├── 5-atlas-subcortical ├── README.md ├── label-names.csv ├── labels │ ├── brain1_labels.mnc │ ├── brain2_labels.mnc │ ├── brain3_labels.mnc │ ├── brain4_labels.mnc │ └── brain5_labels.mnc ├── labels_manual │ ├── brain1_labels.mnc │ ├── brain2_labels.mnc │ ├── brain3_labels.mnc │ ├── brain4_labels.mnc │ └── brain5_labels.mnc └── surfaces │ ├── 5atlas_gp_left.obj │ ├── 5atlas_gp_right.obj │ ├── 5atlas_striatum_left.obj │ ├── 5atlas_striatum_right.obj │ ├── 5atlas_thalamus_left.obj │ └── 5atlas_thalamus_right.obj ├── LICENCE.txt ├── README.md ├── amygdala ├── README.md ├── label-names.csv └── labels │ ├── brain1_labels.mnc │ ├── brain2_labels.mnc │ ├── brain3_labels.mnc │ ├── brain4_labels.mnc │ └── brain5_labels.mnc ├── bin ├── .obj2stl.sh.swp ├── obj2stl.sh └── vtk-polydata-to-stl.py ├── cerebellum ├── README.md ├── label-names.csv └── labels │ ├── brain1_labels.mnc │ ├── brain2_labels.mnc │ ├── brain3_labels.mnc │ ├── brain4_labels.mnc │ └── brain5_labels.mnc ├── colin27-subcortical ├── FSL │ ├── HistThal.xml │ ├── HistThal │ │ ├── HistThal-labels-1mm.nii.gz │ │ └── HistThal-labels-2mm.nii.gz │ └── HistThalAtlas_FSL_README.txt ├── README.md ├── colin_striatum_subdivisions_RMINC.csv ├── colin_tgps_RMINC.csv ├── colin_thalamus_subdivisions_RMINC.csv ├── full_histology.csv ├── label-names-striatum-subdivisions.csv ├── label-names-thalamus-globus_pallidus-striatum.csv ├── label-names-thalamus-subdivisions.csv ├── labels │ ├── full_subcortical_histology.mnc │ ├── striatum-subdivisions.mnc │ ├── thalamus-globus_pallidus-striatum.mnc │ └── thalamus-subdivisions.mnc ├── stl │ ├── globus_pallidus-left.stl │ ├── globus_pallidus-right.stl │ ├── globus_pallidus.stl │ ├── striatum-left.stl │ ├── striatum-right.stl │ ├── striatum.stl │ ├── thalamus-left.stl │ ├── thalamus-right.stl │ └── thalamus.stl └── surfaces │ ├── globus_pallidus-left-labels.txt │ ├── globus_pallidus-left.obj │ ├── globus_pallidus-right-labels.txt │ ├── globus_pallidus-right.obj │ ├── striatum-left.obj │ ├── striatum-right.obj │ ├── striatum-subdivisions-left-labels.txt │ ├── striatum-subdivisions-right-labels.txt │ ├── thalamus-left.obj │ ├── thalamus-right.obj │ ├── thalamus-subdivisions-left-labels.txt │ └── thalamus-subdivisions-right-labels.txt ├── habenula ├── README.md ├── label-names.csv └── labels │ ├── brain1_labels.mnc │ ├── brain2_labels.mnc │ ├── brain3_labels.mnc │ ├── brain4_labels.mnc │ └── brain5_labels.mnc ├── hippocampus-subfields ├── README.md ├── label-names.csv ├── labels │ ├── brain1_labels.mnc │ ├── brain2_labels.mnc │ ├── brain3_labels.mnc │ ├── brain4_labels.mnc │ └── brain5_labels.mnc ├── model │ └── model_labels.mnc └── surfaces │ ├── left_2700.obj │ ├── left_CA1.obj │ ├── left_CA2.CA3.obj │ ├── left_CA4.DG.obj │ ├── left_SR.obj │ ├── left_sub.obj │ ├── new_lefthc.obj │ ├── new_righthc.obj │ ├── right_2700.obj │ ├── right_CA1.obj │ ├── right_CA2.CA3.obj │ ├── right_CA4.DG.obj │ ├── right_SR.obj │ └── right_sub.obj ├── hippocampus-whitematter ├── README.md ├── label-names.csv └── labels │ ├── brain1_labels.mnc │ ├── brain2_labels.mnc │ ├── brain3_labels.mnc │ ├── brain4_labels.mnc │ └── brain5_labels.mnc └── mni_models ├── README.md ├── label-names.csv ├── minc ├── PD25-T1GRE-template-0.5mm_labels.mnc ├── PD25-T1GRE-template-1mm_labels.mnc ├── PD25-T1MPRAGE-template-0.5mm_labels.mnc ├── PD25-T1MPRAGE-template-1mm_labels.mnc ├── average305_t1_tal_lin_labels.mnc ├── colin27_t1_tal_hires_labels.mnc ├── colin27_t1_tal_lin_labels.mnc ├── fix.sh ├── mni_icbm152_t1_tal_nlin_asym_09a_labels.mnc ├── mni_icbm152_t1_tal_nlin_asym_09b_hires_labels.mnc ├── mni_icbm152_t1_tal_nlin_asym_09c_labels.mnc ├── mni_icbm152_t1_tal_nlin_sym_09a_labels.mnc ├── mni_icbm152_t1_tal_nlin_sym_09c_labels.mnc ├── nihpd_asym_00-02_t1w_labels.mnc ├── nihpd_asym_02-05_t1w_labels.mnc ├── nihpd_asym_04.5-08.5_t1w_labels.mnc ├── nihpd_asym_04.5-18.5_t1w_labels.mnc ├── nihpd_asym_05-08_t1w_labels.mnc ├── nihpd_asym_07.0-11.0_t1w_labels.mnc ├── nihpd_asym_07.5-13.5_t1w_labels.mnc ├── nihpd_asym_08-11_t1w_labels.mnc ├── nihpd_asym_10.0-14.0_t1w_labels.mnc ├── nihpd_asym_11-14_t1w_labels.mnc ├── nihpd_asym_13.0-18.5_t1w_labels.mnc ├── nihpd_asym_14-17_t1w_labels.mnc ├── nihpd_asym_17-21_t1w_labels.mnc ├── nihpd_asym_21-27_t1w_labels.mnc ├── nihpd_asym_27-33_t1w_labels.mnc ├── nihpd_asym_33-44_t1w_labels.mnc ├── nihpd_asym_44-60_t1w_labels.mnc ├── nihpd_sym_04.5-08.5_t1w_labels.mnc ├── nihpd_sym_04.5-18.5_t1w_labels.mnc ├── nihpd_sym_07.0-11.0_t1w_labels.mnc ├── nihpd_sym_07.5-13.5_t1w_labels.mnc ├── nihpd_sym_10.0-14.0_t1w_labels.mnc └── nihpd_sym_13.0-18.5_t1w_labels.mnc └── nifti ├── PD25-T1GRE-template-0.5mm_labels.nii.gz ├── PD25-T1GRE-template-1mm_labels.nii.gz ├── PD25-T1MPRAGE-template-0.5mm_labels.nii.gz ├── PD25-T1MPRAGE-template-1mm_labels.nii.gz ├── average305_t1_tal_lin_labels.nii.gz ├── colin27_t1_tal_hires_labels.nii.gz ├── colin27_t1_tal_lin_labels.nii.gz ├── mni_icbm152_t1_tal_nlin_asym_09a_labels.nii.gz ├── 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