├── .DS_Store ├── .gitignore ├── .gitmodules ├── LICENSE ├── README.md ├── __init__.py ├── actflowcomp ├── .ipynb_checkpoints │ ├── __init__-checkpoint.py │ ├── actflowcalc-checkpoint.py │ ├── actflowtest-checkpoint.py │ └── noiseceilingcalc-checkpoint.py ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ ├── actflowcalc.cpython-37.pyc │ ├── actflowtest.cpython-37.pyc │ └── noiseceilingcalc.cpython-37.pyc ├── actflowcalc.py ├── actflowtest.py └── noiseceilingcalc.py ├── connectivity_estimation ├── .ipynb_checkpoints │ ├── __init__-checkpoint.py │ ├── calcactivity_parcelwise_noncircular-checkpoint.py │ ├── calcconn_parcelwise_noncircular-checkpoint.py │ ├── corrcoefconn-checkpoint.py │ ├── multregconn-checkpoint.py │ ├── partial_corrconn-checkpoint.py │ ├── pc_multregconn-checkpoint.py │ └── pcaFC-checkpoint.py ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ ├── calcactivity_parcelwise_noncircular.cpython-37.pyc │ ├── calcactivity_parcelwise_noncircular_surface.cpython-37.pyc │ ├── calcconn_parcelwise_noncircular.cpython-37.pyc │ ├── calcconn_parcelwise_noncircular_surface.cpython-37.pyc │ ├── combinedFC.cpython-37.pyc │ ├── corrcoefconn.cpython-37.pyc │ ├── graphicalLassoCV.cpython-37.pyc │ ├── multipleregressionconnectivity.cpython-37.pyc │ ├── multregconn.cpython-37.pyc │ ├── partial_corrconn.cpython-37.pyc │ ├── pc_multregconn.cpython-37.pyc │ └── pcaFC.cpython-37.pyc ├── calcactivity_parcelwise_noncircular.py ├── calcconn_parcelwise_noncircular.py ├── combinedFC.py ├── corrcoefconn.py ├── graphicalLassoCV.py ├── lassoCV.py ├── multregconn.py ├── partial_corrconn.py └── pc_multregconn.py ├── dependencies ├── __init__.py └── __pycache__ │ └── __init__.cpython-37.pyc ├── docs ├── .DS_Store ├── CABNP_cortex.png ├── Figure01_Proof1.png ├── HCP_example.html ├── Peterson_etal_fig.png ├── _config.yml ├── bootstrap │ ├── css │ │ ├── bootstrap-theme.css │ │ ├── bootstrap-theme.css.map │ │ ├── bootstrap-theme.min.css │ │ ├── bootstrap.css │ │ ├── bootstrap.css.map │ │ └── bootstrap.min.css │ ├── fonts │ │ ├── glyphicons-halflings-regular.eot │ │ ├── glyphicons-halflings-regular.svg │ │ ├── glyphicons-halflings-regular.ttf │ │ └── glyphicons-halflings-regular.woff │ └── js │ │ ├── bootstrap.js │ │ └── bootstrap.min.js ├── favicon.ico ├── images │ ├── .ipynb_checkpoints │ │ ├── CABNP_cortex-checkpoint.png │ │ └── actflowfigure1-checkpoint.png │ ├── ActflowGeneral.pdf │ ├── ActflowGeneral.png │ ├── CABNP_cortex.pdf │ ├── CABNP_cortex.png │ ├── ENNfigure.ai │ ├── ENNfigure.png │ ├── Figure1.jpg │ ├── actflow_repoimage.png │ ├── actflow_repoimage.psd │ ├── actflowfigure1.ai │ ├── actflowfigure1.png │ ├── actflowfigure_predictiontesting.png │ ├── example_multregactual.jpg │ └── example_multregpred.jpg └── index.html ├── examples ├── .ipynb_checkpoints │ ├── Empirical8f_REPLICATION_ActivityXConnectivity_TaskAnalysisHCP_SignificantActivity_aCompCorX24pXVolterra-checkpoint.ipynb │ └── HCP_example-checkpoint.ipynb ├── CABNP_cortex.png ├── Figure01_Proof1.png ├── HCP_DataUseTerms.txt ├── HCP_example.html ├── HCP_example.ipynb ├── HCP_example_data │ ├── HCP_example_restrun1_subj100206_data.h5 │ ├── HCP_example_restrun1_subj100408_data.h5 │ ├── HCP_example_restrun1_subj108020_data.h5 │ ├── HCP_example_restrun1_subj108222_data.h5 │ ├── HCP_example_restrun1_subj117930_data.h5 │ ├── HCP_example_restrun1_subj118124_data.h5 │ ├── HCP_example_restrun1_subj126325_data.h5 │ ├── HCP_example_restrun1_subj126426_data.h5 │ ├── HCP_example_restrun1_subj133928_data.h5 │ ├── HCP_example_restrun1_subj134021_data.h5 │ ├── HCP_example_restrun1_subj143224_data.h5 │ ├── HCP_example_restrun1_subj144832_data.h5 │ ├── HCP_example_restrun1_subj153934_data.h5 │ ├── HCP_example_restrun1_subj164636_data.h5 │ ├── HCP_example_restrun1_subj174437_data.h5 │ ├── HCP_example_restrun1_subj183034_data.h5 │ ├── HCP_example_restrun1_subj194443_data.h5 │ ├── HCP_example_restrun1_subj204521_data.h5 │ ├── HCP_example_restrun1_subj212823_data.h5 │ ├── HCP_example_restrun1_subj268749_data.h5 │ ├── HCP_example_restrun1_subj322224_data.h5 │ ├── HCP_example_restrun1_subj385450_data.h5 │ ├── HCP_example_restrun1_subj463040_data.h5 │ ├── HCP_example_restrun1_subj529953_data.h5 │ ├── HCP_example_restrun1_subj587664_data.h5 │ ├── HCP_example_restrun1_subj656253_data.h5 │ ├── HCP_example_restrun1_subj731140_data.h5 │ ├── HCP_example_restrun1_subj814548_data.h5 │ ├── HCP_example_restrun1_subj877269_data.h5 │ ├── HCP_example_restrun1_subj978578_data.h5 │ └── HCP_example_taskactivations_data.h5 ├── Peterson_etal_fig.png ├── __init__.py ├── __pycache__ │ └── __init__.cpython-37.pyc ├── actflowfigure1.png ├── out.png ├── restActflowPred_MultRegFC.pdf ├── restActflowPred_MultRegFC2.pdf └── restActflowPred_MultRegFC3.pdf ├── matlab_code ├── .ipynb_checkpoints │ └── PCmultregressionconnectivity-checkpoint.m ├── PCmultregressionconnectivity.m ├── actflowmapping.m └── multregressionconnectivity.m ├── model_compare ├── .ipynb_checkpoints │ ├── __init__-checkpoint.py │ ├── model_compare-checkpoint.py │ └── model_compare_predicted_to_actual-checkpoint.py ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ ├── model_compare.cpython-37.pyc │ └── model_compare_predicted_to_actual.cpython-37.pyc ├── model_compare.py └── model_compare_predicted_to_actual.py ├── network_definitions ├── .ipynb_checkpoints │ ├── __init__-checkpoint.py │ ├── calc_removal_coords-checkpoint.py │ ├── dilateParcels-checkpoint.py │ └── prep_noncirc-checkpoint.py ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ └── calc_removal_coords.cpython-37.pyc ├── calc_removal_coords.py ├── coords_to_remove_indices_cortexonly_data.h5 ├── coords_to_remove_indices_cortexsubcortex_data.h5 ├── dilateParcels.py ├── parcels_to_remove_indices_cortexonly_data.h5 ├── parcels_to_remove_indices_cortexsubcortex_data.h5 └── prep_noncirc.py ├── simulations ├── __init__.py └── __pycache__ │ └── 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