├── .gitignore ├── .travis.yml ├── LICENSE ├── Makefile ├── README.md ├── docker └── Dockerfile ├── docs ├── Makefile ├── _static │ ├── example_model.gif │ └── smaller.gif ├── api.rst ├── auto_examples │ ├── auto_examples_jupyter.zip │ ├── auto_examples_python.zip │ ├── debug_predict.ipynb │ ├── debug_predict.py │ ├── debug_predict.rst │ ├── debug_predict_codeobj.pickle │ ├── images │ │ ├── sphx_glr_plot_export_nifti_001.png │ │ ├── sphx_glr_plot_export_nifti_002.png │ │ ├── sphx_glr_plot_filtering_001.png │ │ ├── sphx_glr_plot_filtering_002.png │ │ ├── sphx_glr_plot_filtering_003.png │ │ ├── sphx_glr_plot_filtering_004.png │ │ ├── sphx_glr_plot_labels_001.png │ │ ├── sphx_glr_plot_labels_002.png │ │ ├── sphx_glr_plot_load_example_data_001.png │ │ ├── sphx_glr_plot_load_example_data_002.png │ │ ├── sphx_glr_plot_load_nifti_001.png │ │ ├── sphx_glr_plot_model_001.png │ │ ├── sphx_glr_plot_model_002.png │ │ ├── sphx_glr_plot_nifti_001.png │ │ ├── sphx_glr_plot_nifti_002.png │ │ ├── sphx_glr_plot_predict_001.png │ │ ├── sphx_glr_plot_predict_002.png │ │ ├── sphx_glr_plot_simulate_bo_001.png │ │ ├── sphx_glr_plot_simulate_bo_002.png │ │ ├── sphx_glr_plot_simulate_mo_001.png │ │ ├── sphx_glr_plot_update_model_001.png │ │ ├── sphx_glr_plot_update_model_002.png │ │ └── thumb │ │ │ ├── sphx_glr_debug_predict_thumb.png │ │ │ ├── sphx_glr_index_brain_object_thumb.png │ │ │ ├── sphx_glr_make_gif_thumb.png │ │ │ ├── sphx_glr_model_add_subtract_thumb.png │ │ │ ├── sphx_glr_nifti_get_slice_thumb.png │ │ │ ├── sphx_glr_plot_export_nifti_thumb.png │ │ │ ├── sphx_glr_plot_filtering_thumb.png │ │ │ ├── sphx_glr_plot_labels_thumb.png │ │ │ ├── sphx_glr_plot_load_example_data_thumb.png │ │ │ ├── sphx_glr_plot_load_nifti_thumb.png │ │ │ ├── sphx_glr_plot_model_thumb.png │ │ │ ├── sphx_glr_plot_nifti_thumb.png │ │ │ ├── sphx_glr_plot_predict_thumb.png │ │ │ ├── sphx_glr_plot_simulate_bo_thumb.png │ │ │ ├── sphx_glr_plot_simulate_mo_thumb.png │ │ │ ├── sphx_glr_plot_update_model_thumb.png │ │ │ ├── sphx_glr_resampleing_thumb.png │ │ │ └── sphx_glr_tal_to_mni_thumb.png │ ├── index.rst │ ├── index_brain_object.ipynb │ ├── index_brain_object.py │ ├── index_brain_object.rst │ ├── index_brain_object_codeobj.pickle │ ├── make_gif.ipynb │ ├── make_gif.py │ ├── make_gif.rst │ ├── make_gif_codeobj.pickle │ ├── model_add_subtract.ipynb │ ├── model_add_subtract.py │ ├── model_add_subtract.rst │ ├── model_add_subtract_codeobj.pickle │ ├── nifti_get_slice.ipynb │ ├── nifti_get_slice.py │ ├── nifti_get_slice.rst │ ├── nifti_get_slice_codeobj.pickle │ ├── plot_export_nifti.ipynb │ ├── plot_export_nifti.py │ ├── plot_export_nifti.py.md5 │ ├── plot_export_nifti.rst │ ├── plot_export_nifti_codeobj.pickle │ ├── plot_filtering.ipynb │ ├── plot_filtering.py │ ├── plot_filtering.py.md5 │ ├── plot_filtering.rst │ ├── plot_filtering_codeobj.pickle │ ├── plot_labels.ipynb │ ├── plot_labels.py │ ├── plot_labels.py.md5 │ ├── plot_labels.rst │ ├── plot_labels_codeobj.pickle │ ├── plot_load_example_data.ipynb │ ├── plot_load_example_data.py │ ├── plot_load_example_data.py.md5 │ ├── plot_load_example_data.rst │ ├── plot_load_example_data_codeobj.pickle │ ├── plot_load_nifti.ipynb │ ├── plot_load_nifti.py │ ├── plot_load_nifti.py.md5 │ ├── plot_load_nifti.rst │ ├── plot_load_nifti_codeobj.pickle │ ├── plot_model.ipynb │ ├── plot_model.py │ ├── plot_model.py.md5 │ ├── plot_model.rst │ ├── plot_model_codeobj.pickle │ ├── plot_nifti.ipynb │ ├── plot_nifti.py │ ├── plot_nifti.py.md5 │ ├── plot_nifti.rst │ ├── plot_nifti_codeobj.pickle │ ├── plot_predict.ipynb │ ├── plot_predict.py │ ├── plot_predict.py.md5 │ ├── plot_predict.rst │ ├── plot_predict_codeobj.pickle │ ├── plot_simulate_bo.ipynb │ ├── plot_simulate_bo.py │ ├── plot_simulate_bo.py.md5 │ ├── plot_simulate_bo.rst │ ├── plot_simulate_bo_codeobj.pickle │ ├── plot_simulate_mo.ipynb │ ├── plot_simulate_mo.py │ ├── plot_simulate_mo.py.md5 │ ├── plot_simulate_mo.rst │ ├── plot_simulate_mo_codeobj.pickle │ ├── plot_update_model.ipynb │ ├── plot_update_model.py │ ├── plot_update_model.py.md5 │ ├── plot_update_model.rst │ ├── plot_update_model_codeobj.pickle │ ├── resampleing.ipynb │ ├── resampleing.py │ ├── resampleing.rst │ ├── resampleing_codeobj.pickle │ ├── tal_to_mni.ipynb │ ├── tal_to_mni.py │ ├── tal_to_mni.rst │ └── tal_to_mni_codeobj.pickle ├── conf.py ├── doc_requirements.txt ├── index.rst ├── make.bat ├── modules │ └── generated │ │ ├── superEEG.Brain.__init__.examples │ │ ├── superEEG.Brain.examples │ │ ├── superEEG.Brain.get_data.examples │ │ ├── superEEG.Brain.get_locs.examples │ │ ├── superEEG.Brain.get_zscore_data.examples │ │ ├── superEEG.Brain.info.examples │ │ ├── superEEG.Brain.next.examples │ │ ├── superEEG.Brain.plot_data.examples │ │ ├── superEEG.Brain.plot_locs.examples │ │ ├── superEEG.Brain.remove_elecs.examples │ │ ├── superEEG.Brain.save.examples │ │ ├── superEEG.Brain.to_nifti.examples │ │ ├── superEEG.Brain.to_nii.examples │ │ ├── superEEG.Brain.to_pickle.examples │ │ ├── superEEG.Model.__init__.examples │ │ ├── superEEG.Model.examples │ │ ├── superEEG.Model.expand.examples │ │ ├── superEEG.Model.info.examples │ │ ├── superEEG.Model.next.examples │ │ ├── superEEG.Model.plot.examples │ │ ├── superEEG.Model.predict.examples │ │ ├── superEEG.Model.save.examples │ │ ├── superEEG.Model.to_pickle.examples │ │ ├── superEEG.Model.update.examples │ │ ├── superEEG.brain.Brain.examples │ │ ├── superEEG.create_cov.examples │ │ ├── superEEG.filter_elecs.examples │ │ ├── superEEG.filter_subj.examples │ │ ├── superEEG.load.examples │ │ ├── superEEG.loadnii.examples │ │ ├── superEEG.model_compile.examples │ │ ├── superEEG.plot.examples │ │ ├── superEEG.predict.examples │ │ ├── superEEG.set_context.examples │ │ ├── superEEG.simulate_bo.examples │ │ ├── superEEG.simulate_locations.examples │ │ ├── superEEG.simulate_model_bos.examples │ │ ├── superEEG.sort_unique_locs.examples │ │ ├── superEEG.superEEG.Model.examples │ │ ├── superEEG.superEEG.plot.examples │ │ ├── superEEG.superEEG.predict.examples │ │ ├── superEEG.tal2mni.examples │ │ ├── supereeg.Brain.apply_filter.examples │ │ ├── supereeg.Brain.get_filtered_bo.examples │ │ ├── supereeg.Brain.get_slice.examples │ │ ├── supereeg.Brain.resample.examples │ │ ├── supereeg.Brain.update_filter_inds.examples │ │ ├── supereeg.Brain.update_info.examples │ │ ├── supereeg.Model.get_locs.examples │ │ ├── supereeg.Model.get_model.examples │ │ ├── supereeg.Model.get_slice.examples │ │ ├── supereeg.Model.plot_data.examples │ │ ├── supereeg.Model.plot_locs.examples │ │ ├── supereeg.Model.set_locs.examples │ │ ├── supereeg.Nifti.ImageArrayProxy.examples │ │ ├── supereeg.Nifti.__init__.examples │ │ ├── supereeg.Nifti.affine.examples │ │ ├── supereeg.Nifti.as_reoriented.examples │ │ ├── supereeg.Nifti.dataobj.examples │ │ ├── supereeg.Nifti.examples │ │ ├── supereeg.Nifti.files_types.examples │ │ ├── supereeg.Nifti.filespec_to_file_map.examples │ │ ├── supereeg.Nifti.filespec_to_files.examples │ │ ├── supereeg.Nifti.from_file_map.examples │ │ ├── supereeg.Nifti.from_filename.examples │ │ ├── supereeg.Nifti.from_files.examples │ │ ├── supereeg.Nifti.from_image.examples │ │ ├── supereeg.Nifti.get_affine.examples │ │ ├── supereeg.Nifti.get_data.examples │ │ ├── supereeg.Nifti.get_data_dtype.examples │ │ ├── supereeg.Nifti.get_fdata.examples │ │ ├── supereeg.Nifti.get_filename.examples │ │ ├── supereeg.Nifti.get_header.examples │ │ ├── supereeg.Nifti.get_locs.examples │ │ ├── supereeg.Nifti.get_qform.examples │ │ ├── supereeg.Nifti.get_sform.examples │ │ ├── supereeg.Nifti.get_shape.examples │ │ ├── supereeg.Nifti.get_slice.examples │ │ ├── supereeg.Nifti.header.examples │ │ ├── supereeg.Nifti.header_class.examples │ │ ├── supereeg.Nifti.in_memory.examples │ │ ├── supereeg.Nifti.info.examples │ │ ├── supereeg.Nifti.instance_to_filename.examples │ │ ├── supereeg.Nifti.load.examples │ │ ├── supereeg.Nifti.make_file_map.examples │ │ ├── supereeg.Nifti.make_gif.examples │ │ ├── supereeg.Nifti.makeable.examples │ │ ├── supereeg.Nifti.orthoview.examples │ │ ├── supereeg.Nifti.path_maybe_image.examples │ │ ├── supereeg.Nifti.plot_anat.examples │ │ ├── supereeg.Nifti.plot_glass_brain.examples │ │ ├── supereeg.Nifti.rw.examples │ │ ├── supereeg.Nifti.save.examples │ │ ├── supereeg.Nifti.set_data_dtype.examples │ │ ├── supereeg.Nifti.set_filename.examples │ │ ├── supereeg.Nifti.set_qform.examples │ │ ├── supereeg.Nifti.set_sform.examples │ │ ├── supereeg.Nifti.shape.examples │ │ ├── supereeg.Nifti.to_file_map.examples │ │ ├── supereeg.Nifti.to_filename.examples │ │ ├── supereeg.Nifti.to_files.examples │ │ ├── supereeg.Nifti.to_filespec.examples │ │ ├── supereeg.Nifti.uncache.examples │ │ ├── supereeg.Nifti.update_header.examples │ │ ├── supereeg.Nifti.valid_exts.examples │ │ └── supereeg.load_nifti.examples ├── superEEG.Brain.rst ├── superEEG.Model.rst ├── superEEG.create_cov.rst ├── superEEG.filter_elecs.rst ├── superEEG.filter_subj.rst ├── superEEG.load.rst ├── superEEG.loadnii.rst ├── superEEG.model_compile.rst ├── superEEG.set_context.rst ├── superEEG.simulate_bo.rst ├── superEEG.simulate_locations.rst ├── superEEG.simulate_model_bos.rst ├── superEEG.sort_unique_locs.rst ├── superEEG.tal2mni.rst ├── supereeg.Nifti.rst ├── supereeg.load_nifti.rst ├── tutorial.rst └── tutorial │ ├── Makefile │ ├── brain_objects.ipynb │ ├── brain_objects.rst │ ├── brain_objects_files │ ├── brain_objects_23_1.png │ ├── brain_objects_24_0.png │ ├── brain_objects_24_1.png │ ├── brain_objects_25_0.png │ ├── brain_objects_25_1.png │ ├── brain_objects_26_0.png │ ├── brain_objects_26_1.png │ ├── brain_objects_29_0.png │ ├── brain_objects_30_0.png │ ├── brain_objects_32_0.png │ ├── brain_objects_33_0.png │ ├── brain_objects_34_0.png │ ├── brain_objects_37_0.png │ ├── brain_objects_38_0.png │ ├── brain_objects_39_0.png │ ├── brain_objects_40_0.png │ ├── brain_objects_40_1.png │ ├── brain_objects_41_0.png │ ├── brain_objects_43_0.png │ ├── brain_objects_47_0.png │ ├── brain_objects_49_0.png │ ├── brain_objects_4_0.png │ ├── brain_objects_50_0.png │ ├── brain_objects_51_0.png │ ├── brain_objects_52_0.png │ ├── brain_objects_53_0.png │ ├── brain_objects_54_0.png │ ├── brain_objects_55_0.png │ └── brain_objects_57_0.png │ ├── model_objects.ipynb │ ├── model_objects.rst │ ├── model_objects_files │ ├── model_objects_10_0.png │ ├── model_objects_10_1.png │ ├── model_objects_12_0.png │ ├── model_objects_14_0.png │ ├── model_objects_16_0.png │ ├── model_objects_23_0.png │ ├── model_objects_27_0.png │ ├── model_objects_27_2.png │ ├── model_objects_27_4.png │ ├── model_objects_29_0.png │ ├── model_objects_29_2.png │ ├── model_objects_29_4.png │ ├── model_objects_29_5.png │ ├── model_objects_31_0.png │ ├── model_objects_32_2.png │ ├── model_objects_32_3.png │ ├── model_objects_32_5.png │ ├── model_objects_32_6.png │ ├── model_objects_33_1.png │ ├── model_objects_33_3.png │ ├── model_objects_35_0.png │ ├── model_objects_35_1.png │ ├── model_objects_35_3.png │ ├── model_objects_37_1.png │ ├── model_objects_37_3.png │ ├── model_objects_38_0.png │ ├── model_objects_40_0.png │ ├── model_objects_44_1.png │ ├── model_objects_44_3.png │ └── model_objects_47_0.png │ ├── nifti_objects.ipynb │ ├── nifti_objects.rst │ ├── nifti_objects_files │ ├── nifti_objects_11_0.png │ ├── nifti_objects_13_0.png │ ├── nifti_objects_15_0.png │ ├── nifti_objects_17_0.png │ ├── nifti_objects_19_0.png │ └── nifti_objects_6_0.png │ ├── simulate_objects.ipynb │ ├── simulate_objects.rst │ ├── simulate_objects_files │ ├── simulate_objects_12_0.png │ ├── simulate_objects_13_0.png │ ├── simulate_objects_13_1.png │ ├── simulate_objects_14_1.png │ ├── simulate_objects_24_0.png │ ├── simulate_objects_25_0.png │ ├── simulate_objects_25_1.png │ ├── simulate_objects_27_0.png │ ├── simulate_objects_28_0.png │ ├── simulate_objects_28_1.png │ ├── simulate_objects_30_0.png │ ├── simulate_objects_31_0.png │ ├── simulate_objects_33_1.png │ ├── simulate_objects_34_0.png │ ├── simulate_objects_34_1.png │ ├── simulate_objects_35_0.png │ └── simulate_objects_36_0.png │ ├── simulation_for_nb.png │ └── tools │ └── nb_to_doc.py ├── examples ├── README.txt ├── hilbert_huang.py ├── index_brain_object.py ├── make_gif.py ├── make_slices_gif.py ├── model_add_subtract.py ├── mpdpe.py ├── nifti_get_slice.py ├── parallel_gif.py ├── pd.py ├── peak_dev_per_epoch.py ├── peak_deviation.py ├── plot_export_nifti.py ├── plot_filtering.py ├── plot_labels.py ├── plot_load_example_data.py ├── plot_load_nifti.py ├── plot_model.py ├── plot_nifti.py ├── plot_predict.py ├── plot_simulate_bo.py ├── plot_simulate_mo.py ├── plot_update_model.py ├── power.py ├── resampleing.py └── tal_to_mni.py ├── images ├── supereeg.pdf └── supereeg.png ├── requirements.txt ├── setup.py ├── supereeg ├── __init__.py ├── brain.py ├── helpers.py ├── kernel.py ├── load.py ├── location.py ├── model.py ├── nifti.py └── simulate.py └── tests ├── 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