├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── R ├── getCounts.R ├── plot_mostdepth.R ├── plot_mostdepth_tn.R ├── prepAscat.R ├── prepAscat_t.R └── segment_logR.R ├── README.md ├── ezASCAT.Rproj ├── inst └── extdata │ ├── GRCh37_SNP6.tsv.gz │ └── GRCh38_SNP6.tsv.gz ├── man ├── get_counts.Rd ├── plot_mosdepth.Rd ├── plot_mosdepth_tn.Rd ├── prep_ascat.Rd ├── prep_ascat_t.Rd └── segment_logR.Rd ├── scripts └── compile_snp6.R └── src ├── Makevars └── ntcounts.c /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CompEpigen/ezASCAT/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CompEpigen/ezASCAT/HEAD/.gitignore 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