├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── findRatePerClass.py ├── neutral_model_estimator ├── __init__.py ├── ancestral_repeats.py ├── filter.py └── rescale.py ├── pytest.ini └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/README.md -------------------------------------------------------------------------------- /findRatePerClass.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/findRatePerClass.py -------------------------------------------------------------------------------- /neutral_model_estimator/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/neutral_model_estimator/__init__.py -------------------------------------------------------------------------------- /neutral_model_estimator/ancestral_repeats.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/neutral_model_estimator/ancestral_repeats.py -------------------------------------------------------------------------------- /neutral_model_estimator/filter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/neutral_model_estimator/filter.py -------------------------------------------------------------------------------- /neutral_model_estimator/rescale.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/neutral_model_estimator/rescale.py -------------------------------------------------------------------------------- /pytest.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/pytest.ini -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ComparativeGenomicsToolkit/neutral-model-estimator/HEAD/setup.py --------------------------------------------------------------------------------