├── .github └── workflows │ ├── documentation-ci.yml │ └── python-publish.yml ├── .gitignore ├── LICENSE ├── README.md ├── data ├── HATS46b │ ├── HATS_46b.fits │ └── HATS_46b_reference.csv ├── PSLS │ ├── 0012069449.csv │ └── 0012069449_with_transit.csv ├── TESS │ └── TIC_10863087_LC.csv ├── data_readme └── interim │ └── mcmc_chains │ └── HATS46b.pkl ├── docs ├── assets │ ├── logo.png │ └── transit_animation.webm ├── comparison_with_simple_kernel.ipynb ├── index.md ├── quickstart.ipynb ├── stellar_variability.ipynb ├── transit.ipynb └── transmission_spectrum.ipynb ├── figures ├── HATS46b │ ├── light_curve_models.pdf │ └── transmission_spectrum.pdf ├── animations │ ├── quickstart_animation.webm │ ├── transit_animation.gif │ └── transit_animation.webm ├── kernel_comparison │ ├── comparison_corner_plot.pdf │ ├── data_plot.pdf │ └── model_comparison_lc_plot.pdf ├── schematics │ ├── binary_kernel_tree.pdf │ └── binary_kernel_tree.svg ├── stellar_variability │ ├── data_plot.pdf │ ├── extrapolation_history_plot.pdf │ ├── extrapolation_plot.pdf │ ├── interpolation_plot.pdf │ └── particle_interpolation_plot.pdf └── transit_fitting │ ├── corner_plot.pdf │ ├── lc_prediction_plot.pdf │ └── lightcurve_plot.pdf ├── gallifrey ├── __init__.py ├── data.py ├── gpconfig.py ├── inference │ ├── __init__.py │ ├── hmc.py │ ├── parameter_rejuvenation.py │ ├── rejuvenation.py │ ├── smc.py │ ├── state.py │ └── transforms.py ├── kernels │ ├── __init__.py │ ├── atoms.py │ ├── library.py │ ├── prior.py │ └── tree.py ├── model.py ├── moves │ ├── __init__.py │ ├── acceptance_probability.py │ ├── detach_attach.py │ ├── noise_proposal.py │ ├── particle_move.py │ └── subtree_replace.py ├── parameter.py ├── particles.py ├── schedule.py └── utils │ ├── __init__.py │ ├── probability_calculations.py │ ├── tree_helper.py │ └── typing.py ├── mkdocs.yml ├── model_checkpoints ├── HATS46b │ ├── final_state_FWB01.pkl │ ├── final_state_FWB02.pkl │ ├── final_state_FWB03.pkl │ ├── final_state_FWB04.pkl │ ├── final_state_FWB05.pkl │ ├── final_state_FWB06.pkl │ ├── final_state_FWB07.pkl │ ├── final_state_FWB08.pkl │ ├── final_state_FWB09.pkl │ ├── final_state_FWB10.pkl │ ├── final_state_FWB11.pkl │ ├── final_state_FWB12.pkl │ ├── final_state_FWB13.pkl │ ├── final_state_FWB14.pkl │ ├── final_state_FWB15.pkl │ ├── final_state_FWB16.pkl │ ├── final_state_FWB17.pkl │ ├── final_state_FWB18.pkl │ ├── final_state_FWB19.pkl │ ├── final_state_FWB21.pkl │ ├── final_state_FWB22.pkl │ ├── final_state_FWB23.pkl │ ├── final_state_FWB24.pkl │ ├── final_state_FWB25.pkl │ ├── final_state_FWB26.pkl │ ├── final_state_FWL.pkl │ ├── history_FWB01.pkl │ ├── history_FWB02.pkl │ ├── history_FWB03.pkl │ ├── history_FWB04.pkl │ ├── history_FWB05.pkl │ ├── history_FWB06.pkl │ ├── history_FWB07.pkl │ ├── history_FWB08.pkl │ ├── history_FWB09.pkl │ ├── history_FWB10.pkl │ ├── history_FWB11.pkl │ ├── history_FWB12.pkl │ ├── history_FWB13.pkl │ ├── history_FWB14.pkl │ ├── history_FWB15.pkl │ ├── history_FWB16.pkl │ ├── history_FWB17.pkl │ ├── history_FWB18.pkl │ ├── history_FWB19.pkl │ ├── history_FWB21.pkl │ ├── history_FWB22.pkl │ ├── history_FWB23.pkl │ ├── history_FWB24.pkl │ ├── history_FWB25.pkl │ ├── history_FWB26.pkl │ └── history_FWL.pkl ├── checkpoint_readme ├── kernel_comparison_learned │ ├── final_state.pkl │ └── history.pkl ├── kernel_comparison_rbf │ ├── final_state.pkl │ └── history.pkl ├── mcmc_comparison_learned_many_rounds │ ├── final_state.pkl │ └── history.pkl ├── psls_deep │ ├── final_state.pkl │ └── history.pkl ├── psls_shallow │ ├── final_state.pkl │ └── history.pkl ├── quickstart_example │ ├── final_state.pkl │ └── history.pkl ├── stellar_variability_extrapolation │ ├── final_state.pkl │ └── history.pkl └── stellar_variability_interpolation │ ├── final_state.pkl │ └── history.pkl ├── notebooks ├── comparison_with_simple_kernel.ipynb ├── quickstart.ipynb ├── quickstart_animation.ipynb ├── stellar_variability.ipynb ├── transit.ipynb ├── transit_animations.ipynb └── 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