------------------- /code/03 hyperparameter search/BayesianOpt_HpParm_Search.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/code/03 hyperparameter search/BayesianOpt_HpParm_Search.py -------------------------------------------------------------------------------- /code/04 prediction/AD_Prediction_DNN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/code/04 prediction/AD_Prediction_DNN.py -------------------------------------------------------------------------------- /code/04 prediction/AD_Prediction_ML.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/code/04 prediction/AD_Prediction_ML.py -------------------------------------------------------------------------------- /dataset/DEG_list.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/dataset/DEG_list.tsv -------------------------------------------------------------------------------- /dataset/DMP_list.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/dataset/DMP_list.tsv -------------------------------------------------------------------------------- /dataset/allforDNN_ge_sample.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/dataset/allforDNN_ge_sample.tsv -------------------------------------------------------------------------------- /dataset/allforDNN_me_sample.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ChihyunPark/DNN_for_ADprediction/HEAD/dataset/allforDNN_me_sample.tsv --------------------------------------------------------------------------------