├── .gitignore ├── .vscode └── settings.json ├── Makefile ├── README.md ├── dependency ├── Paradis │ └── paradissort.hpp └── Raduls │ ├── Makefile │ ├── comp_and_swap.h │ ├── defs.h │ ├── exceptions.h │ ├── raduls.h │ ├── record.h │ ├── small_sort.h │ ├── sorting_network.cpp │ └── sorting_network.h ├── include ├── compiletime.h ├── dnabuffer.hpp ├── dnaseq.hpp ├── fastaindex.hpp ├── hashfuncs.hpp ├── hysortk.hpp ├── kmer.hpp ├── kmerops.hpp ├── logger.hpp ├── memcheck.hpp ├── supermer.hpp └── timer.hpp ├── src ├── dnabuffer.cpp ├── dnaseq.cpp ├── fastaindex.cpp ├── hashfuncs.cpp ├── hysortk.cpp ├── kmerops.cpp ├── logger.cpp └── memcheck.cpp └── standalone └── main.cpp /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CornellHPC/HySortK/HEAD/.gitignore -------------------------------------------------------------------------------- /.vscode/settings.json: 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