├── .github └── workflows │ └── publish.yml ├── .gitignore ├── .pre-commit-config.yaml ├── CHANGELOG.md ├── CONTRIBUTING.md ├── LICENSE ├── MANIFEST.in ├── README.md ├── im2deep ├── __init__.py ├── __main__.py ├── _exceptions.py ├── calibrate.py ├── im2deep.py ├── models │ ├── TIMS │ │ ├── full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.keras │ │ ├── full_hc_peprec_CCS_v4_8c22d89667368f2f02ad996469ba157e.keras │ │ └── full_hc_peprec_CCS_v4_cb975cfdd4105f97efa0b3afffe075cc.keras │ └── TIMS_multi │ │ ├── multi_output.ckpt │ │ ├── multi_output_backbone.ckpt │ │ └── multi_output_pre_revision.ckpt ├── predict_multi.py ├── reference_data │ ├── multi_reference_ccs.gz │ └── reference_ccs.zip └── utils.py └── pyproject.toml /.github/workflows/publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CompOmics/IM2Deep/HEAD/.github/workflows/publish.yml 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