├── .gitignore ├── LICENSE ├── README.md ├── Writeup.docx ├── Writeup.pdf ├── data ├── MiniKaiRun │ ├── flux_0.json │ ├── flux_1.json │ ├── flux_10.json │ ├── flux_100.json │ ├── flux_101.json │ ├── flux_102.json │ ├── flux_103.json │ ├── flux_104.json │ ├── flux_105.json │ ├── flux_106.json │ ├── flux_107.json │ ├── flux_108.json │ ├── flux_109.json │ ├── flux_11.json │ ├── flux_110.json │ ├── flux_111.json │ ├── flux_112.json │ ├── flux_113.json │ ├── flux_114.json │ ├── flux_115.json │ ├── flux_116.json │ ├── flux_117.json │ ├── flux_118.json │ ├── flux_119.json │ ├── flux_12.json │ ├── flux_120.json │ ├── flux_121.json │ ├── flux_122.json │ ├── flux_123.json │ ├── flux_124.json │ ├── flux_125.json │ ├── flux_126.json │ ├── flux_127.json │ ├── flux_128.json │ ├── flux_129.json │ ├── flux_13.json │ ├── flux_130.json │ ├── flux_131.json │ ├── flux_132.json │ ├── flux_133.json │ ├── flux_134.json │ ├── flux_135.json │ ├── flux_136.json │ ├── flux_137.json │ ├── flux_138.json │ ├── flux_139.json │ ├── flux_14.json │ ├── flux_140.json │ ├── flux_141.json │ ├── flux_142.json │ ├── flux_143.json │ ├── flux_144.json │ ├── flux_145.json │ ├── flux_146.json │ ├── flux_147.json │ ├── flux_148.json │ ├── flux_15.json │ ├── flux_16.json │ ├── flux_17.json │ ├── flux_18.json │ ├── flux_19.json │ ├── flux_2.json │ ├── flux_20.json │ ├── flux_21.json │ ├── flux_22.json │ ├── flux_23.json │ ├── flux_24.json │ ├── flux_25.json │ ├── flux_26.json │ ├── flux_27.json │ ├── flux_28.json │ ├── flux_29.json │ ├── flux_3.json │ ├── flux_30.json │ ├── flux_31.json │ ├── flux_32.json │ ├── flux_33.json │ ├── flux_34.json │ ├── flux_35.json │ ├── flux_36.json │ ├── flux_37.json │ ├── flux_38.json │ ├── flux_39.json │ ├── flux_4.json │ ├── flux_40.json │ ├── flux_41.json │ ├── flux_42.json │ ├── flux_43.json │ ├── flux_44.json │ ├── flux_45.json │ ├── flux_46.json │ ├── flux_47.json │ ├── flux_48.json │ ├── flux_49.json │ ├── flux_5.json │ ├── flux_50.json │ ├── flux_51.json │ ├── flux_52.json │ ├── flux_53.json │ ├── flux_54.json │ ├── flux_55.json │ ├── flux_56.json │ ├── flux_57.json │ ├── flux_58.json │ ├── flux_59.json │ ├── flux_6.json │ ├── flux_60.json │ ├── flux_61.json │ ├── flux_62.json │ ├── flux_63.json │ ├── flux_64.json │ ├── flux_65.json │ ├── flux_66.json │ ├── flux_67.json │ ├── flux_68.json │ ├── flux_69.json │ ├── flux_7.json │ ├── flux_70.json │ ├── flux_71.json │ ├── flux_72.json │ ├── flux_73.json │ ├── flux_74.json │ ├── flux_75.json │ ├── flux_76.json │ ├── flux_77.json │ ├── flux_78.json │ ├── flux_79.json │ ├── flux_8.json │ ├── flux_80.json │ ├── flux_81.json │ ├── flux_82.json │ ├── flux_83.json │ ├── flux_84.json │ ├── flux_85.json │ ├── flux_86.json │ ├── flux_87.json │ ├── flux_88.json │ ├── flux_89.json │ ├── flux_9.json │ ├── flux_90.json │ ├── flux_91.json │ ├── flux_92.json │ ├── flux_93.json │ ├── flux_94.json │ ├── flux_95.json │ ├── flux_96.json │ ├── flux_97.json │ ├── flux_98.json │ └── flux_99.json ├── Minimal.json ├── PreyPred │ ├── data.csv │ ├── flux_0.json │ ├── flux_1.json │ ├── flux_10.json │ ├── flux_11.json │ ├── flux_12.json │ ├── flux_13.json │ ├── flux_14.json │ ├── flux_15.json │ ├── flux_16.json │ ├── flux_17.json │ ├── flux_18.json │ ├── flux_19.json │ ├── flux_2.json │ ├── flux_20.json │ ├── flux_21.json │ ├── flux_22.json │ ├── flux_23.json │ ├── flux_24.json │ ├── flux_25.json │ ├── flux_26.json │ ├── flux_27.json │ ├── flux_28.json │ ├── flux_29.json │ ├── flux_3.json │ ├── flux_30.json │ ├── flux_31.json │ ├── flux_32.json │ ├── flux_33.json │ ├── flux_34.json │ ├── flux_35.json │ ├── flux_36.json │ ├── flux_37.json │ ├── flux_38.json │ ├── flux_39.json │ ├── flux_4.json │ ├── flux_40.json │ ├── flux_41.json │ ├── flux_42.json │ ├── flux_43.json │ ├── flux_44.json │ ├── flux_45.json │ ├── flux_46.json │ ├── flux_47.json │ ├── flux_48.json │ ├── flux_49.json │ ├── flux_5.json │ ├── flux_50.json │ ├── flux_51.json │ ├── flux_52.json │ ├── flux_53.json │ ├── flux_54.json │ ├── flux_55.json │ ├── flux_56.json │ ├── flux_57.json │ ├── flux_58.json │ ├── flux_59.json │ ├── flux_6.json │ ├── flux_60.json │ ├── flux_61.json │ ├── flux_62.json │ ├── flux_63.json │ ├── flux_64.json │ ├── flux_65.json │ ├── flux_66.json │ ├── flux_67.json │ ├── flux_68.json │ ├── flux_69.json │ ├── flux_7.json │ ├── flux_70.json │ ├── flux_71.json │ ├── flux_72.json │ ├── flux_73.json │ ├── flux_74.json │ ├── flux_75.json │ ├── flux_76.json │ ├── flux_77.json │ ├── flux_78.json │ ├── flux_79.json │ ├── flux_8.json │ ├── flux_80.json │ ├── flux_81.json │ ├── flux_82.json │ ├── flux_83.json │ ├── flux_84.json │ ├── flux_85.json │ ├── flux_86.json │ ├── flux_87.json │ ├── flux_88.json │ ├── flux_89.json │ ├── flux_9.json │ ├── flux_90.json │ ├── flux_91.json │ ├── flux_92.json │ ├── flux_93.json │ ├── flux_94.json │ ├── flux_95.json │ └── inputs.ka ├── Real.json ├── flux_0.json ├── flux_1.json ├── flux_10.json ├── flux_11.json ├── flux_12.json ├── flux_13.json ├── flux_14.json ├── flux_15.json ├── flux_16.json ├── flux_17.json ├── flux_18.json ├── flux_19.json ├── flux_2.json ├── flux_20.json ├── flux_21.json ├── flux_22.json ├── flux_23.json ├── flux_24.json ├── flux_25.json ├── flux_26.json ├── flux_27.json ├── flux_28.json ├── flux_29.json ├── flux_3.json ├── flux_30.json ├── flux_31.json ├── flux_32.json ├── flux_33.json ├── flux_34.json ├── flux_35.json ├── flux_36.json ├── flux_37.json ├── flux_38.json ├── flux_39.json ├── flux_4.json ├── flux_40.json ├── flux_41.json ├── flux_42.json ├── flux_43.json ├── flux_44.json ├── flux_5.json ├── flux_6.json ├── flux_7.json ├── flux_8.json ├── flux_9.json ├── global.csv └── miniKaiProb3.zip ├── index.html ├── lib ├── README ├── WebContent │ ├── .jshintrc │ ├── deflate.js │ ├── inflate.js │ ├── mime-types.js │ ├── pako │ │ └── codecs.js │ ├── z-worker.js │ ├── zip-ext.js │ ├── zip-fs.js │ ├── zip.js │ └── zlib-asm │ │ └── codecs.js ├── d3.v4.js └── lodash.js ├── screencaps ├── Buttons.png ├── Cluster1.png ├── Cluster2.png ├── ClusteringThreshold.png ├── Hover.png ├── OverTime.png ├── PinAndMark.png ├── Supplement.png ├── VisibilityThreshold.png └── teaser.png └── src ├── css ├── main.css └── toolbar.css └── js ├── animation.js ├── focusSlider.js ├── forceDirected.js ├── forceDirectedUI.js ├── lineGraph.js ├── main.js ├── paintingManager.js ├── phenotype.js └── sliderUI.js /.gitignore: -------------------------------------------------------------------------------- 1 | d3.min.js 2 | *.DS_Store 3 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2017 UCSC Creative Coding 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # Dynamic Influence Networks for Rule-based Models 2 | 3 | ![alt text](screencaps/teaser.png "Dynamic Influence Networks") 4 | 5 | 6 | DIN Project members: 7 | 8 | Angus Forbes, Andrew Burks, Kristine Lee, and Xing Li (University of Illinois at Chicago); Jean Krivine (Universite Paris Diderot); Pierre Boutillier and Walter Fontana (Harvard Medical School) 9 | 10 | DIN-Viz Software Development: 11 | 12 | Andrew Burks, Kristine Lee, Xing Li (University of Illinois at Chicago) 13 | 14 | 15 | # Installation Instructions 16 | 17 | - Extract the Github repo's contents to a folder of your choice. 18 | - Navigate to the folder (which should now contain an "index.html" file) and use the command: 19 | ```[path to python.exe]\python -m SimpleHTTPServer 8080``` to start the server. If this command cannot start the server, use the command: ```[path to python.exe]\python -m http.server 8080``` instead. 20 | - Go to localhost:8080 to load the visualization. The software was tested on Google Chrome, but should work on other browsers as well. 21 | 22 | Alternatively, the page is hosted using GitHub Pages at https://creativecodinglab.github.io/DynamicInfluenceNetworks/. (Use the "Dataset" menu to load in data/miniKaiProb3.zip to explore a larger example dataset, or choose your own KaSim output - see below.) 23 | 24 | # How to Use 25 | 26 | To load data, please click on the "Dataset" menu on the toolbar to load in individual json files or zipped time series json files. Alternatively, you can drag the files into the application to load the data. 27 | 28 | _Please make sure that the times series json files are in the format name_\__\[0-x]\.json (i.e flux_1.json, flux_2.json etc)_ 29 | 30 | # Background 31 | 32 | For many systems, the specifics regarding the interactions and effects within complex biological systems are unknown. The Kappa Simulator ([KaSim](http://www.kappalanguage.org)) is a stochastic simulator of biological "rules" defined using the Kappa language, used to generate simulations of protein-protein interaction networks. A tool to represent the outputs of these simulations can help systems biologists to better understand the complex systems that they are modeling. This creates a feedback loop between the creation and the visualization of the simulations which iteratively improves both the system models as well as the visual analytics tools which aid in representing and analyzing the biological systems. The current tools do not scale well, are static, cluttered, and can not support time-series visualization. We define the Dynamic Influence Network (DIN) to represent the rules and the influence these rules have on other rules that model the system. Our software tool, DIN-Viz, facilitates the analysis of DINs created from KaSim simulation output. 33 | 34 | # The DIN-Viz Visual Analytics Software 35 | 36 | DIN-Viz utilizes a force-directed network overlaid on top of influence-based clustering information for the Kappa rules (these influences are generated using Kappa Simulator output data). Due to relatively small number of nodes in these protein-protein interaction simulations, along with our threshold clustering method, the threshold is interactively controllable, and the clustering can recompute in real-time. To reduce clutter, the user may choose to manually rearrange areas of the network, as well as hide nodes or edges which fall below the clustering threshold. Individual nodes can also be manually marked and clustered. Time series data based on a sliding time window can be viewed (assuming the proper JSON data files have been loaded). Supplemental visualizations show overviews of the time series data, such as the influence that a selected rule has over other rules in the DIN throughout the simulation. 37 | 38 | # Screenshots 39 | 40 | - Clustering 41 | 42 | ![alt text](screencaps/ClusteringThreshold.png "Clustering effects with different thresholds applied") 43 | 44 | - Hovering 45 | 46 | ![alt text](screencaps/Hover.png "Hover") 47 | 48 | 49 | - Pinning and Marking 50 | 51 | ![alt text](screencaps/PinAndMark.png "Pinning and marking") 52 | 53 | 54 | - Link Visibility 55 | 56 | ![alt text](screencaps/VisibilityThreshold.png "Link visibility with different thresholds applied") 57 | 58 | 59 | - Dynamic Network Animation 60 | 61 | ![alt text](screencaps/OverTime.png "Evolution of DIN over time") 62 | 63 | 64 | 65 | # Demonstration Video 66 | 67 | See a video of DIN-Viz in action [here](https://vimeo.com/195336381), or another newer one [here](https://dl.dropboxusercontent.com/u/571874/DIN-Viz_03312007_hd.mp4). 68 | 69 | 70 | # Article 71 | 72 | Our article, [Rule-based Models for Dynamic Influence Networks](https://creativecoding.soe.ucsc.edu/pdfs/Forbes_DIN-Viz_VAST2017.pdf), describing the DIN representation and the DIN-Viz software is accepted to [IEEE Transactions on Visualization and Computer Graphics](https://creativecoding.soe.ucsc.edu/pdfs/Forbes_DIN-Viz_VAST2017.pdf) and will be presented at [IEEE VIS](http://ieeevis.org/) in October 2017. 73 | 74 | 75 | A. G. Forbes, A. Burks, K. Lee, X. Li, P. Boutillier, J. Krivine, and W. Fontana. Dynamic influence networks for rule-based models. IEEE Transactions on Visualization and Computer Graphics, 24(1), January 2018. 76 | 77 | 78 | @article{ 79 |
    ForbesFontana_TVCG_2018, 80 |
    title = {Dynamic Influence Networks for Rule-based Models}, 81 |
    author = {Angus G. Forbes and Andrew Burks and Kristine Lee and Xing Li and Pierre Boutillier and Jean Krivine and Walter Fontana}, 82 |
    journal = {IEEE Transactions on Visualization and Computer Graphics}, 83 |
    volume = {24}, 84 |
    number = {1}, 85 |
    month = {January}, 86 |
    year = {2018} 87 |
} 88 | -------------------------------------------------------------------------------- /Writeup.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/Writeup.docx -------------------------------------------------------------------------------- /Writeup.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/Writeup.pdf -------------------------------------------------------------------------------- /data/Minimal.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 0.000000e+00, 3 | "bioEndTime" : 2.000070e+01, 4 | "rules" : 5 | ["Perturbations", "a.b", "a.b_op", "ab.c", "mod x1", "a.c", "mod x2"], 6 | "hits" : [0, 986, 600, 2920, 2764, 997, 879], 7 | "fluxs" : 8 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 9 | [0.000000e+00, -2.805324e+00, 8.417340e+00, 1.070723e+01, 0.000000e+00, -1.382619e+00, -1.501420e+00], 10 | [0.000000e+00, 1.836702e+00, -1.878817e+00, -1.901879e+00, 0.000000e+00, 5.847461e-01, 5.311193e-01], 11 | [0.000000e+00, 0.000000e+00, 0.000000e+00, -1.737906e+01, 2.713609e+01, 0.000000e+00, 0.000000e+00], 12 | [0.000000e+00, 0.000000e+00, 0.000000e+00, 1.430737e+01, -2.054881e+01, 9.535350e+00, 0.000000e+00], 13 | [0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00, -2.898415e+00, 2.570269e+01], 14 | [0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00,1.581468e+00, -1.800432e+01]] 15 | } 16 | -------------------------------------------------------------------------------- /data/PreyPred/data.csv: -------------------------------------------------------------------------------- 1 | "[T]", "|predator()|", "|prey()|" 2 | 0., 520, 580 3 | 1., 530, 601 4 | 2., 551, 613 5 | 3., 598, 609 6 | 4., 653, 578 7 | 5., 689, 544 8 | 6., 728, 516 9 | 7., 723, 480 10 | 8., 714, 447 11 | 9., 678, 447 12 | 10., 669, 428 13 | 11., 635, 429 14 | 12., 616, 416 15 | 13., 596, 428 16 | 14., 562, 448 17 | 15., 556, 443 18 | 16., 547, 436 19 | 17., 537, 456 20 | 18., 523, 472 21 | 19., 531, 475 22 | 20., 520, 484 23 | 21., 504, 511 24 | 22., 524, 514 25 | 23., 525, 546 26 | 24., 537, 572 27 | 25., 532, 575 28 | 26., 548, 605 29 | 27., 573, 623 30 | 28., 619, 622 31 | 29., 675, 596 32 | 30., 663, 571 33 | 31., 668, 533 34 | 32., 694, 463 35 | 33., 697, 437 36 | 34., 668, 409 37 | 35., 653, 387 38 | 36., 607, 371 39 | 37., 577, 381 40 | 38., 504, 387 41 | 39., 486, 414 42 | 40., 468, 445 43 | 41., 461, 482 44 | 42., 468, 527 45 | 43., 478, 590 46 | 44., 526, 624 47 | 45., 581, 636 48 | 46., 623, 659 49 | 47., 632, 691 50 | 48., 700, 670 51 | 49., 785, 592 52 | 50., 761, 563 53 | 51., 771, 514 54 | 52., 759, 479 55 | 53., 732, 442 56 | 54., 712, 403 57 | 55., 680, 393 58 | 56., 629, 381 59 | 57., 574, 376 60 | 58., 537, 408 61 | 59., 516, 425 62 | 60., 491, 454 63 | 61., 490, 485 64 | 62., 463, 507 65 | 63., 458, 552 66 | 64., 455, 621 67 | 65., 489, 683 68 | 66., 541, 695 69 | 67., 603, 685 70 | 68., 669, 672 71 | 69., 760, 653 72 | 70., 808, 622 73 | 71., 840, 569 74 | 72., 871, 498 75 | 73., 837, 461 76 | 74., 814, 408 77 | 75., 779, 357 78 | 76., 731, 324 79 | 77., 671, 302 80 | 78., 603, 296 81 | 79., 528, 302 82 | 80., 474, 321 83 | 81., 449, 331 84 | 82., 400, 369 85 | 83., 379, 372 86 | 84., 359, 428 87 | 85., 366, 454 88 | 86., 372, 524 89 | 87., 375, 594 90 | 88., 415, 669 91 | 89., 445, 730 92 | 90., 515, 759 93 | 91., 574, 787 94 | 92., 691, 736 95 | 93., 789, 671 96 | 94., 840, 575 97 | 95., 875, 460 98 | 96., 867, 407 99 | 97., 822, 359 100 | 98., 757, 325 101 | 99., 695, 308 102 | 100., 646, 296 103 | 101., 574, 309 104 | 102., 519, 329 105 | 103., 460, 350 106 | 104., 436, 367 107 | 105., 408, 387 108 | 106., 373, 430 109 | 107., 356, 521 110 | 108., 386, 575 111 | 109., 416, 624 112 | 110., 451, 692 113 | 111., 501, 715 114 | 112., 573, 727 115 | 113., 638, 732 116 | 114., 691, 697 117 | 115., 769, 651 118 | 116., 837, 594 119 | 117., 839, 526 120 | 118., 803, 466 121 | 119., 768, 432 122 | 120., 732, 400 123 | 121., 695, 396 124 | 122., 659, 358 125 | 123., 620, 328 126 | 124., 566, 333 127 | 125., 518, 354 128 | 126., 460, 361 129 | 127., 445, 394 130 | 128., 423, 427 131 | 129., 390, 482 132 | 130., 409, 510 133 | 131., 436, 524 134 | 132., 450, 560 135 | 133., 488, 608 136 | 134., 493, 694 137 | 135., 530, 737 138 | 136., 608, 736 139 | 137., 670, 753 140 | 138., 717, 736 141 | 139., 779, 709 142 | 140., 892, 620 143 | 141., 927, 518 144 | 142., 903, 463 145 | 143., 892, 369 146 | 144., 841, 342 147 | 145., 785, 276 148 | 146., 713, 263 149 | 147., 661, 240 150 | 148., 587, 238 151 | 149., 508, 254 152 | 150., 458, 302 153 | 151., 392, 343 154 | 152., 390, 376 155 | 153., 352, 419 156 | 154., 351, 485 157 | 155., 357, 551 158 | 156., 372, 597 159 | 157., 421, 652 160 | 158., 461, 687 161 | 159., 512, 722 162 | 160., 583, 730 163 | 161., 682, 704 164 | 162., 788, 676 165 | 163., 873, 621 166 | 164., 930, 550 167 | 165., 913, 472 168 | 166., 922, 374 169 | 167., 841, 325 170 | 168., 791, 290 171 | 169., 715, 248 172 | 170., 621, 244 173 | 171., 555, 225 174 | 172., 480, 225 175 | 173., 420, 249 176 | 174., 381, 281 177 | 175., 343, 322 178 | 176., 325, 365 179 | 177., 308, 433 180 | 178., 294, 545 181 | 179., 334, 620 182 | 180., 365, 709 183 | 181., 391, 767 184 | 182., 465, 842 185 | 183., 569, 840 186 | 184., 663, 815 187 | 185., 757, 782 188 | 186., 828, 715 189 | 187., 903, 635 190 | 188., 923, 573 191 | 189., 904, 494 192 | 190., 856, 431 193 | 191., 825, 390 194 | 192., 783, 338 195 | 193., 722, 326 196 | 194., 659, 322 197 | 195., 617, 338 198 | 196., 585, 341 199 | 197., 533, 359 200 | 198., 497, 389 201 | 199., 462, 422 202 | 200., 472, 451 203 | -------------------------------------------------------------------------------- /data/PreyPred/flux_0.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 2.343651e-03, 3 | "bioEndTime" : 1.000042e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1598, 1603, 1751], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.880085e-03, 0.000000e+00, 1.880085e-03], 11 | [0.000000e+00, 0.000000e+00, -1.549244e-03, -1.549244e-03], 12 | [0.000000e+00, -1.886901e-03, 1.563688e-03, -3.261353e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_1.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 2.003678e+00, 3 | "bioEndTime" : 1.200038e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1502, 1634, 1699], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.002958e-03, 0.000000e+00, 2.002958e-03], 11 | [0.000000e+00, 0.000000e+00, -1.494781e-03, -1.494781e-03], 12 | [0.000000e+00, -1.995062e-03, 1.505560e-03, -4.924937e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_10.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 2.000066e+01, 3 | "bioEndTime" : 3.000457e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1660, 1430, 1573], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.749333e-03, 0.000000e+00, 1.749333e-03], 11 | [0.000000e+00, 0.000000e+00, -1.760644e-03, -1.760644e-03], 12 | [0.000000e+00, -1.738054e-03, 1.758015e-03, 1.689099e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_11.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 2.200538e+01, 3 | "bioEndTime" : 3.200062e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1650, 1533, 1702], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.735263e-03, 0.000000e+00, 1.735263e-03], 11 | [0.000000e+00, 0.000000e+00, -1.670534e-03, -1.670534e-03], 12 | [0.000000e+00, -1.741793e-03, 1.671582e-03, -7.311815e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_12.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 2.400294e+01, 3 | "bioEndTime" : 3.400183e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1626, 1660, 1790], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.813916e-03, 0.000000e+00, 1.813916e-03], 11 | [0.000000e+00, 0.000000e+00, -1.587671e-03, -1.587671e-03], 12 | [0.000000e+00, -1.832854e-03, 1.595944e-03, -2.398126e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_13.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 2.600365e+01, 3 | "bioEndTime" : 3.601607e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1524, 1698, 1756], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.951804e-03, 0.000000e+00, 1.951804e-03], 11 | [0.000000e+00, 0.000000e+00, -1.532850e-03, -1.532850e-03], 12 | [0.000000e+00, -1.966238e-03, 1.541748e-03, -4.275046e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_14.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 2.800402e+01, 3 | "bioEndTime" : 3.800753e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1350, 1700, 1585], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.156140e-03, 0.000000e+00, 2.156140e-03], 11 | [0.000000e+00, 0.000000e+00, -1.543950e-03, -1.543950e-03], 12 | [0.000000e+00, -2.132066e-03, 1.528995e-03, -6.063474e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_15.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 3.000457e+01, 3 | "bioEndTime" : 4.000015e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1242, 1563, 1368], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.344822e-03, 0.000000e+00, 2.344822e-03], 11 | [0.000000e+00, 0.000000e+00, -1.626647e-03, -1.626647e-03], 12 | [0.000000e+00, -2.305507e-03, 1.606760e-03, -7.024741e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_16.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 3.200062e+01, 3 | "bioEndTime" : 4.200380e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1286, 1447, 1223], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.368660e-03, 0.000000e+00, 2.368660e-03], 11 | [0.000000e+00, 0.000000e+00, -1.739217e-03, -1.739217e-03], 12 | [0.000000e+00, -2.380528e-03, 1.741919e-03, -6.427326e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_17.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 3.400183e+01, 3 | "bioEndTime" : 4.400231e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1384, 1311, 1169], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.201707e-03, 0.000000e+00, 2.201707e-03], 11 | [0.000000e+00, 0.000000e+00, -1.875737e-03, -1.875737e-03], 12 | [0.000000e+00, -2.239743e-03, 1.902647e-03, -3.412958e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_18.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 3.601607e+01, 3 | "bioEndTime" : 4.600244e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1547, 1243, 1259], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.982035e-03, 0.000000e+00, 1.982035e-03], 11 | [0.000000e+00, 0.000000e+00, -1.934123e-03, -1.934123e-03], 12 | [0.000000e+00, -1.975487e-03, 1.933959e-03, -4.535767e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_19.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 3.800753e+01, 3 | "bioEndTime" : 4.800135e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1756, 1277, 1473], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.784389e-03, 0.000000e+00, 1.784389e-03], 11 | [0.000000e+00, 0.000000e+00, -1.873213e-03, -1.873213e-03], 12 | [0.000000e+00, -1.750318e-03, 1.849886e-03, 9.627372e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_2.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 4.000134e+00, 3 | "bioEndTime" : 1.400261e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1419, 1640, 1549], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.152168e-03, 0.000000e+00, 2.152168e-03], 11 | [0.000000e+00, 0.000000e+00, -1.501318e-03, -1.501318e-03], 12 | [0.000000e+00, -2.131916e-03, 1.495114e-03, -6.399999e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_20.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 4.000015e+01, 3 | "bioEndTime" : 5.000054e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1855, 1446, 1738], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.677507e-03, 0.000000e+00, 1.677507e-03], 11 | [0.000000e+00, 0.000000e+00, -1.690511e-03, -1.690511e-03], 12 | [0.000000e+00, -1.653486e-03, 1.688160e-03, 3.185106e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_21.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 4.200380e+01, 3 | "bioEndTime" : 5.200159e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1852, 1608, 1898], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.657892e-03, 0.000000e+00, 1.657892e-03], 11 | [0.000000e+00, 0.000000e+00, -1.533079e-03, -1.533079e-03], 12 | [0.000000e+00, -1.663174e-03, 1.554744e-03, -1.110018e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_22.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 4.400231e+01, 3 | "bioEndTime" : 5.400149e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1716, 1751, 1937], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.733826e-03, 0.000000e+00, 1.733826e-03], 11 | [0.000000e+00, 0.000000e+00, -1.427730e-03, -1.427730e-03], 12 | [0.000000e+00, -1.758771e-03, 1.449201e-03, -3.120938e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_23.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 4.600244e+01, 3 | "bioEndTime" : 5.600769e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1569, 1843, 1848], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.904484e-03, 0.000000e+00, 1.904484e-03], 11 | [0.000000e+00, 0.000000e+00, -1.392139e-03, -1.392139e-03], 12 | [0.000000e+00, -1.910771e-03, 1.394649e-03, -5.187806e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_24.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 4.800135e+01, 3 | "bioEndTime" : 5.800046e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1387, 1811, 1647], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.153909e-03, 0.000000e+00, 2.153909e-03], 11 | [0.000000e+00, 0.000000e+00, -1.416522e-03, -1.416522e-03], 12 | [0.000000e+00, -2.108344e-03, 1.397862e-03, -7.134686e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_25.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 5.000054e+01, 3 | "bioEndTime" : 6.000336e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1300, 1677, 1408], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.324884e-03, 0.000000e+00, 2.324884e-03], 11 | [0.000000e+00, 0.000000e+00, -1.523096e-03, -1.523096e-03], 12 | [0.000000e+00, -2.292632e-03, 1.506383e-03, -7.897368e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_26.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 5.200159e+01, 3 | "bioEndTime" : 6.200196e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1258, 1528, 1231], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.363114e-03, 0.000000e+00, 2.363114e-03], 11 | [0.000000e+00, 0.000000e+00, -1.670510e-03, -1.670510e-03], 12 | [0.000000e+00, -2.364797e-03, 1.673492e-03, -6.952437e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_27.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 5.400149e+01, 3 | "bioEndTime" : 6.401032e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1352, 1390, 1135], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.235977e-03, 0.000000e+00, 2.235977e-03], 11 | [0.000000e+00, 0.000000e+00, -1.842331e-03, -1.842331e-03], 12 | [0.000000e+00, -2.278238e-03, 1.868810e-03, -4.136104e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_28.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 5.600769e+01, 3 | "bioEndTime" : 6.600021e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1511, 1284, 1198], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.986212e-03, 0.000000e+00, 1.986212e-03], 11 | [0.000000e+00, 0.000000e+00, -1.976854e-03, -1.976854e-03], 12 | [0.000000e+00, -1.999906e-03, 1.999957e-03, -3.907863e-06]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_29.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 5.800046e+01, 3 | "bioEndTime" : 6.800013e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1666, 1271, 1404], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.771231e-03, 0.000000e+00, 1.771231e-03], 11 | [0.000000e+00, 0.000000e+00, -1.970664e-03, -1.970664e-03], 12 | [0.000000e+00, -1.745649e-03, 1.945277e-03, 1.962039e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_3.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 6.000890e+00, 3 | "bioEndTime" : 1.600054e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1330, 1590, 1411], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.252815e-03, 0.000000e+00, 2.252815e-03], 11 | [0.000000e+00, 0.000000e+00, -1.563701e-03, -1.563701e-03], 12 | [0.000000e+00, -2.239598e-03, 1.564378e-03, -6.787316e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_30.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 6.000336e+01, 3 | "bioEndTime" : 7.000199e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1849, 1364, 1681], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.635766e-03, 0.000000e+00, 1.635766e-03], 11 | [0.000000e+00, 0.000000e+00, -1.808055e-03, -1.808055e-03], 12 | [0.000000e+00, -1.609488e-03, 1.766407e-03, 1.540396e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_31.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 6.200196e+01, 3 | "bioEndTime" : 7.200320e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1940, 1541, 1949], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.603103e-03, 0.000000e+00, 1.603103e-03], 11 | [0.000000e+00, 0.000000e+00, -1.597700e-03, -1.597700e-03], 12 | [0.000000e+00, -1.602302e-03, 1.590386e-03, -1.445345e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_32.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 6.401032e+01, 3 | "bioEndTime" : 7.400042e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1882, 1736, 2095], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.661853e-03, 0.000000e+00, 1.661853e-03], 11 | [0.000000e+00, 0.000000e+00, -1.411996e-03, -1.411996e-03], 12 | [0.000000e+00, -1.691059e-03, 1.449180e-03, -2.442751e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_33.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 6.600021e+01, 3 | "bioEndTime" : 7.600934e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1694, 1875, 2065], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.847240e-03, 0.000000e+00, 1.847240e-03], 11 | [0.000000e+00, 0.000000e+00, -1.307160e-03, -1.307160e-03], 12 | [0.000000e+00, -1.882373e-03, 1.334115e-03, -5.507279e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_34.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 6.800013e+01, 3 | "bioEndTime" : 7.800384e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1486, 1929, 1861], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.134670e-03, 0.000000e+00, 2.134670e-03], 11 | [0.000000e+00, 0.000000e+00, -1.283748e-03, -1.283748e-03], 12 | [0.000000e+00, -2.139846e-03, 1.274829e-03, -8.677730e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_35.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 7.000199e+01, 3 | "bioEndTime" : 8.000213e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1211, 1848, 1513], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.505807e-03, 0.000000e+00, 2.505807e-03], 11 | [0.000000e+00, 0.000000e+00, -1.365165e-03, -1.365165e-03], 12 | [0.000000e+00, -2.438093e-03, 1.315590e-03, -1.125809e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_36.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 7.200320e+01, 3 | "bioEndTime" : 8.200359e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1057, 1657, 1186], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.835131e-03, 0.000000e+00, 2.835131e-03], 11 | [0.000000e+00, 0.000000e+00, -1.529537e-03, -1.529537e-03], 12 | [0.000000e+00, -2.771926e-03, 1.482594e-03, -1.293544e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_37.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 7.400042e+01, 3 | "bioEndTime" : 8.400012e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 989, 1424, 969], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.969236e-03, 0.000000e+00, 2.969236e-03], 11 | [0.000000e+00, 0.000000e+00, -1.785985e-03, -1.785985e-03], 12 | [0.000000e+00, -2.972011e-03, 1.785612e-03, -1.191679e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_38.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 7.600934e+01, 3 | "bioEndTime" : 8.600139e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1049, 1207, 847], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.791146e-03, 0.000000e+00, 2.791146e-03], 11 | [0.000000e+00, 0.000000e+00, -2.081006e-03, -2.081006e-03], 12 | [0.000000e+00, -2.874120e-03, 2.172060e-03, -7.081072e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_39.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 7.800384e+01, 3 | "bioEndTime" : 8.800564e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1253, 1066, 879], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.364896e-03, 0.000000e+00, 2.364896e-03], 11 | [0.000000e+00, 0.000000e+00, -2.369906e-03, -2.369906e-03], 12 | [0.000000e+00, -2.434375e-03, 2.457440e-03, 1.721825e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_4.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 8.001158e+00, 3 | "bioEndTime" : 1.800241e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1327, 1493, 1302], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.278364e-03, 0.000000e+00, 2.278364e-03], 11 | [0.000000e+00, 0.000000e+00, -1.658002e-03, -1.658002e-03], 12 | [0.000000e+00, -2.275167e-03, 1.665118e-03, -6.138333e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_40.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 8.000213e+01, 3 | "bioEndTime" : 9.000465e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1517, 1037, 1080], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.991946e-03, 0.000000e+00, 1.991946e-03], 11 | [0.000000e+00, 0.000000e+00, -2.455684e-03, -2.455684e-03], 12 | [0.000000e+00, -1.997164e-03, 2.444416e-03, 4.423360e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_41.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 8.200359e+01, 3 | "bioEndTime" : 9.200065e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1758, 1100, 1391], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.707374e-03, 0.000000e+00, 1.707374e-03], 11 | [0.000000e+00, 0.000000e+00, -2.298449e-03, -2.298449e-03], 12 | [0.000000e+00, -1.658030e-03, 2.216081e-03, 5.542297e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_42.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 8.400012e+01, 3 | "bioEndTime" : 9.400033e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1912, 1284, 1765], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.568910e-03, 0.000000e+00, 1.568910e-03], 11 | [0.000000e+00, 0.000000e+00, -1.940337e-03, -1.940337e-03], 12 | [0.000000e+00, -1.529375e-03, 1.895720e-03, 3.633709e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_43.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 8.600139e+01, 3 | "bioEndTime" : 9.600291e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1902, 1526, 2020], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.567840e-03, 0.000000e+00, 1.567840e-03], 11 | [0.000000e+00, 0.000000e+00, -1.636631e-03, -1.636631e-03], 12 | [0.000000e+00, -1.599753e-03, 1.657323e-03, 5.498327e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_44.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 8.800564e+01, 3 | "bioEndTime" : 9.800126e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1709, 1713, 2054], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.680704e-03, 0.000000e+00, 1.680704e-03], 11 | [0.000000e+00, 0.000000e+00, -1.429302e-03, -1.429302e-03], 12 | [0.000000e+00, -1.747682e-03, 1.486097e-03, -2.640684e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_45.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 9.000465e+01, 3 | "bioEndTime" : 1.000002e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1482, 1813, 1943], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.976896e-03, 0.000000e+00, 1.976896e-03], 11 | [0.000000e+00, 0.000000e+00, -1.326795e-03, -1.326795e-03], 12 | [0.000000e+00, -1.986185e-03, 1.355449e-03, -6.333738e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_46.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 9.200065e+01, 3 | "bioEndTime" : 1.020000e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1242, 1821, 1649], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.424665e-03, 0.000000e+00, 2.424665e-03], 11 | [0.000000e+00, 0.000000e+00, -1.329720e-03, -1.329720e-03], 12 | [0.000000e+00, -2.309187e-03, 1.296399e-03, -1.015845e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_47.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 9.400033e+01, 3 | "bioEndTime" : 1.040094e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1065, 1677, 1273], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.817391e-03, 0.000000e+00, 2.817391e-03], 11 | [0.000000e+00, 0.000000e+00, -1.463816e-03, -1.463816e-03], 12 | [0.000000e+00, -2.703364e-03, 1.416665e-03, -1.290616e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_48.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 9.600291e+01, 3 | "bioEndTime" : 1.060006e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1000, 1471, 977], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.938371e-03, 0.000000e+00, 2.938371e-03], 11 | [0.000000e+00, 0.000000e+00, -1.696691e-03, -1.696691e-03], 12 | [0.000000e+00, -2.942442e-03, 1.693568e-03, -1.253811e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_49.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 9.800126e+01, 3 | "bioEndTime" : 1.080068e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1141, 1261, 892], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.681320e-03, 0.000000e+00, 2.681320e-03], 11 | [0.000000e+00, 0.000000e+00, -1.986341e-03, -1.986341e-03], 12 | [0.000000e+00, -2.783341e-03, 2.062569e-03, -7.262669e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_5.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.000042e+01, 3 | "bioEndTime" : 2.000066e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1339, 1430, 1282], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.242048e-03, 0.000000e+00, 2.242048e-03], 11 | [0.000000e+00, 0.000000e+00, -1.749229e-03, -1.749229e-03], 12 | [0.000000e+00, -2.239068e-03, 1.759073e-03, -4.839231e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_50.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.000002e+02, 3 | "bioEndTime" : 1.100038e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1320, 1119, 924], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.279676e-03, 0.000000e+00, 2.279676e-03], 11 | [0.000000e+00, 0.000000e+00, -2.229338e-03, -2.229338e-03], 12 | [0.000000e+00, -2.332773e-03, 2.316769e-03, -2.124255e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_51.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.020000e+02, 3 | "bioEndTime" : 1.120004e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1541, 1088, 1144], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.911495e-03, 0.000000e+00, 1.911495e-03], 11 | [0.000000e+00, 0.000000e+00, -2.310606e-03, -2.310606e-03], 12 | [0.000000e+00, -1.878411e-03, 2.292481e-03, 4.097140e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_52.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.040094e+02, 3 | "bioEndTime" : 1.140004e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1772, 1186, 1440], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.678989e-03, 0.000000e+00, 1.678989e-03], 11 | [0.000000e+00, 0.000000e+00, -2.128096e-03, -2.128096e-03], 12 | [0.000000e+00, -1.614563e-03, 2.075116e-03, 4.570937e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_53.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.060006e+02, 3 | "bioEndTime" : 1.160010e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1980, 1352, 1816], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.555690e-03, 0.000000e+00, 1.555690e-03], 11 | [0.000000e+00, 0.000000e+00, -1.850229e-03, -1.850229e-03], 12 | [0.000000e+00, -1.515755e-03, 1.826531e-03, 3.079581e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_54.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.080068e+02, 3 | "bioEndTime" : 1.180003e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1937, 1630, 2045], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.541834e-03, 0.000000e+00, 1.541834e-03], 11 | [0.000000e+00, 0.000000e+00, -1.572599e-03, -1.572599e-03], 12 | [0.000000e+00, -1.559951e-03, 1.612228e-03, 4.979708e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_55.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.100038e+02, 3 | "bioEndTime" : 1.200009e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1800, 1811, 2092], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.634355e-03, 0.000000e+00, 1.634355e-03], 11 | [0.000000e+00, 0.000000e+00, -1.423886e-03, -1.423886e-03], 12 | [0.000000e+00, -1.665098e-03, 1.466160e-03, -2.013224e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_56.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.120004e+02, 3 | "bioEndTime" : 1.220049e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1610, 1894, 1978], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.825742e-03, 0.000000e+00, 1.825742e-03], 11 | [0.000000e+00, 0.000000e+00, -1.350340e-03, -1.350340e-03], 12 | [0.000000e+00, -1.840288e-03, 1.363865e-03, -4.789152e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_57.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.140004e+02, 3 | "bioEndTime" : 1.240018e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1371, 1862, 1736], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.124297e-03, 0.000000e+00, 2.124297e-03], 11 | [0.000000e+00, 0.000000e+00, -1.358651e-03, -1.358651e-03], 12 | [0.000000e+00, -2.099752e-03, 1.343214e-03, -7.594055e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_58.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.160010e+02, 3 | "bioEndTime" : 1.260007e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1146, 1754, 1378], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.468936e-03, 0.000000e+00, 2.468936e-03], 11 | [0.000000e+00, 0.000000e+00, -1.454533e-03, -1.454533e-03], 12 | [0.000000e+00, -2.407068e-03, 1.420313e-03, -9.902585e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_59.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.180003e+02, 3 | "bioEndTime" : 1.280127e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1116, 1534, 1156], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.626338e-03, 0.000000e+00, 2.626338e-03], 11 | [0.000000e+00, 0.000000e+00, -1.651498e-03, -1.651498e-03], 12 | [0.000000e+00, -2.606299e-03, 1.643454e-03, -9.671633e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_6.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.200038e+01, 3 | "bioEndTime" : 2.200538e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1359, 1351, 1260], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.171173e-03, 0.000000e+00, 2.171173e-03], 11 | [0.000000e+00, 0.000000e+00, -1.826838e-03, -1.826838e-03], 12 | [0.000000e+00, -2.167428e-03, 1.835171e-03, -3.362243e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_60.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.200009e+02, 3 | "bioEndTime" : 1.300027e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1148, 1362, 1040], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.579200e-03, 0.000000e+00, 2.579200e-03], 11 | [0.000000e+00, 0.000000e+00, -1.868999e-03, -1.868999e-03], 12 | [0.000000e+00, -2.610544e-03, 1.894586e-03, -7.208374e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_61.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.220049e+02, 3 | "bioEndTime" : 1.320035e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1232, 1237, 1029], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.413078e-03, 0.000000e+00, 2.413078e-03], 11 | [0.000000e+00, 0.000000e+00, -2.063317e-03, -2.063317e-03], 12 | [0.000000e+00, -2.445917e-03, 2.116044e-03, -3.349371e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_62.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.240018e+02, 3 | "bioEndTime" : 1.340001e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1452, 1163, 1092], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.117593e-03, 0.000000e+00, 2.117593e-03], 11 | [0.000000e+00, 0.000000e+00, -2.180352e-03, -2.180352e-03], 12 | [0.000000e+00, -2.139060e-03, 2.204135e-03, 6.037881e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_63.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.260007e+02, 3 | "bioEndTime" : 1.360023e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1691, 1168, 1316], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.841752e-03, 0.000000e+00, 1.841752e-03], 11 | [0.000000e+00, 0.000000e+00, -2.157597e-03, -2.157597e-03], 12 | [0.000000e+00, -1.822309e-03, 2.131302e-03, 3.050384e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_64.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.280127e+02, 3 | "bioEndTime" : 1.380004e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1888, 1285, 1579], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.622203e-03, 0.000000e+00, 1.622203e-03], 11 | [0.000000e+00, 0.000000e+00, -1.959454e-03, -1.959454e-03], 12 | [0.000000e+00, -1.591294e-03, 1.931743e-03, 3.372823e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_65.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.300027e+02, 3 | "bioEndTime" : 1.400022e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 2065, 1471, 1953], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.509614e-03, 0.000000e+00, 1.509614e-03], 11 | [0.000000e+00, 0.000000e+00, -1.709653e-03, -1.709653e-03], 12 | [0.000000e+00, -1.491994e-03, 1.688371e-03, 1.938051e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_66.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.320035e+02, 3 | "bioEndTime" : 1.420012e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 2064, 1708, 2161], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.507878e-03, 0.000000e+00, 1.507878e-03], 11 | [0.000000e+00, 0.000000e+00, -1.469552e-03, -1.469552e-03], 12 | [0.000000e+00, -1.525744e-03, 1.485855e-03, -4.213104e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_67.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.340001e+02, 3 | "bioEndTime" : 1.440016e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1878, 1881, 2228], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.611280e-03, 0.000000e+00, 1.611280e-03], 11 | [0.000000e+00, 0.000000e+00, -1.321386e-03, -1.321386e-03], 12 | [0.000000e+00, -1.671158e-03, 1.356113e-03, -3.172389e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_68.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.360023e+02, 3 | "bioEndTime" : 1.460049e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1617, 1985, 2090], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.870301e-03, 0.000000e+00, 1.870301e-03], 11 | [0.000000e+00, 0.000000e+00, -1.241622e-03, -1.241622e-03], 12 | [0.000000e+00, -1.934562e-03, 1.257012e-03, -6.799416e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_69.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.380004e+02, 3 | "bioEndTime" : 1.480029e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1309, 1938, 1806], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.306167e-03, 0.000000e+00, 2.306167e-03], 11 | [0.000000e+00, 0.000000e+00, -1.242503e-03, -1.242503e-03], 12 | [0.000000e+00, -2.290616e-03, 1.222429e-03, -1.071046e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_7.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.400261e+01, 3 | "bioEndTime" : 2.400294e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1393, 1293, 1267], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.067906e-03, 0.000000e+00, 2.067906e-03], 11 | [0.000000e+00, 0.000000e+00, -1.874229e-03, -1.874229e-03], 12 | [0.000000e+00, -2.073032e-03, 1.878934e-03, -1.979867e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_70.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.400022e+02, 3 | "bioEndTime" : 1.500011e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1038, 1792, 1357], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.960449e-03, 0.000000e+00, 2.960449e-03], 11 | [0.000000e+00, 0.000000e+00, -1.333659e-03, -1.333659e-03], 12 | [0.000000e+00, -2.787867e-03, 1.270415e-03, -1.521168e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_71.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.420012e+02, 3 | "bioEndTime" : 1.520021e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 947, 1547, 1034], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 3.314125e-03, 0.000000e+00, 3.314125e-03], 11 | [0.000000e+00, 0.000000e+00, -1.553281e-03, -1.553281e-03], 12 | [0.000000e+00, -3.225511e-03, 1.515158e-03, -1.715316e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_72.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.440016e+02, 3 | "bioEndTime" : 1.540032e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 986, 1333, 843], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 3.213246e-03, 0.000000e+00, 3.213246e-03], 11 | [0.000000e+00, 0.000000e+00, -1.855577e-03, -1.855577e-03], 12 | [0.000000e+00, -3.332877e-03, 1.902545e-03, -1.436410e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_73.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.460049e+02, 3 | "bioEndTime" : 1.560039e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1127, 1134, 793], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.796312e-03, 0.000000e+00, 2.796312e-03], 11 | [0.000000e+00, 0.000000e+00, -2.188324e-03, -2.188324e-03], 12 | [0.000000e+00, -2.932250e-03, 2.315334e-03, -6.232863e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_74.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.480029e+02, 3 | "bioEndTime" : 1.580050e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1349, 1024, 899], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.311162e-03, 0.000000e+00, 2.311162e-03], 11 | [0.000000e+00, 0.000000e+00, -2.422653e-03, -2.422653e-03], 12 | [0.000000e+00, -2.279861e-03, 2.499200e-03, 2.137639e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_75.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.500011e+02, 3 | "bioEndTime" : 1.600013e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1582, 1028, 1155], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.895206e-03, 0.000000e+00, 1.895206e-03], 11 | [0.000000e+00, 0.000000e+00, -2.418356e-03, -2.418356e-03], 12 | [0.000000e+00, -1.828393e-03, 2.370275e-03, 5.374484e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_76.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.520021e+02, 3 | "bioEndTime" : 1.620003e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1809, 1111, 1509], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.644784e-03, 0.000000e+00, 1.644784e-03], 11 | [0.000000e+00, 0.000000e+00, -2.162854e-03, -2.162854e-03], 12 | [0.000000e+00, -1.580839e-03, 2.062596e-03, 4.783796e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_77.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.540032e+02, 3 | "bioEndTime" : 1.640006e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1959, 1317, 1895], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.544238e-03, 0.000000e+00, 1.544238e-03], 11 | [0.000000e+00, 0.000000e+00, -1.775771e-03, -1.775771e-03], 12 | [0.000000e+00, -1.528679e-03, 1.750663e-03, 2.192827e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_78.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.560039e+02, 3 | "bioEndTime" : 1.660024e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1906, 1581, 2130], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.569816e-03, 0.000000e+00, 1.569816e-03], 11 | [0.000000e+00, 0.000000e+00, -1.473951e-03, -1.473951e-03], 12 | [0.000000e+00, -1.622579e-03, 1.521815e-03, -1.031654e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_79.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.580050e+02, 3 | "bioEndTime" : 1.680100e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1728, 1797, 2126], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.743381e-03, 0.000000e+00, 1.743381e-03], 11 | [0.000000e+00, 0.000000e+00, -1.304352e-03, -1.304352e-03], 12 | [0.000000e+00, -1.820190e-03, 1.357584e-03, -4.649854e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_8.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.600054e+01, 3 | "bioEndTime" : 2.600365e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1480, 1310, 1311], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.956750e-03, 0.000000e+00, 1.956750e-03], 11 | [0.000000e+00, 0.000000e+00, -1.887915e-03, -1.887915e-03], 12 | [0.000000e+00, -1.954522e-03, 1.891437e-03, -6.678263e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_80.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.600013e+02, 3 | "bioEndTime" : 1.700015e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1464, 1911, 1948], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.066753e-03, 0.000000e+00, 2.066753e-03], 11 | [0.000000e+00, 0.000000e+00, -1.241065e-03, -1.241065e-03], 12 | [0.000000e+00, -2.108587e-03, 1.250593e-03, -8.606210e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_81.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.620003e+02, 3 | "bioEndTime" : 1.720050e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1139, 1900, 1591], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.570140e-03, 0.000000e+00, 2.570140e-03], 11 | [0.000000e+00, 0.000000e+00, -1.293022e-03, -1.293022e-03], 12 | [0.000000e+00, -2.525959e-03, 1.233087e-03, -1.296142e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_82.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.640006e+02, 3 | "bioEndTime" : 1.740223e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 901, 1717, 1169], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 3.276989e-03, 0.000000e+00, 3.276989e-03], 11 | [0.000000e+00, 0.000000e+00, -1.455071e-03, -1.455071e-03], 12 | [0.000000e+00, -3.087589e-03, 1.377447e-03, -1.714657e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_83.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.660024e+02, 3 | "bioEndTime" : 1.760003e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 841, 1447, 850], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 3.604676e-03, 0.000000e+00, 3.604676e-03], 11 | [0.000000e+00, 0.000000e+00, -1.735476e-03, -1.735476e-03], 12 | [0.000000e+00, -3.582032e-03, 1.729861e-03, -1.858425e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_84.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.680100e+02, 3 | "bioEndTime" : 1.780082e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 961, 1202, 707], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 3.273049e-03, 0.000000e+00, 3.273049e-03], 11 | [0.000000e+00, 0.000000e+00, -2.132261e-03, -2.132261e-03], 12 | [0.000000e+00, -3.544859e-03, 2.238867e-03, -1.313512e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_85.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.700015e+02, 3 | "bioEndTime" : 1.800000e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1185, 976, 720], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.663913e-03, 0.000000e+00, 2.663913e-03], 11 | [0.000000e+00, 0.000000e+00, -2.529181e-03, -2.529181e-03], 12 | [0.000000e+00, -2.895118e-03, 2.698677e-03, -2.037725e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_86.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.720050e+02, 3 | "bioEndTime" : 1.820023e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1490, 888, 873], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.134379e-03, 0.000000e+00, 2.134379e-03], 11 | [0.000000e+00, 0.000000e+00, -2.751354e-03, -2.751354e-03], 12 | [0.000000e+00, -2.123910e-03, 2.769998e-03, 6.402173e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_87.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.740223e+02, 3 | "bioEndTime" : 1.840003e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1788, 972, 1254], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.712435e-03, 0.000000e+00, 1.712435e-03], 11 | [0.000000e+00, 0.000000e+00, -2.536796e-03, -2.536796e-03], 12 | [0.000000e+00, -1.590522e-03, 2.413798e-03, 8.192086e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_88.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.760003e+02, 3 | "bioEndTime" : 1.860010e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 2043, 1189, 1694], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.481275e-03, 0.000000e+00, 1.481275e-03], 11 | [0.000000e+00, 0.000000e+00, -2.097051e-03, -2.097051e-03], 12 | [0.000000e+00, -1.387933e-03, 2.030513e-03, 6.396178e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_89.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.780082e+02, 3 | "bioEndTime" : 1.880006e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 2119, 1462, 2091], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.381891e-03, 0.000000e+00, 1.381891e-03], 11 | [0.000000e+00, 0.000000e+00, -1.677289e-03, -1.677289e-03], 12 | [0.000000e+00, -1.374448e-03, 1.721567e-03, 3.447489e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_9.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.800241e+01, 3 | "bioEndTime" : 2.800402e+01, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1590, 1345, 1442], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.830071e-03, 0.000000e+00, 1.830071e-03], 11 | [0.000000e+00, 0.000000e+00, -1.855591e-03, -1.855591e-03], 12 | [0.000000e+00, -1.825563e-03, 1.852086e-03, 2.312925e-05]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_90.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.800000e+02, 3 | "bioEndTime" : 1.900020e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 2041, 1830, 2320], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.436701e-03, 0.000000e+00, 1.436701e-03], 11 | [0.000000e+00, 0.000000e+00, -1.414810e-03, -1.414810e-03], 12 | [0.000000e+00, -1.476993e-03, 1.484974e-03, 5.867519e-06]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_91.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.820023e+02, 3 | "bioEndTime" : 1.920002e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1853, 2038, 2358], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.617372e-03, 0.000000e+00, 1.617372e-03], 11 | [0.000000e+00, 0.000000e+00, -1.268497e-03, -1.268497e-03], 12 | [0.000000e+00, -1.656712e-03, 1.320425e-03, -3.384004e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_92.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.840003e+02, 3 | "bioEndTime" : 1.940045e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1595, 2093, 2090], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 1.932042e-03, 0.000000e+00, 1.932042e-03], 11 | [0.000000e+00, 0.000000e+00, -1.218076e-03, -1.218076e-03], 12 | [0.000000e+00, -1.917255e-03, 1.219157e-03, -7.004416e-04]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_93.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.860010e+02, 3 | "bioEndTime" : 1.960005e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1364, 1981, 1738], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.324351e-03, 0.000000e+00, 2.324351e-03], 11 | [0.000000e+00, 0.000000e+00, -1.249883e-03, -1.249883e-03], 12 | [0.000000e+00, -2.246099e-03, 1.226717e-03, -1.022219e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_94.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.880006e+02, 3 | "bioEndTime" : 1.980034e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1197, 1808, 1380], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.658476e-03, 0.000000e+00, 2.658476e-03], 11 | [0.000000e+00, 0.000000e+00, -1.369402e-03, -1.369402e-03], 12 | [0.000000e+00, -2.578773e-03, 1.345509e-03, -1.236814e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/flux_95.json: -------------------------------------------------------------------------------- 1 | { 2 | "bioBeginTime" : 1.900020e+02, 3 | "bioEndTime" : 2.000026e+02, 4 | "normalized" : true, 5 | "uuid" : "575439247", 6 | "rules" : ["Perturbations", "reproduce", "die", "eat"], 7 | "hits" : [0, 1149, 1511, 1128], 8 | "fluxs" : 9 | [[0.000000e+00, 0.000000e+00, 0.000000e+00, 0.000000e+00], 10 | [0.000000e+00, 2.760329e-03, 0.000000e+00, 2.760329e-03], 11 | [0.000000e+00, 0.000000e+00, -1.565880e-03, -1.565880e-03], 12 | [0.000000e+00, -2.761771e-03, 1.573862e-03, -1.192233e-03]] 13 | } -------------------------------------------------------------------------------- /data/PreyPred/inputs.ka: -------------------------------------------------------------------------------- 1 | # "uuid" : "575439247" 2 | %def: "seed" "774677984" 3 | %def: "newSyntax" "true" 4 | %def: "dumpIfDeadlocked" "true" 5 | %def: "maxConsecutiveClash" "2" 6 | %def: "plotPeriod" "1" "t.u." 7 | %def: "outputFileName" "data.csv" 8 | 9 | %agent: prey() 10 | %agent: predator() 11 | 12 | %var:/*0*/ 'DIM_beat' 2 13 | %var:/*1*/ 'DIM_length' 5 14 | %var:/*2*/ 'DIM_tick' 0 15 | %var:/*3*/ 'DIM_clock' 0 16 | %plot: [T] 17 | %plot: |predator()| 18 | %plot: |prey()| 19 | 20 | 'reproduce' prey(), +prey() @ 0.3 21 | 'die' -predator() @ 0.25 22 | 'eat' -prey(), predator(), +predator() @ 0.0005 23 | 24 | /*0*/%mod: repeat (([T] > DIM_clock) && (DIM_tick > (DIM_length - 1))) do $FLUX "flux_".(DIM_tick - DIM_length).".json" [false] until [false] 25 | /*1*/%mod: repeat ([T] > DIM_clock) do $FLUX "flux_".DIM_tick.".json" [true] until ((((DIM_tick + DIM_length) + 1) * DIM_beat) > [Tmax]) 26 | /*2*/%mod: repeat ([T] > DIM_clock) do $UPDATE DIM_clock (DIM_clock + DIM_beat); $UPDATE DIM_tick (DIM_tick + 1) until [false] 27 | 28 | %init: 580 prey() 29 | %init: 520 predator() 30 | 31 | %mod: [E] = 89842 do $STOP 32 | -------------------------------------------------------------------------------- /data/flux_4.json: -------------------------------------------------------------------------------- 1 | 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-------------------------------------------------------------------------------- /data/miniKaiProb3.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/data/miniKaiProb3.zip -------------------------------------------------------------------------------- /index.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | Dynamic Influence Networks 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 |
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Dataset

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49 | 50 |
51 | Examples:
52 | EGFR Simulation
53 | Predator Prey (Simple)
54 | Kai C (Complex) 55 |
56 | 57 | 58 |

Clustering

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Threshold
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Mode
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77 | Time +/- 78 | 79 |
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Appearance

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Layout

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Legend

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140 | Num. hits 141 |
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147 | Amt. influence 148 |
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Links
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1x

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193 | DYNAMIC INFLUENCE NETWORKS, a visual analytics tool for representing protein interaction networks, based on KaSim, an open source stochastic simulator of rule-based models. 194 |

195 |

196 | LEFT: A network layout of KaSim data. Rules are represented as circles; influences on other rules are represented with lines. 197 |

198 |

199 | If the magnitude of influence of one rule on another is higher than a user-given threshold (defined by the influence slider), they are clustered together (represented by colored circles). 200 |

201 |

202 | Click and drag a rule or cluster to pin it in place; click again to unpin it. Use the LAYOUT tab to pin nodes in place or to manually mark nodes into different clusters. 203 |

204 |

205 | RIGHT, TOP: A phenotype graph representing the overall activity of the network over the entire time window. 206 |

207 |

208 | RIGHT, MIDDLE AND BOTTOM: Right-click any rule in the network layout to display its fluxes over time as a line graph. 209 |

210 |

211 | DATASET: Drag and drop a zipped folder of json files generated by KaSim onto the page. They must be named in consecutive order: e.g., flux_0.json, flux_1.json, flux_2.json. 212 |

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224 | Tip: select a rule with right-click to bring up more in-depth information over time 225 |
226 |
227 | 228 | 229 | -------------------------------------------------------------------------------- /lib/README: -------------------------------------------------------------------------------- 1 | zip.js is an open-source library (BSD license) for zipping and unzipping files. 2 | 3 | See here for more info: 4 | http://gildas-lormeau.github.com/zip.js/ 5 | -------------------------------------------------------------------------------- /lib/WebContent/.jshintrc: -------------------------------------------------------------------------------- 1 | { 2 | "browser": true, 3 | "laxbreak": true, 4 | "undef": true, 5 | "globals": { 6 | "console": false, 7 | "escape": false, 8 | "unescape": false, 9 | "zip": false 10 | } 11 | } 12 | -------------------------------------------------------------------------------- /lib/WebContent/pako/codecs.js: -------------------------------------------------------------------------------- 1 | /// wrapper for pako (https://github.com/nodeca/pako) 2 | 3 | /* globals pako */ 4 | (function(global) { 5 | "use strict"; 6 | 7 | function Codec(isDeflater, options) { 8 | var newOptions = { raw: true, chunkSize: 1024 * 1024 }; 9 | if (options && typeof options.level === 'number') 10 | newOptions.level = options.level; 11 | this._backEnd = isDeflater? 12 | new pako.Deflate(newOptions) : 13 | new pako.Inflate(newOptions); 14 | this._chunks = []; 15 | this._dataLength = 0; 16 | this._backEnd.onData = this._onData.bind(this); 17 | } 18 | Codec.prototype._onData = function _onData(chunk) { 19 | this._chunks.push(chunk); 20 | this._dataLength += chunk.length; 21 | }; 22 | Codec.prototype._fetchData = function _fetchData() { 23 | var be = this._backEnd; 24 | if (be.err !== 0) 25 | throw new Error(be.msg); 26 | var chunks = this._chunks; 27 | var data; 28 | if (chunks.length === 1) 29 | data = chunks[0]; 30 | else if (chunks.length > 1) { 31 | data = new Uint8Array(this._dataLength); 32 | for (var i = 0, n = chunks.length, off = 0; i < n; i++) { 33 | var chunk = chunks[i]; 34 | data.set(chunk, off); 35 | off += chunk.length; 36 | } 37 | } 38 | chunks.length = 0; 39 | this._dataLength = 0; 40 | return data; 41 | }; 42 | Codec.prototype.append = function append(bytes, onprogress) { 43 | this._backEnd.push(bytes, false); 44 | return this._fetchData(); 45 | }; 46 | Codec.prototype.flush = function flush() { 47 | this._backEnd.push(new Uint8Array(0), true); 48 | return this._fetchData(); 49 | }; 50 | 51 | function Deflater(options) { 52 | Codec.call(this, true, options); 53 | } 54 | Deflater.prototype = Object.create(Codec.prototype); 55 | function Inflater() { 56 | Codec.call(this, false); 57 | } 58 | Inflater.prototype = Object.create(Codec.prototype); 59 | 60 | // 'zip' may not be defined in z-worker and some tests 61 | var env = global.zip || global; 62 | env.Deflater = env._pako_Deflater = Deflater; 63 | env.Inflater = env._pako_Inflater = Inflater; 64 | })(this); -------------------------------------------------------------------------------- /lib/WebContent/z-worker.js: -------------------------------------------------------------------------------- 1 | /* jshint worker:true */ 2 | (function main(global) { 3 | "use strict"; 4 | 5 | if (global.zWorkerInitialized) 6 | throw new Error('z-worker.js should be run only once'); 7 | global.zWorkerInitialized = true; 8 | 9 | addEventListener("message", function(event) { 10 | var message = event.data, type = message.type, sn = message.sn; 11 | var handler = handlers[type]; 12 | if (handler) { 13 | try { 14 | handler(message); 15 | } catch (e) { 16 | onError(type, sn, e); 17 | } 18 | } 19 | //for debug 20 | //postMessage({type: 'echo', originalType: type, sn: sn}); 21 | }); 22 | 23 | var handlers = { 24 | importScripts: doImportScripts, 25 | newTask: newTask, 26 | append: processData, 27 | flush: processData, 28 | }; 29 | 30 | // deflater/inflater tasks indexed by serial numbers 31 | var tasks = {}; 32 | 33 | function doImportScripts(msg) { 34 | if (msg.scripts && msg.scripts.length > 0) 35 | importScripts.apply(undefined, msg.scripts); 36 | postMessage({type: 'importScripts'}); 37 | } 38 | 39 | function newTask(msg) { 40 | var CodecClass = global[msg.codecClass]; 41 | var sn = msg.sn; 42 | if (tasks[sn]) 43 | throw Error('duplicated sn'); 44 | tasks[sn] = { 45 | codec: new CodecClass(msg.options), 46 | crcInput: msg.crcType === 'input', 47 | crcOutput: msg.crcType === 'output', 48 | crc: new Crc32(), 49 | }; 50 | postMessage({type: 'newTask', sn: sn}); 51 | } 52 | 53 | // performance may not be supported 54 | var now = global.performance ? global.performance.now.bind(global.performance) : Date.now; 55 | 56 | function processData(msg) { 57 | var sn = msg.sn, type = msg.type, input = msg.data; 58 | var task = tasks[sn]; 59 | // allow creating codec on first append 60 | if (!task && msg.codecClass) { 61 | newTask(msg); 62 | task = tasks[sn]; 63 | } 64 | var isAppend = type === 'append'; 65 | var start = now(); 66 | var output; 67 | if (isAppend) { 68 | try { 69 | output = task.codec.append(input, function onprogress(loaded) { 70 | postMessage({type: 'progress', sn: sn, loaded: loaded}); 71 | }); 72 | } catch (e) { 73 | delete tasks[sn]; 74 | throw e; 75 | } 76 | } else { 77 | delete tasks[sn]; 78 | output = task.codec.flush(); 79 | } 80 | var codecTime = now() - start; 81 | 82 | start = now(); 83 | if (input && task.crcInput) 84 | task.crc.append(input); 85 | if (output && task.crcOutput) 86 | task.crc.append(output); 87 | var crcTime = now() - start; 88 | 89 | var rmsg = {type: type, sn: sn, codecTime: codecTime, crcTime: crcTime}; 90 | var transferables = []; 91 | if (output) { 92 | rmsg.data = output; 93 | transferables.push(output.buffer); 94 | } 95 | if (!isAppend && (task.crcInput || task.crcOutput)) 96 | rmsg.crc = task.crc.get(); 97 | 98 | // posting a message with transferables will fail on IE10 99 | try { 100 | postMessage(rmsg, transferables); 101 | } catch(ex) { 102 | postMessage(rmsg); // retry without transferables 103 | } 104 | } 105 | 106 | function onError(type, sn, e) { 107 | var msg = { 108 | type: type, 109 | sn: sn, 110 | error: formatError(e) 111 | }; 112 | postMessage(msg); 113 | } 114 | 115 | function formatError(e) { 116 | return { message: e.message, stack: e.stack }; 117 | } 118 | 119 | // Crc32 code copied from file zip.js 120 | function Crc32() { 121 | this.crc = -1; 122 | } 123 | Crc32.prototype.append = function append(data) { 124 | var crc = this.crc | 0, table = this.table; 125 | for (var offset = 0, len = data.length | 0; offset < len; offset++) 126 | crc = (crc >>> 8) ^ table[(crc ^ data[offset]) & 0xFF]; 127 | this.crc = crc; 128 | }; 129 | Crc32.prototype.get = function get() { 130 | return ~this.crc; 131 | }; 132 | Crc32.prototype.table = (function() { 133 | var i, j, t, table = []; // Uint32Array is actually slower than [] 134 | for (i = 0; i < 256; i++) { 135 | t = i; 136 | for (j = 0; j < 8; j++) 137 | if (t & 1) 138 | t = (t >>> 1) ^ 0xEDB88320; 139 | else 140 | t = t >>> 1; 141 | table[i] = t; 142 | } 143 | return table; 144 | })(); 145 | 146 | // "no-op" codec 147 | function NOOP() {} 148 | global.NOOP = NOOP; 149 | NOOP.prototype.append = function append(bytes, onprogress) { 150 | return bytes; 151 | }; 152 | NOOP.prototype.flush = function flush() {}; 153 | })(this); 154 | -------------------------------------------------------------------------------- /lib/WebContent/zip-ext.js: -------------------------------------------------------------------------------- 1 | /* 2 | Copyright (c) 2013 Gildas Lormeau. All rights reserved. 3 | 4 | Redistribution and use in source and binary forms, with or without 5 | modification, are permitted provided that the following conditions are met: 6 | 7 | 1. Redistributions of source code must retain the above copyright notice, 8 | this list of conditions and the following disclaimer. 9 | 10 | 2. Redistributions in binary form must reproduce the above copyright 11 | notice, this list of conditions and the following disclaimer in 12 | the documentation and/or other materials provided with the distribution. 13 | 14 | 3. The names of the authors may not be used to endorse or promote products 15 | derived from this software without specific prior written permission. 16 | 17 | THIS SOFTWARE IS PROVIDED ``AS IS'' AND ANY EXPRESSED OR IMPLIED WARRANTIES, 18 | INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND 19 | FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL JCRAFT, 20 | INC. OR ANY CONTRIBUTORS TO THIS SOFTWARE BE LIABLE FOR ANY DIRECT, INDIRECT, 21 | INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT 22 | LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, 23 | OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 24 | LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 25 | NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, 26 | EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 27 | */ 28 | 29 | (function() { 30 | "use strict"; 31 | 32 | var ERR_HTTP_RANGE = "HTTP Range not supported."; 33 | 34 | var Reader = zip.Reader; 35 | var Writer = zip.Writer; 36 | 37 | var ZipDirectoryEntry; 38 | 39 | var appendABViewSupported; 40 | try { 41 | appendABViewSupported = new Blob([ new DataView(new ArrayBuffer(0)) ]).size === 0; 42 | } catch (e) { 43 | } 44 | 45 | function HttpReader(url) { 46 | var that = this; 47 | 48 | function getData(callback, onerror) { 49 | var request; 50 | if (!that.data) { 51 | request = new XMLHttpRequest(); 52 | request.addEventListener("load", function() { 53 | if (!that.size) 54 | that.size = Number(request.getResponseHeader("Content-Length")); 55 | that.data = new Uint8Array(request.response); 56 | callback(); 57 | }, false); 58 | request.addEventListener("error", onerror, false); 59 | request.open("GET", url); 60 | request.responseType = "arraybuffer"; 61 | request.send(); 62 | } else 63 | callback(); 64 | } 65 | 66 | function init(callback, onerror) { 67 | var request = new XMLHttpRequest(); 68 | request.addEventListener("load", function() { 69 | that.size = Number(request.getResponseHeader("Content-Length")); 70 | callback(); 71 | }, false); 72 | request.addEventListener("error", onerror, false); 73 | request.open("HEAD", url); 74 | request.send(); 75 | } 76 | 77 | function readUint8Array(index, length, callback, onerror) { 78 | getData(function() { 79 | callback(new Uint8Array(that.data.subarray(index, index + length))); 80 | }, onerror); 81 | } 82 | 83 | that.size = 0; 84 | that.init = init; 85 | that.readUint8Array = readUint8Array; 86 | } 87 | HttpReader.prototype = new Reader(); 88 | HttpReader.prototype.constructor = HttpReader; 89 | 90 | function HttpRangeReader(url) { 91 | var that = this; 92 | 93 | function init(callback, onerror) { 94 | var request = new XMLHttpRequest(); 95 | request.addEventListener("load", function() { 96 | that.size = Number(request.getResponseHeader("Content-Length")); 97 | if (request.getResponseHeader("Accept-Ranges") == "bytes") 98 | callback(); 99 | else 100 | onerror(ERR_HTTP_RANGE); 101 | }, false); 102 | request.addEventListener("error", onerror, false); 103 | request.open("HEAD", url); 104 | request.send(); 105 | } 106 | 107 | function readArrayBuffer(index, length, callback, onerror) { 108 | var request = new XMLHttpRequest(); 109 | request.open("GET", url); 110 | request.responseType = "arraybuffer"; 111 | request.setRequestHeader("Range", "bytes=" + index + "-" + (index + length - 1)); 112 | request.addEventListener("load", function() { 113 | callback(request.response); 114 | }, false); 115 | request.addEventListener("error", onerror, false); 116 | request.send(); 117 | } 118 | 119 | function readUint8Array(index, length, callback, onerror) { 120 | readArrayBuffer(index, length, function(arraybuffer) { 121 | callback(new Uint8Array(arraybuffer)); 122 | }, onerror); 123 | } 124 | 125 | that.size = 0; 126 | that.init = init; 127 | that.readUint8Array = readUint8Array; 128 | } 129 | HttpRangeReader.prototype = new Reader(); 130 | HttpRangeReader.prototype.constructor = HttpRangeReader; 131 | 132 | function ArrayBufferReader(arrayBuffer) { 133 | var that = this; 134 | 135 | function init(callback, onerror) { 136 | that.size = arrayBuffer.byteLength; 137 | callback(); 138 | } 139 | 140 | function readUint8Array(index, length, callback, onerror) { 141 | callback(new Uint8Array(arrayBuffer.slice(index, index + length))); 142 | } 143 | 144 | that.size = 0; 145 | that.init = init; 146 | that.readUint8Array = readUint8Array; 147 | } 148 | ArrayBufferReader.prototype = new Reader(); 149 | ArrayBufferReader.prototype.constructor = ArrayBufferReader; 150 | 151 | function ArrayBufferWriter() { 152 | var array, that = this; 153 | 154 | function init(callback, onerror) { 155 | array = new Uint8Array(); 156 | callback(); 157 | } 158 | 159 | function writeUint8Array(arr, callback, onerror) { 160 | var tmpArray = new Uint8Array(array.length + arr.length); 161 | tmpArray.set(array); 162 | tmpArray.set(arr, array.length); 163 | array = tmpArray; 164 | callback(); 165 | } 166 | 167 | function getData(callback) { 168 | callback(array.buffer); 169 | } 170 | 171 | that.init = init; 172 | that.writeUint8Array = writeUint8Array; 173 | that.getData = getData; 174 | } 175 | ArrayBufferWriter.prototype = new Writer(); 176 | ArrayBufferWriter.prototype.constructor = ArrayBufferWriter; 177 | 178 | function FileWriter(fileEntry, contentType) { 179 | var writer, that = this; 180 | 181 | function init(callback, onerror) { 182 | fileEntry.createWriter(function(fileWriter) { 183 | writer = fileWriter; 184 | callback(); 185 | }, onerror); 186 | } 187 | 188 | function writeUint8Array(array, callback, onerror) { 189 | var blob = new Blob([ appendABViewSupported ? array : array.buffer ], { 190 | type : contentType 191 | }); 192 | writer.onwrite = function() { 193 | writer.onwrite = null; 194 | callback(); 195 | }; 196 | writer.onerror = onerror; 197 | writer.write(blob); 198 | } 199 | 200 | function getData(callback) { 201 | fileEntry.file(callback); 202 | } 203 | 204 | that.init = init; 205 | that.writeUint8Array = writeUint8Array; 206 | that.getData = getData; 207 | } 208 | FileWriter.prototype = new Writer(); 209 | FileWriter.prototype.constructor = FileWriter; 210 | 211 | zip.FileWriter = FileWriter; 212 | zip.HttpReader = HttpReader; 213 | zip.HttpRangeReader = HttpRangeReader; 214 | zip.ArrayBufferReader = ArrayBufferReader; 215 | zip.ArrayBufferWriter = ArrayBufferWriter; 216 | 217 | if (zip.fs) { 218 | ZipDirectoryEntry = zip.fs.ZipDirectoryEntry; 219 | ZipDirectoryEntry.prototype.addHttpContent = function(name, URL, useRangeHeader) { 220 | function addChild(parent, name, params, directory) { 221 | if (parent.directory) 222 | return directory ? new ZipDirectoryEntry(parent.fs, name, params, parent) : new zip.fs.ZipFileEntry(parent.fs, name, params, parent); 223 | else 224 | throw "Parent entry is not a directory."; 225 | } 226 | 227 | return addChild(this, name, { 228 | data : URL, 229 | Reader : useRangeHeader ? HttpRangeReader : HttpReader 230 | }); 231 | }; 232 | ZipDirectoryEntry.prototype.importHttpContent = function(URL, useRangeHeader, onend, onerror) { 233 | this.importZip(useRangeHeader ? new HttpRangeReader(URL) : new HttpReader(URL), onend, onerror); 234 | }; 235 | zip.fs.FS.prototype.importHttpContent = function(URL, useRangeHeader, onend, onerror) { 236 | this.entries = []; 237 | this.root = new ZipDirectoryEntry(this); 238 | this.root.importHttpContent(URL, useRangeHeader, onend, onerror); 239 | }; 240 | } 241 | 242 | })(); 243 | -------------------------------------------------------------------------------- /lib/WebContent/zlib-asm/codecs.js: -------------------------------------------------------------------------------- 1 | /// wrapper for zlib-asm (https://github.com/ukyo/zlib-asm) 2 | 3 | /* globals zlib */ 4 | (function(global) { 5 | "use strict"; 6 | 7 | function Codec(isDeflater, options) { 8 | this._isDeflater = isDeflater; 9 | if (options && typeof options.level === 'number') 10 | this.level = options.level; 11 | this._inputLength = 0; 12 | this._input = []; 13 | } 14 | Codec.prototype.append = function append(bytes, onprogress) { 15 | this._inputLength += bytes.length; 16 | this._input.push(bytes); 17 | }; 18 | Codec.prototype.flush = function flush() { 19 | var bytes; 20 | var input = this._input; 21 | if (input.length === 1) 22 | bytes = input[0]; 23 | else { 24 | bytes = new Uint8Array(this._inputLength); 25 | for (var i = 0, n = input.length, off = 0; i < n; i++) { 26 | var slice = input[i]; 27 | bytes.set(slice, off); 28 | off += slice.length; 29 | } 30 | } 31 | return this._isDeflater ? 32 | zlib.rawDeflate(bytes, this.level) : 33 | zlib.rawInflate(bytes); 34 | }; 35 | 36 | function Deflater(options) { 37 | Codec.call(this, true, options); 38 | } 39 | Deflater.prototype = Object.create(Codec.prototype); 40 | function Inflater() { 41 | Codec.call(this, false); 42 | } 43 | Inflater.prototype = Object.create(Codec.prototype); 44 | 45 | // 'zip' may not be defined in z-worker and some tests 46 | var env = global.zip || global; 47 | env.Deflater = env._zlib_asm_Deflater = Deflater; 48 | env.Inflater = env._zlib_asm_Inflater = Inflater; 49 | })(this); -------------------------------------------------------------------------------- /screencaps/Buttons.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/Buttons.png -------------------------------------------------------------------------------- /screencaps/Cluster1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/Cluster1.png -------------------------------------------------------------------------------- /screencaps/Cluster2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/Cluster2.png -------------------------------------------------------------------------------- /screencaps/ClusteringThreshold.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/ClusteringThreshold.png -------------------------------------------------------------------------------- /screencaps/Hover.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/Hover.png -------------------------------------------------------------------------------- /screencaps/OverTime.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/OverTime.png -------------------------------------------------------------------------------- /screencaps/PinAndMark.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/PinAndMark.png -------------------------------------------------------------------------------- /screencaps/Supplement.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/Supplement.png -------------------------------------------------------------------------------- /screencaps/VisibilityThreshold.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/VisibilityThreshold.png -------------------------------------------------------------------------------- /screencaps/teaser.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CreativeCodingLab/DynamicInfluenceNetworks/6a05862e365780ee19bc62bb7c9f894c26c3b1dc/screencaps/teaser.png -------------------------------------------------------------------------------- /src/css/main.css: -------------------------------------------------------------------------------- 1 | @import url(//netdna.bootstrapcdn.com/font-awesome/3.2.1/css/font-awesome.css); 2 | 3 | html, body, .fluidContainer, .mainCol { 4 | overflow: hidden; 5 | 6 | height:100%; 7 | 8 | font-size:2.5vmin; 9 | line-height:2.75vmin; 10 | 11 | -webkit-font-smoothing:antialiased; 12 | -moz-osx-font-smoothing:grayscale; 13 | } 14 | body { 15 | margin: 0; 16 | 17 | font-family: 'istok web','source sans', 'helvetica neue', helvetica, arial, sans-serif; 18 | } 19 | 20 | #help { 21 | position:absolute; 22 | z-index:1000; 23 | top:0; 24 | right:0; 25 | padding:1vmin 2.1vmin; 26 | font-size:1.8vmin; 27 | font-weight:400; 28 | pointer-events:none; 29 | } 30 | #help.active { 31 | pointer-events:auto; 32 | } 33 | 34 | #help h4 { 35 | margin:0; 36 | text-align: right; 37 | cursor:pointer; 38 | letter-spacing:0.05em; 39 | text-transform: uppercase; 40 | pointer-events:auto; 41 | } 42 | #help h4:after { 43 | font-family:FontAwesome; 44 | font-size:1.3em; 45 | content:'\f059'; 46 | } 47 | #help.active h4:after { 48 | content:'\f00d'; 49 | } 50 | 51 | #help > div { 52 | background-color: #fdfdf9; 53 | padding:2vmin; 54 | border-radius:0.8vmin; 55 | border:0.2vmin solid #dcb; 56 | transform:scaleY(0); 57 | transform-origin:top; 58 | transition:transform 200ms ease; 59 | max-width:25vw; 60 | } 61 | 62 | #help.active > div { 63 | display:block; 64 | transform:scaleY(1); 65 | } 66 | 67 | #help blockquote { 68 | margin: 1.2em 0; 69 | border-left: 0.2vmin dashed #aaa; 70 | padding-left: 1.5vw; 71 | } 72 | 73 | #help+* { 74 | margin-top: 5vh; 75 | } 76 | 77 | #linegraph-help { 78 | color:#888; 79 | padding:0 2vw; 80 | text-align: center; 81 | position:absolute; 82 | top:30vh; 83 | } 84 | 85 | .row { 86 | margin-bottom:2vh; 87 | position:relative; 88 | } 89 | 90 | .row .datalog { 91 | position:absolute; 92 | right:4vmin; 93 | top:0.5vmin; 94 | } 95 | .row .datalog:after { 96 | cursor:pointer; 97 | font-family:FontAwesome; 98 | content:'\f15c'; 99 | position:absolute; 100 | } 101 | 102 | .phenograph { 103 | height:20vh; 104 | } 105 | 106 | .linegraph { 107 | height: 30vh; 108 | } 109 | 110 | .focusslider { 111 | height: 5vh; 112 | } 113 | 114 | .mainCol { 115 | position:relative; 116 | 117 | width:70%; 118 | height:100%; 119 | } 120 | .sideCol { 121 | position:absolute; 122 | top:0; 123 | left:70%; 124 | 125 | overflow:auto; 126 | 127 | width:30%; 128 | height:100%; 129 | margin:0; 130 | 131 | border-left:1px solid #eee; 132 | } 133 | 134 | .rule,.link,.text { 135 | cursor:pointer; 136 | } 137 | 138 | .painting .rule-node { 139 | /* 140 | Icon made by Freepik (freepik.com) from Flaticon (www.flaticon.com) is licensed by Creative Commons 3.0 BY 141 | */ 142 | cursor: url("data:image/svg+xml;utf8;base64,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"), crosshair; 143 | } 144 | .rule-node { 145 | stroke:white; 146 | stroke-opacity:0.5; 147 | stroke-width:1.5; 148 | } 149 | 150 | .rule-text { 151 | letter-spacing: 0.1px; 152 | 153 | text-shadow:0 0 1px #333; 154 | 155 | font-size:14px; 156 | 157 | fill:white; 158 | } 159 | .node-to-graph { 160 | opacity:1 !important; 161 | 162 | stroke-opacity:1 !important; 163 | stroke-width:2.5; 164 | } 165 | 166 | #tip, #legendContainer { 167 | position:absolute; 168 | top:0; 169 | left:0; 170 | } 171 | #tip { 172 | padding:1vmin 1.5vmin; 173 | 174 | letter-spacing: 0.1vmin; 175 | pointer-events:none; 176 | 177 | opacity:0; 178 | color:white; 179 | border-radius: 0 0 8px 0; 180 | background: rgba(30,30,30,0.8); 181 | 182 | font-size: 0.85em; 183 | } 184 | 185 | #legendContainer { 186 | overflow: hidden; 187 | 188 | width: 100%; 189 | height: 100%; 190 | margin-right: 15px; 191 | 192 | pointer-events: none; 193 | } 194 | 195 | #legendContainer > div { 196 | position:absolute; 197 | } 198 | 199 | rect.slider { 200 | cursor:pointer; 201 | } 202 | 203 | .columns { 204 | max-width:50vw; 205 | margin-left:2vw; 206 | 207 | column-count:2; 208 | -webkit-column-count:2; 209 | -moz-column-count:2; 210 | column-gap:3vw; 211 | -webkit-column-gap:3vw; 212 | -moz-column-gap:3vw; 213 | } 214 | .columns span { 215 | display:block; 216 | 217 | font-size: 2vmin; 218 | line-height:3vmin; 219 | } 220 | 221 | #filename { 222 | font-size:1.8vmin; 223 | line-height:2.5vmin; 224 | } 225 | 226 | button,input { 227 | outline:none; 228 | } 229 | 230 | button { 231 | cursor:pointer; 232 | 233 | color:inherit; 234 | background-color:transparent; 235 | 236 | font-family: inherit; 237 | font-size: inherit; 238 | } 239 | 240 | .slider-tab { 241 | fill:#ccc; 242 | } 243 | .slider-tab.active { 244 | fill:#5bf; 245 | } 246 | 247 | .toggle-axis-scale { 248 | color:#999; 249 | 250 | fill:#999; 251 | } 252 | .toggle-axis-scale .active { 253 | color:#2c7fb8; 254 | 255 | fill:#2c7fb8; 256 | } 257 | .toggle-axis-scale { 258 | cursor:default; 259 | } 260 | .toggle-axis-scale .log, .toggle-axis-scale .linear { 261 | cursor:pointer; 262 | } 263 | 264 | /*Animation controls*/ 265 | .animationControls { 266 | position:absolute; 267 | 268 | padding:0.5vmin; 269 | 270 | -webkit-user-select: none; /* Chrome/Safari/Opera */ 271 | -moz-user-select: none; /* Firefox */ 272 | -ms-user-select: none; /* Internet Explorer/Edge */ 273 | user-select: none; /* Non-prefixed version, currently 274 | not supported by any browser */ 275 | white-space: nowrap; 276 | pointer-events:none; 277 | 278 | color:white; 279 | 280 | font-size:0.7em; 281 | line-height:0.7em; 282 | 283 | -webkit-touch-callout: none; /* iOS Safari */ 284 | -khtml-user-select: none; /* Konqueror */ 285 | 286 | } 287 | .animationSpeedDiv { 288 | display:inline-block; 289 | 290 | width:3em; 291 | 292 | text-align:center; 293 | } 294 | .animationSpeed { 295 | margin:0; 296 | 297 | font-weight:bold; 298 | } 299 | i.animationIcon { 300 | display:inline-block; 301 | 302 | width:0.9em; 303 | margin:0 0.75vmin; 304 | 305 | cursor:pointer; 306 | text-align: center; 307 | pointer-events:auto; 308 | 309 | font-family: FontAwesome; 310 | font-style:normal; 311 | } 312 | .frIcon:before { 313 | content:"\f049"; 314 | } 315 | .sbIcon:before { 316 | content:"\f048"; 317 | } 318 | .ppIcon:before { 319 | content:"\f04b"; 320 | } 321 | .ppIcon.paused:before { 322 | content:"\f04c"; 323 | } 324 | .sfIcon:before { 325 | content:"\f051"; 326 | } 327 | .ffIcon:before { 328 | content:"\f050"; 329 | } 330 | -------------------------------------------------------------------------------- /src/css/toolbar.css: -------------------------------------------------------------------------------- 1 | /* position overrides if toolbar is showing */ 2 | #toolbar ~ #tip, #toolbar ~ #legendContainer { 3 | transform: translateY(5.5vmin); 4 | } 5 | #toolbar { 6 | position:absolute; 7 | z-index:1000; 8 | top:0; 9 | left:0; 10 | 11 | width:100%; 12 | padding:0; 13 | 14 | -webkit-user-select: none; /* Chrome/Safari/Opera */ 15 | -moz-user-select: none; /* Firefox */ 16 | -ms-user-select: none; /* Internet Explorer/Edge */ 17 | user-select: none; /* Non-prefixed version, currently 18 | not supported by any browser */ 19 | transition:transform 200ms ease, background-color 100ms ease; 20 | white-space: nowrap; 21 | pointer-events:none; 22 | 23 | color:#555; 24 | 25 | font-size: 2vmin; 26 | 27 | -webkit-touch-callout: none; /* iOS Safari */ 28 | -khtml-user-select: none; /* Konqueror */ 29 | } 30 | 31 | #toolbar > * { 32 | pointer-events:auto; 33 | } 34 | 35 | #toolbar-nav-left, #toolbar-nav-right { 36 | position:absolute; 37 | z-index:100; 38 | 39 | width:4vmin; 40 | height:4.5vmin; 41 | 42 | transition:opacity 100ms ease; 43 | 44 | opacity:0.4; 45 | } 46 | #toolbar-nav-left { 47 | left:0; 48 | } 49 | #toolbar-nav-right { 50 | right:0; 51 | } 52 | #toolbar-nav-left:hover, #toolbar-nav-right:hover { 53 | opacity:0.6; 54 | } 55 | #toolbar-nav-left:before, #toolbar-nav-right:before { 56 | position:absolute; 57 | z-index:10; 58 | top:0; 59 | 60 | width:100%; 61 | height:100%; 62 | 63 | cursor:pointer; 64 | 65 | background:rgba(220,220,220,0.5); 66 | 67 | font-family:FontAwesome; 68 | } 69 | #toolbar-nav-left:before { 70 | left:0; 71 | 72 | content:'\f104'; 73 | 74 | font-size:3vmin; 75 | line-height:4.5vmin; 76 | } 77 | #toolbar-nav-right:before { 78 | left:0; 79 | 80 | content:'\f105'; 81 | 82 | font-size:3vmin; 83 | line-height:4.5vmin; 84 | } 85 | 86 | #toolbar > * { 87 | text-align: center; 88 | } 89 | #toolbar > span:first-of-type { 90 | padding-left:5vmin; 91 | } 92 | #toolbar > span:last-of-type { 93 | padding-right:5vmin; 94 | } 95 | 96 | #toolbar > span { 97 | display:inline-block; 98 | 99 | min-height:2.5vmin; 100 | padding:1vmin 2vw; 101 | 102 | transition:transform 200ms ease; 103 | vertical-align: top; 104 | 105 | background-color:white; 106 | } 107 | 108 | #toolbar > span + span { 109 | border-left:0.2vmin solid #ddd; 110 | } 111 | 112 | #toolbar h4 { 113 | margin:0 0 0.5vmin 0; 114 | 115 | cursor:pointer; 116 | letter-spacing:0.05em; 117 | text-transform: uppercase; 118 | 119 | color:crimson; 120 | 121 | font-size:0.9em; 122 | font-weight:400; 123 | } 124 | 125 | #toolbar h4 ~ div { 126 | overflow:hidden; 127 | 128 | margin-top:-100vh; 129 | 130 | transition: margin-top 200ms ease, opacity 200ms ease; 131 | pointer-events:none; 132 | 133 | opacity:0; 134 | } 135 | 136 | #toolbar span.active > div { 137 | margin-top:0; 138 | padding:1vmin 0; 139 | 140 | pointer-events:auto; 141 | 142 | opacity:1; 143 | } 144 | 145 | /* dataset change button */ 146 | #toolbar .ui-data h4:after { 147 | margin-left:1vmin; 148 | 149 | content: ''; 150 | 151 | font-family: FontAwesome; 152 | } 153 | #toolbar .ui-data.done h4:after { 154 | content: '\f00c'; 155 | } 156 | #toolbar .ui-data.error h4:after { 157 | content: '\f071'; 158 | } 159 | @keyframes spin { 160 | from {transform:rotate(0deg);} 161 | to {transform:rotate(360deg);} 162 | } 163 | #toolbar .ui-data.loading h4:after { 164 | display:inline-block; 165 | 166 | content: '\f110'; 167 | animation: spin 3s infinite linear; 168 | } 169 | 170 | #toolbar #changeFile { 171 | margin-top:-0.5vmin; 172 | 173 | text-decoration: underline; 174 | 175 | border:none; 176 | border-radius:none; 177 | } 178 | 179 | input[type="checkbox"] + label[for="show-labels"]:before { 180 | content: "\f070"; 181 | } 182 | input[type="checkbox"]:checked + label[for="show-labels"]:before { 183 | content: "\f06e"; 184 | } 185 | 186 | /*Clustering controls*/ 187 | .ui-clusters > div { 188 | margin-top:0.5vmin; 189 | margin-left:0.8vw; 190 | } 191 | 192 | #set-threshold { 193 | width: 4vw; 194 | } 195 | 196 | #set-timewindow { 197 | width: 2vw; 198 | } 199 | 200 | /* range slider */ 201 | .ui-labels > div { 202 | margin-top:0.5vmin; 203 | margin-left:0.8vw; 204 | } 205 | .ui-labels input[type="range"] { 206 | width: 7vw; 207 | margin: 0.2vw; 208 | 209 | -webkit-appearance: none; 210 | } 211 | .ui-labels input[type="range"]:focus { 212 | outline: none; 213 | } 214 | .ui-labels input[type="range"]::-webkit-slider-runnable-track { 215 | width: 7vw; 216 | height:0.375vw; 217 | 218 | cursor: pointer; 219 | 220 | border: 0 solid #010101; 221 | border-radius:2vw; 222 | background: #9e9e9e; 223 | } 224 | .ui-labels input[type="range"]::-webkit-slider-thumb { 225 | width: 1.5vw; 226 | height: 1.5vw; 227 | margin-top: -0.5vw; 228 | 229 | cursor: pointer; 230 | 231 | border: 0.1vmin solid rgba(100, 100, 100, 0.45); 232 | border-radius:50%; 233 | background: #e6e6e6; 234 | 235 | -webkit-appearance: none; 236 | } 237 | .ui-labels input[type="range"]:focus::-webkit-slider-runnable-track { 238 | background: #999999; 239 | } 240 | .ui-labels input[type="range"]::-moz-range-track { 241 | width: 7vw; 242 | height:0.5vmin; 243 | 244 | cursor: pointer; 245 | 246 | border: 0 solid #010101; 247 | border-radius:2vw; 248 | background: #9e9e9e; 249 | } 250 | .ui-labels input[type="range"]::-moz-range-thumb { 251 | width: 1.5vw; 252 | height: 1.5vw; 253 | 254 | cursor: pointer; 255 | 256 | border: 0.1vmin solid rgba(100, 100, 100, 0.45); 257 | border-radius:50%; 258 | background: #e6e6e6; 259 | } 260 | .ui-labels input[type="range"]::-ms-track { 261 | width: 7vw; 262 | height:0.5vmin; 263 | 264 | cursor: pointer; 265 | 266 | color: transparent; 267 | border-color: transparent; 268 | background: transparent; 269 | } 270 | .ui-labels input[type="range"]::-ms-fill-lower { 271 | border: 0 solid #010101; 272 | border-radius: 50%; 273 | background: #b1b1b1; 274 | } 275 | .ui-labels input[type="range"]::-ms-fill-upper { 276 | border: 0 solid #010101; 277 | border-radius: 50%; 278 | background: #9e9e9e; 279 | } 280 | .ui-labels input[type="range"]::-ms-thumb { 281 | width: 1.5vw; 282 | height: 1.5vw; 283 | height:0.5vmin; 284 | 285 | cursor: pointer; 286 | 287 | border: 0.1vmin solid rgba(100, 100, 100, 0.45); 288 | border-radius:50%; 289 | background: #e6e6e6; 290 | } 291 | .ui-labels input[type="range"]:focus::-ms-fill-lower { 292 | background: #9e9e9e; 293 | } 294 | .ui-labels input[type="range"]:focus::-ms-fill-upper { 295 | background: #999999; 296 | } 297 | 298 | /* influences */ 299 | input[type="checkbox"] + label[for="hide-positive"]:before { 300 | content: "\f070"; 301 | } 302 | input[type="checkbox"]:checked + label[for="hide-positive"]:before { 303 | content: "\f06e"; 304 | } 305 | input[type="checkbox"] + label[for="hide-negative"]:before { 306 | content: "\f070"; 307 | } 308 | input[type="checkbox"]:checked + label[for="hide-negative"]:before { 309 | content: "\f06e"; 310 | } 311 | 312 | /* pinning and marking nodes */ 313 | .ui-mark h4 span { 314 | display:none; 315 | 316 | width:1.5vmin; 317 | height:1.5vmin; 318 | 319 | vertical-align: middle; 320 | } 321 | .painting .ui-mark h4 span { 322 | display:inline-block; 323 | 324 | margin-left:1vmin; 325 | } 326 | .ui-mark button { 327 | display:block; 328 | 329 | width:100%; 330 | } 331 | 332 | #toolbar button.cs { 333 | display:inline-block; 334 | 335 | width: 2.3vmin; 336 | height: 2.3vmin; 337 | padding:0; 338 | 339 | opacity:0.7; 340 | border:0.4vmin solid transparent; 341 | } 342 | #toolbar button.cs:hover { 343 | opacity:1; 344 | } 345 | #toolbar button.cs.active { 346 | opacity:1; 347 | border-color:#444; 348 | } 349 | 350 | input[type="checkbox"] + label[for="paint-start"]:before { 351 | margin-left:-1.3vmin; 352 | 353 | content: '\f044'; 354 | 355 | font-family:FontAwesome; 356 | font-size:2.2vmin; 357 | } 358 | input[type="checkbox"]:checked + label[for="paint-start"]:before { 359 | content: '\f046'; 360 | 361 | font-family: FontAwesome; 362 | font-size:2.2vmin; 363 | } 364 | #toolbar button#paint-reset { 365 | display:inline; 366 | 367 | width:initial; 368 | margin-left:2.8vmin; 369 | padding:0; 370 | 371 | border:none; 372 | } 373 | #paint-reset:before { 374 | content: '\f0e2'; 375 | 376 | font-family: FontAwesome; 377 | } 378 | 379 | #palette { 380 | overflow:hidden; 381 | 382 | width:16vmin; 383 | height:0; 384 | 385 | text-align: left; 386 | white-space: initial; 387 | } 388 | 389 | #palette.active { 390 | height:100%; 391 | } 392 | 393 | #palette > div + div { 394 | margin-top:1vmin; 395 | } 396 | #palette > div:before { 397 | display:block; 398 | float:left; 399 | 400 | width:2vmin; 401 | margin-right:1vmin; 402 | 403 | vertical-align: top; 404 | 405 | font-family: FontAwesome; 406 | line-height: 5vmin; 407 | } 408 | 409 | #palette-1:before { 410 | content: '\f069'; 411 | } 412 | 413 | #palette-2:before { 414 | content: '\f02b'; 415 | } 416 | 417 | /* color theme */ 418 | .ui-legend .theme-color { 419 | position:relative; 420 | 421 | display:inline-block; 422 | 423 | width:9vmin; 424 | height:0.6vmin; 425 | margin:0.3vmin 0 0.5vmin 0.5vmin; 426 | 427 | vertical-align: middle; 428 | } 429 | .ui-legend .pos { 430 | background-image: linear-gradient(to right, #fee08b, #fdae61, #f46d43, #d73027); 431 | } 432 | .ui-legend .neg { 433 | background-image: linear-gradient(to right, #d9ef8b, #a6d96a, #66bd63, #1a9850); 434 | } 435 | 436 | /* legend */ 437 | #toolbar div.center { 438 | display:block; 439 | 440 | margin: 0.5vmin 0; 441 | 442 | text-align: center; 443 | text-transform: uppercase; 444 | 445 | font-size:0.9em; 446 | } 447 | #toolbar div.left-align { 448 | text-align:left; 449 | } 450 | .ui-legend .legend-type { 451 | text-align: right; 452 | } 453 | .ui-legend .legend-type div { 454 | display:inline-block; 455 | } 456 | .legend-type.hits div { 457 | width:2vmin; 458 | height:2vmin; 459 | 460 | border-radius:50%; 461 | background:#1f77b4; 462 | } 463 | .legend-type.hits div:first-of-type { 464 | width:0.5vmin; 465 | height:0.5vmin; 466 | margin:0 0.75vmin; 467 | } 468 | .legend-type.hits div:nth-of-type(2) { 469 | width:1vmin; 470 | height:1vmin; 471 | margin:0 0.5vmin; 472 | } 473 | .legend-type.hits div:nth-of-type(3) { 474 | width:1.5vmin; 475 | height:1.5vmin; 476 | margin:0 0.25vmin; 477 | } 478 | 479 | .legend-type.inf div { 480 | width:2vmin; 481 | height:0.8vmin; 482 | 483 | background:#66bd63; 484 | } 485 | .legend-type.inf div:first-of-type { 486 | height:0.2vmin; 487 | } 488 | .legend-type.inf div:nth-of-type(2) { 489 | height:0.4vmin; 490 | } 491 | .legend-type.inf div:nth-of-type(3) { 492 | height:0.6vmin; 493 | } 494 | 495 | /* buttons */ 496 | #toolbar button { 497 | margin-bottom: 0.5vmin; 498 | padding:0 1vmin; 499 | 500 | border:0.2vmin solid #ddd; 501 | } 502 | 503 | /* text input */ 504 | input[type="text"] { 505 | margin-bottom:1vmin; 506 | 507 | font-size:inherit; 508 | } 509 | 510 | /* checkbox labels */ 511 | input[type="checkbox"] { 512 | display: none; 513 | 514 | width: 2vmin; 515 | height: 2vmin; 516 | 517 | cursor:pointer; 518 | } 519 | 520 | input[type="checkbox"] + label { 521 | margin-left:1vmin; 522 | } 523 | input[type="checkbox"] + label:before { 524 | position:absolute; 525 | 526 | margin-left:-3vmin; 527 | 528 | content: "\f10c"; 529 | cursor:pointer; 530 | 531 | font-family: FontAwesome; 532 | font-size: 2vmin; 533 | } 534 | 535 | input[type="checkbox"]:checked + label:before { 536 | content: "\f058"; 537 | } 538 | 539 | input[type="checkbox"]:checked + label, input[type="checkbox"]:checked + label:before { 540 | color:#2c7fb8; 541 | } 542 | 543 | .cs0 { background-color: #1f77b4; } 544 | .cs1 { background-color: #aec7e8; } 545 | .cs2 { background-color: #ff7f0e; } 546 | .cs3 { background-color: #ffbb78; } 547 | .cs4 { background-color: #2ca02c; } 548 | .cs5 { background-color: #98df8a; } 549 | .cs6 { background-color: #d62728; } 550 | .cs7 { background-color: #ff9896; } 551 | .cs8 { background-color: #9467bd; } 552 | .cs9 { background-color: #c5b0d5; } 553 | .cs10 { background-color: #8c564b; } 554 | .cs11 { background-color: #c49c94; } 555 | .cs12 { background-color: #e377c2; } 556 | .cs13 { background-color: #f7b6d2; } 557 | .cs14 { background-color: #7f7f7f; } 558 | .cs15 { background-color: #c7c7c7; } 559 | .cs16 { background-color: #bcbd22; } 560 | .cs17 { background-color: #dbdb8d; } 561 | .cs18 { background-color: #17becf; } 562 | .cs19 { background-color: #9edae5; } 563 | .cs20 { position:relative; } 564 | 565 | .cs20:after, 566 | .cs20.active:after { 567 | border-color: transparent; 568 | } 569 | .cs20:after { 570 | position:absolute; 571 | top:0; 572 | left:0; 573 | 574 | display:block; 575 | 576 | width:1.95vmin; 577 | height:1.95vmin; 578 | margin-top:-0.3vmin; 579 | margin-left:-0.3vmin; 580 | 581 | content: ''; 582 | 583 | border: 0.2vmin solid #f55; 584 | } 585 | .cs20:before { 586 | display:block; 587 | 588 | height:3vmin; 589 | margin-top:-0.3vmin; 590 | margin-left:0.5vmin; 591 | padding:0; 592 | 593 | content: ''; 594 | transform: rotate(45deg); 595 | 596 | border-left: 0.2vmin solid #f55; 597 | } 598 | -------------------------------------------------------------------------------- /src/js/animation.js: -------------------------------------------------------------------------------- 1 | var App = App || {}; 2 | 3 | // handles the animation of the DIM simulation 4 | function AnimationManager() { 5 | this.isActive = true; 6 | 7 | this.currentTime = 0; // in terms of timestep 8 | this.totalTime = 1; 9 | this.isPlaying = false; 10 | 11 | this.speed = 1; // plays at real speed to begin with 12 | 13 | this.updateTimestep = 50; // 50ms between updates of animation 14 | 15 | var that = this; 16 | 17 | // set up event handlers for buttons 18 | d3.select(".frIcon") 19 | .on("click", function(d) { 20 | that.decreaseSpeed(); 21 | }); 22 | 23 | d3.select(".sbIcon") 24 | .on("click", function(d) { 25 | that.stepBackward(); 26 | }); 27 | 28 | d3.select(".ppIcon") 29 | .on("click", function(d) { 30 | that.togglePlay(); // change icon 31 | }); 32 | 33 | d3.select(".sfIcon") 34 | .on("click", function(d) { 35 | that.stepForward(); 36 | }); 37 | 38 | d3.select(".ffIcon") 39 | .on("click", function(d) { 40 | that.increaseSpeed(); 41 | }); 42 | } 43 | 44 | AnimationManager.prototype.setActive = function(active) { 45 | // set active to false 46 | this.isActive = active; 47 | 48 | d3.select(".animationControls") 49 | .style("display", active ? "initial" : "none"); 50 | } 51 | 52 | AnimationManager.prototype.setTotalTimesteps = function(t) { 53 | this.totalTime = t - 1; 54 | 55 | if (this.totalTime <= 1) { 56 | this.setActive(false); 57 | } else { 58 | this.setActive(true); 59 | } 60 | } 61 | 62 | AnimationManager.prototype.togglePlay = function() { 63 | // toggle between playing and paused 64 | this.isPlaying = !this.isPlaying; 65 | d3.select(".ppIcon").classed('paused', this.isPlaying); 66 | 67 | var that = this; 68 | 69 | function playFunc() { 70 | var startData = App.dataset[Math.floor(that.currentTime)]; 71 | var endData = App.dataset[Math.floor(that.currentTime) + 1]; 72 | 73 | // console.log(this); 74 | 75 | var timeRange = [ 76 | startData.timeWindow[1], 77 | endData.timeWindow[1] 78 | ]; 79 | 80 | var ms_delt = that.updateTimestep * that.speed; // time elapsed this update 81 | var t_delt = (timeRange[1] - timeRange[0]) * 1000; // total ms between timesteps 82 | var t_pc = ms_delt / t_delt; 83 | 84 | that.currentTime = (that.currentTime + t_pc) % that.totalTime; 85 | // console.log(that.currentTime); 86 | if (isNaN(that.currentTime)) { 87 | that.currentTime = 0; 88 | } 89 | 90 | that.updateData(); 91 | 92 | if (that.isPlaying) { 93 | setTimeout( playFunc, that.updateTimestep ); 94 | } 95 | else { 96 | // restart simulation on pause 97 | App.panels.forceDirected.simulation 98 | .alpha(0.3) 99 | .restart(); 100 | } 101 | } 102 | 103 | setTimeout( playFunc, this.updateTimestep ); 104 | } 105 | 106 | AnimationManager.prototype.stepForward = function() { 107 | this.currentTime = Math.floor(this.currentTime + 1) % this.totalTime; 108 | 109 | if (this.isPlaying) { 110 | this.togglePlay(); 111 | } 112 | 113 | this.updateData(); 114 | 115 | App.panels.forceDirected.simulation 116 | .alpha(0.3) 117 | .restart(); 118 | } 119 | 120 | AnimationManager.prototype.stepBackward = function() { 121 | this.currentTime = (Math.ceil(this.currentTime - 1) + this.totalTime) % this.totalTime; 122 | 123 | if (this.isPlaying) { 124 | this.togglePlay(); 125 | } 126 | 127 | this.updateData(); 128 | 129 | App.panels.forceDirected.simulation 130 | .alpha(0.3) 131 | .restart(); 132 | } 133 | 134 | AnimationManager.prototype.increaseSpeed = function() { 135 | // increase speed of play 136 | if (this.speed < 32) { 137 | this.speed *= 2; 138 | } 139 | 140 | var speed = this.speed < 1 ? "1/" + (1/this.speed).toFixed(0) : "" + this.speed; 141 | 142 | d3.select(".animationSpeed") 143 | .text(speed + "x"); 144 | } 145 | 146 | AnimationManager.prototype.decreaseSpeed = function() { 147 | // decrease speed of play 148 | if (this.speed > 1/32) { 149 | this.speed /= 2; 150 | } 151 | 152 | var speed = this.speed < 1 ? "1/" + (1/this.speed).toFixed(0) : "" + this.speed; 153 | 154 | d3.select(".animationSpeed") 155 | .text(speed + "x"); 156 | } 157 | 158 | AnimationManager.prototype.updateData = function() { 159 | // interpolate values between timesteps 160 | var startData = App.dataset[Math.floor(this.currentTime)]; 161 | var endData = App.dataset[Math.floor(this.currentTime) + 1]; 162 | 163 | if (startData.timeWindow) { 164 | var timeRange = startData.timeWindow.map(n => +(n.toFixed(2)) ); 165 | App.timeSlider.setTitle('Time: ' + timeRange[0] + '-' + timeRange[1]); 166 | } 167 | 168 | var keys = Object.keys(startData.data); 169 | 170 | var t_pcElap = this.currentTime - Math.floor(this.currentTime); // % elapsed between timesteps 171 | 172 | var interpolatedData = {}; 173 | 174 | for (var key of keys) { 175 | interpolatedData[key] = { 176 | name: key, 177 | hits: interpolateHits(t_pcElap, startData.data[key].hits, endData.data[key].hits), 178 | inf: interpolateFlux(t_pcElap, startData.data[key].inf, endData.data[key].inf), 179 | outf: interpolateFlux(t_pcElap, startData.data[key].outf, endData.data[key].outf) 180 | } 181 | } 182 | 183 | App.data = interpolatedData; 184 | 185 | // update other components in UI 186 | App.item = Math.round(this.currentTime); 187 | App.timeSlider.setPosition(this.currentTime); 188 | App.updateTimestep(); 189 | 190 | // h1: start hits, h2: end hits 191 | function interpolateHits(pcElap, h1, h2) { 192 | return h1 + (h2 - h1) * pcElap; 193 | } 194 | 195 | // f1: start fluxi, f2: end fluxi 196 | function interpolateFlux(pcElap, f1, f2) { 197 | var intFlux = new Array(f1.length); 198 | 199 | for (var ind in f1) { 200 | intFlux[ind] = { 201 | name: f1[ind].name, 202 | flux: f1[ind].flux + (f2[ind].flux - f1[ind].flux) * pcElap 203 | }; 204 | } 205 | 206 | return intFlux; 207 | } 208 | } 209 | 210 | AnimationManager.prototype.attachToSlider = function(slider) { 211 | // let bbox = slider.svg.node().getBBox(); 212 | function getPosition() { 213 | let rect = slider.svg.node().getBoundingClientRect(); 214 | let selfRect = d3.select('.animationControls').node().getBoundingClientRect(); 215 | d3.select('.animationControls') 216 | .style('left', rect.right - selfRect.width + 'px') 217 | .style('top', rect.top + 'px'); 218 | } 219 | var oldSliderResize = slider.resize.bind(slider); 220 | 221 | slider.resize = function() { 222 | oldSliderResize(); 223 | getPosition(); 224 | } 225 | getPosition(); 226 | } 227 | -------------------------------------------------------------------------------- /src/js/focusSlider.js: -------------------------------------------------------------------------------- 1 | function FocusSlider(selector) { 2 | this.container = document.querySelector(selector) || document.body; 3 | this.svg = d3.select( this.container ).append('svg'); 4 | 5 | this.margin = {top: 5, left: 50, bottom: 20, right: 20}; 6 | this.axis = this.svg.append('g'); 7 | 8 | this.bgraph = this.svg.append("g") 9 | .attr("class", "brush"); 10 | 11 | this.resize(); 12 | this.update(); 13 | } 14 | 15 | FocusSlider.prototype = { 16 | constructor: FocusSlider, 17 | resize: function() { 18 | var w = this.container.getBoundingClientRect().width - this.margin.right; 19 | var h = this.container.getBoundingClientRect().height; 20 | var aspect = w / h; 21 | var vw = 280; 22 | var vh = vw / aspect; 23 | 24 | this.width = vw; 25 | this.height = vh - this.margin.bottom; 26 | 27 | this.svg 28 | .style("font-size", "12px") 29 | .attr('width', w) 30 | .attr('height', h) 31 | .attr("viewBox", "0 0 " + vw + " " + vh) 32 | 33 | if(this.x) 34 | this.x.range([this.margin.left, this.width - 1]); 35 | 36 | this.drawAxes(); 37 | if (!this.brush) { 38 | this.drawBrush(); 39 | } 40 | }, 41 | drawAxes: function() { 42 | if (!this.x) { return; } 43 | this.axis 44 | .attr('transform', 'translate(0,' + this.height + ')') 45 | .call(d3.axisBottom(this.x) 46 | .tickFormat(d => { 47 | d = Math.floor(d); 48 | var data = App.dataset[d]; 49 | if (data && data.timeWindow && data.timeWindow[0]) { 50 | return Number(data.timeWindow[0].toFixed(1)); 51 | } 52 | return d; 53 | }) 54 | ); 55 | }, 56 | drawBrush: function() { 57 | if (!this.x) { return; } 58 | this.brush = d3.brushX() 59 | .extent([[this.margin.left, 0], [this.width, this.height]]) 60 | .on("brush end", this.brushed.bind(this)); 61 | this.bgraph 62 | .call(this.brush) 63 | .call(this.brush.move, this.x.range()); 64 | }, 65 | brushed: function() { 66 | var topVis = App.panels.topVis; 67 | var botVis = App.panels.bottomVis; 68 | 69 | var s = d3.event.selection || this.x.range(); 70 | var domain = s.map(this.x.invert, this.x); 71 | domain[0] = Math.round(domain[0]); 72 | domain[1] = Math.round(domain[1]); 73 | if (domain[0] !== domain[1]) { 74 | if (topVis && topVis.x) { 75 | topVis.x.domain(domain); 76 | topVis.updateFluxs(); 77 | topVis.updateGraph(); 78 | } 79 | if (botVis && botVis.x) { 80 | botVis.x.domain(domain); 81 | botVis.updateFluxs(); 82 | botVis.updateGraph(); 83 | } 84 | if (App.phenotype) { 85 | App.phenotype.updateDomain(domain); 86 | App.phenotype.drawMarkers(); 87 | } 88 | } 89 | }, 90 | update: function() { 91 | this.x = d3.scaleLinear() 92 | .domain([0, App.dataset.length - 1]) 93 | .range([this.margin.left, this.width - 1]); 94 | this.drawAxes(); 95 | this.drawBrush(); 96 | } 97 | } -------------------------------------------------------------------------------- /src/js/main.js: -------------------------------------------------------------------------------- 1 | 2 | var App = App || {}; 3 | 4 | // iife executed on script load 5 | (function() { 6 | App.timeWindow = [0, 0]; 7 | App.data = {}; 8 | App.item = 0; // starting with the first item 9 | 10 | App.panels = { 11 | forceDirected: {} 12 | }; 13 | 14 | App.init = function() { 15 | var url = document.URL.split('?')[1] || "flux_0.json"; 16 | App.loadData(url, true); 17 | new Toolbar(App); 18 | App.animation = new AnimationManager(); 19 | } 20 | 21 | App.resize = function() { 22 | // get new sizes of SVGs (using viewBox with SVG gives us resize for free..) 23 | getDimSVGs(); 24 | 25 | // call any necessary resize methods for visualization 26 | for(key in App.panels) { 27 | if (App.panels[key].resize) { 28 | App.panels[key].resize(); 29 | } 30 | } 31 | 32 | ['timeSlider', 'infSlider'].forEach(function(slider) { 33 | if (App[slider]) { 34 | App[slider].resize(); 35 | } 36 | }); 37 | 38 | App.phenotype.resize(); 39 | } 40 | 41 | App.draw = function() { 42 | createSVGs(); 43 | 44 | // put function calls here to draw 45 | var fd = App.panels.forceDirected; 46 | App.panels.forceDirected = new ForceDirectedGraph( { 47 | svg: fd.svg, 48 | width: fd.width, 49 | height: fd.height 50 | }) 51 | 52 | // instantiate sliders 53 | initSliders(); 54 | 55 | // line graphs 56 | App.panels.topVis = new LineGraph('#topVis', {out: false}); 57 | App.panels.bottomVis = new LineGraph('#bottomVis', {out: true}); 58 | App.panels.focusSlider = new FocusSlider('#focusSlider'); 59 | if (!App.phenotype) { 60 | App.phenotype = new Phenotype({path: 'data/PreyPred/data.csv'}); 61 | } 62 | } 63 | 64 | App.loadData = function(file, isSeries) { 65 | var dir = './data/'; 66 | 67 | var isFormattedSeries = isSeries; 68 | if (isSeries) { 69 | // attempt to load a series of files 70 | var fformat = file.match(/^(.*)(\d+)(.*)$/); 71 | if (fformat && fformat.length > 3) { 72 | var prefix = fformat[1], 73 | num = +fformat[2], 74 | suffix = fformat[3]; 75 | 76 | App.format = {prefix: prefix, start:num, suffix:suffix} 77 | 78 | var datasets = []; 79 | 80 | // recursively load next file 81 | function loadNext(err, json) { 82 | if (!err) { 83 | ++num; 84 | datasets.push(json); 85 | d3.json ( dir + prefix + num + suffix, loadNext ); 86 | } 87 | else if (datasets.length > 0) { 88 | // success!! 89 | App.handleData(datasets); 90 | } 91 | else { 92 | console.log('Error', err); 93 | } 94 | } 95 | 96 | d3.json(dir + file, loadNext); 97 | } 98 | else { 99 | isFormattedSeries = false; 100 | } 101 | } 102 | if (!isFormattedSeries) { 103 | // attempt to load a single file 104 | d3.json(dir + file, (err, json) => { 105 | if (err) { 106 | console.log('Error',err); 107 | return; 108 | } 109 | // success!! 110 | App.handleData([json]) 111 | }) 112 | } 113 | }; 114 | 115 | App.handleData = function(dataset) { 116 | d3.select('.ui-data') 117 | .classed('error', false) 118 | .classed('loading', false) 119 | .classed('done', true); 120 | App.dataset = dataset.map((json) => { 121 | 122 | var obj = {}; 123 | 124 | /* support old format */ 125 | if (json.din_rules === undefined) { 126 | json.din_start = json.bioBeginTime; 127 | json.din_end = json.bioEndTime; 128 | json.din_rules = json.rules; 129 | json.din_fluxs = json.fluxs; 130 | json.din_hits = json.hits; 131 | } 132 | 133 | obj.timeWindow = [+json.din_start, +json.din_end]; 134 | // console.log(obj.timeWindow); 135 | var data = {}; 136 | for (var n in json.din_rules) { 137 | data[json.din_rules[n]] = { 138 | name: json.din_rules[n], 139 | hits: json.din_hits[n], 140 | inf: json.din_rules.map((el, i) => { 141 | return { 142 | name: el, 143 | flux: json.din_fluxs[n][i] 144 | }; 145 | }), 146 | outf: json.din_rules.map((el, i) => { 147 | return { 148 | name: el, 149 | flux: json.din_fluxs[i][n] 150 | } 151 | }) 152 | }; 153 | } 154 | obj.data = data; 155 | 156 | return obj; 157 | }) 158 | 159 | // init data to first dataset in series 160 | App.data = App.dataset[0].data; 161 | App.animation.setTotalTimesteps(App.dataset.length); 162 | App.draw(); 163 | }; 164 | 165 | App.resetData = function(dataset, csv) { 166 | // remove all children of svg 167 | App.panels.forceDirected.simulation.stop(); 168 | App.panels.forceDirected.svg.selectAll('*').remove(); 169 | App.panels.forceDirected.tip.remove(); 170 | 171 | // remove line graphs 172 | d3.selectAll('.row').selectAll('*').remove(); 173 | 174 | if (csv) { 175 | App.phenotype = new Phenotype({data: csv}); 176 | // App.phenotype.resetCSV(csv); 177 | } 178 | App.handleData(dataset); 179 | }; 180 | 181 | function initSliders() { 182 | // set up a time slider 183 | if (App.dataset.length > 1) { 184 | App.timeSlider = new Slider( { 185 | title: 'Time', 186 | domain: [ 0, App.dataset.length-1 ], 187 | left: -300 188 | } ); 189 | 190 | App.timeSlider.onDrag = function(x) { 191 | var t = Math.round(this.value); 192 | if (t != App.item) { 193 | if (App.animation) { 194 | App.animation.isPlaying = false; 195 | d3.select('.ppIcon').classed('paused', false); 196 | } 197 | App.item = t; 198 | var tw = App.dataset[t].timeWindow.map(n => Number(n.toFixed(2))); 199 | this.setTitle( 'Time: ' + tw[0] + '-' + tw[1]); 200 | App.data = App.dataset[t].data; 201 | App.updateTimestep(); 202 | } 203 | } 204 | App.timeSlider.onDragEnd = function() { 205 | App.animation.currentTime = Math.round(this.value); 206 | 207 | App.panels.forceDirected.simulation 208 | .alpha(0.3) 209 | .restart(); 210 | } 211 | 212 | App.animation.attachToSlider(App.timeSlider); 213 | // append slider to force directed 214 | } 215 | 216 | App.updateTimestep = function() { 217 | App.panels.forceDirected.updateData(App.data); 218 | App.panels.topVis.drawMarkers(); 219 | App.phenotype.drawMarkers(); 220 | App.panels.bottomVis.drawMarkers(); 221 | App.infSlider.setDomain(infDomain()); 222 | } 223 | 224 | // set up an influence slider 225 | // get min of max inf 226 | function infDomain() { 227 | var data = App.panels.forceDirected.filteredData; 228 | var maxs = Object.keys(data).map(k => { 229 | var infMax = d3.max(data[k].inf, d => Math.abs(d.flux)) || 0; 230 | var outfMax = d3.max(data[k].outf, d => Math.abs(d.flux)) || 0; 231 | return Math.max(infMax, outfMax); 232 | }); 233 | return [d3.min(maxs), App.panels.forceDirected.maxInfl]; 234 | } 235 | App.infSlider = new Slider( { 236 | title: 'Influence > ' + App.panels.forceDirected.threshold.toPrecision(3), 237 | domain: infDomain(), 238 | log: true, 239 | tabs: ['Clustering', 'Visibility'] 240 | }); 241 | 242 | // insert value into input thing 243 | document.getElementById('set-threshold').value = App.panels.forceDirected.threshold; 244 | 245 | App.infSlider.setPosition( App.panels.forceDirected.threshold ); 246 | App.infSlider.onDrag = function(x, evt) { 247 | var inf = this.value; 248 | this.setTitle('Influence > ' + inf.toPrecision(3)); 249 | 250 | if (this.activeTab == 1) { 251 | inf === this.domain[0] ? App.panels.forceDirected.visThreshold = 0 : App.panels.forceDirected.visThreshold = inf; 252 | App.panels.forceDirected.updateEdgeVisibility(); 253 | } 254 | else { 255 | App.panels.forceDirected.threshold = inf; 256 | App.panels.forceDirected.defineClusters(inf); 257 | App.panels.forceDirected.drawGraph(); 258 | App.panels.topVis.drawMarkers(); 259 | App.panels.bottomVis.drawMarkers(); 260 | 261 | // insert value into input thing 262 | document.getElementById('set-threshold').value = inf; 263 | } 264 | } 265 | App.infSlider.onTabClick = function(x) { 266 | var inf = this.value; 267 | this.setTitle('Influence > ' + inf.toPrecision(3)); 268 | } 269 | } 270 | 271 | // creating SVGs in layout 272 | function createSVGs() { 273 | for(key in App.panels) { 274 | if (!App.panels[key].svg) { 275 | // create svg 276 | App.panels[key].svg = d3.select("#" + key + "Div") 277 | .append("svg") 278 | .attr("class", key + "SVG") 279 | .attr("width", "100%") 280 | .attr("height", "100%"); 281 | } 282 | } 283 | 284 | getDimSVGs(); 285 | } 286 | 287 | // getting the size of the elements in the client window size 288 | function getDimSVGs() { 289 | for(key in App.panels) { 290 | if (App.panels[key].svg) { 291 | // create svg 292 | var rect = App.panels[key].svg.node().getBoundingClientRect(); 293 | App.panels[key].width = rect.width; 294 | App.panels[key].height = rect.height; 295 | } 296 | } 297 | } 298 | 299 | })(); 300 | -------------------------------------------------------------------------------- /src/js/paintingManager.js: -------------------------------------------------------------------------------- 1 | const PaintingManager = function(graph) { 2 | let self = { 3 | inPaintingMode: true, 4 | overrideExistingClusters: true, 5 | 6 | isPaintingCluster: false, 7 | currentPaintingCluster: -1, 8 | paintedClusters: {}, 9 | 10 | paintingColors: d3.schemeCategory20 11 | }; 12 | 13 | function startPaintingNewCluster(clusterNumber) { 14 | self.isPaintingCluster = true; 15 | 16 | // get rid of any empty clusters 17 | self.paintedClusters = _.pickBy(self.paintedClusters, function(l) { 18 | return l.length > 0; 19 | }); 20 | 21 | if (isNaN(clusterNumber)) { 22 | self.currentPaintingCluster = getColor(Object.keys(self.paintedClusters).length); 23 | 24 | } 25 | else { 26 | self.currentPaintingCluster = getColor(clusterNumber); 27 | } 28 | 29 | if (!self.paintedClusters[self.currentPaintingCluster]) { 30 | self.paintedClusters[self.currentPaintingCluster] = []; 31 | } 32 | } 33 | 34 | function addNodeToPaintingCluster(node) { 35 | if (self.isPaintingCluster) { 36 | if (node.isPainted && node.paintedCluster === self.currentPaintingCluster) { 37 | // if it is being painted again with the same color, remove it from this clusterNumber 38 | _.remove(self.paintedClusters[node.paintedCluster], function(n) { 39 | return n.name === node.name; 40 | }); 41 | 42 | node.isPainted = false; 43 | node.paintedCluster = undefined; 44 | } else { 45 | if (node.paintedCluster !== undefined) { 46 | _.remove(self.paintedClusters[node.paintedCluster], function(n) { 47 | return n.name === node.name; 48 | }); 49 | } 50 | node.paintedCluster = self.currentPaintingCluster; 51 | node.isPainted = true; 52 | 53 | self.paintedClusters[self.currentPaintingCluster].push(node); 54 | } 55 | 56 | graph.defineClusters(); 57 | graph.drawGraph(); 58 | } 59 | } 60 | 61 | function stopPaintingCluster() { 62 | self.isPaintingCluster = false; 63 | } 64 | 65 | function unPaintAllNodes() { 66 | _.forEach(self.paintedClusters, function (cluster, i) { 67 | _.forEach(cluster, function(node) { 68 | delete node.paintedCluster; 69 | delete node.isPainted; 70 | }); 71 | }); 72 | 73 | self.currentPaintingCluster = -1; 74 | 75 | self.paintedClusters = []; 76 | graph.defineClusters(); 77 | graph.drawGraph(); 78 | 79 | if (self.isPaintingCluster) { 80 | startPaintingNewCluster(); 81 | } 82 | } 83 | 84 | function getColor(index) { 85 | return self.paintingColors[index]; 86 | } 87 | 88 | /* ========================= GETTERS && SETTERS =========================== */ 89 | function setPaintingMode(isPainting) { 90 | self.inPaintingMode = isPainting; 91 | } 92 | 93 | function isInPaintingMode() { 94 | return self.inPaintingMode; 95 | } 96 | 97 | function isPaintingCluster() { 98 | return self.isPaintingCluster; 99 | } 100 | 101 | function setOverrideExistingClusters(override) { 102 | self.overrideExistingClusters = override; 103 | } 104 | 105 | function isOverridingExistingClusters() { 106 | return self.overrideExistingClusters; 107 | } 108 | 109 | function getCurrentPaintingCluster() { 110 | return self.currentPaintingCluster; 111 | } 112 | 113 | function getPaintedClusters() { 114 | return _.map(Object.keys(self.paintedClusters), function(color) { 115 | return self.paintedClusters[color]; 116 | }); 117 | } 118 | 119 | function setPaintedClusters(clusters) { 120 | self.paintedClusters = {}; 121 | 122 | clusters.forEach(node => { 123 | self.paintedClusters[node.paintedCluster] = self.paintedClusters[node.paintedCluster] || []; 124 | self.paintedClusters[node.paintedCluster].push(node); 125 | }); 126 | } 127 | 128 | return { 129 | startPaintingNewCluster: startPaintingNewCluster, 130 | addNodeToPaintingCluster: addNodeToPaintingCluster, 131 | stopPaintingCluster: stopPaintingCluster, 132 | unPaintAllNodes: unPaintAllNodes, 133 | // setters/getters 134 | setPaintingMode: setPaintingMode, 135 | isInPaintingMode: isInPaintingMode, 136 | 137 | isPaintingCluster: isPaintingCluster, 138 | 139 | isOverridingExistingClusters: isOverridingExistingClusters, 140 | setOverrideExistingClusters: setOverrideExistingClusters, 141 | 142 | getCurrentPaintingCluster: getCurrentPaintingCluster, 143 | 144 | getPaintedClusters: getPaintedClusters, 145 | setPaintedClusters: setPaintedClusters 146 | }; 147 | }; 148 | -------------------------------------------------------------------------------- /src/js/phenotype.js: -------------------------------------------------------------------------------- 1 | function Phenotype(arg) { 2 | 3 | this.container = d3.select('#phenoVis'); 4 | var svg = this.container.append('svg'); 5 | 6 | var margin = {top: 5, left: 50, bottom: 20, right: 20}; 7 | var width = 280; 8 | var height = 200; 9 | 10 | var domain = {}; 11 | var xAxis = svg.append('g'); 12 | var yAxis = svg.append('g'); 13 | var fx = d3.scaleLinear() 14 | .domain([0, 1]) 15 | .range([height - margin.bottom, margin.top]); 16 | 17 | var axisHelper = svg.append('g'); 18 | axisHelper.append('line') 19 | .attr('x1', margin.left) 20 | .attr('x2', margin.left) 21 | .attr('y1', margin.top) 22 | .attr('stroke','black') 23 | .style("stroke-dasharray", "2, 2") 24 | .style('display','none'); 25 | 26 | axisHelper.append('text') 27 | .attr('fill','black'); 28 | 29 | svg 30 | .on('mouseover', () => { axisHelper.raise() 31 | .style('display','block'); }) 32 | .on('mousemove', mousemove) 33 | .on('mouseout', mouseout); 34 | 35 | this.resize = function() { 36 | var w = this.container.node().getBoundingClientRect().width - margin.right; 37 | var h = this.container.node().getBoundingClientRect().height; 38 | 39 | var aspect = w / h; 40 | var vw = 280; 41 | var vh = vw / aspect; 42 | 43 | width = vw; 44 | height = vh; 45 | 46 | svg 47 | .style("font-size", "12px") 48 | .attr('width', w) 49 | .attr('height', h) 50 | .attr("viewBox", "0 0 " + vw + " " + vh) 51 | 52 | axisHelper 53 | .select('line') 54 | .attr('y2', vh - margin.bottom); 55 | 56 | if (csv) { 57 | drawAxes(); 58 | this.updateDomain(); 59 | } 60 | } 61 | this.resize(); 62 | 63 | var csv = null; 64 | var categories = null; 65 | var data = null; 66 | 67 | function drawAxes() { 68 | categories = csv.columns.filter(d => d !== '[T]'); 69 | var values = [].concat.apply([], categories.map(d => data[d])); 70 | domain = [0, App.dataset.length - 1]; 71 | var range = d3.extent(values, d => +d); 72 | 73 | fx 74 | .domain(range) 75 | .range([height - margin.bottom, margin.top]); 76 | 77 | xAxis.attr('transform', 'translate(0,' + (height - margin.bottom) + ')') 78 | .call(d3.axisBottom( 79 | d3.scaleLinear() 80 | .domain(domain) 81 | .range([margin.left, width - 1]) 82 | ) 83 | .tickFormat(d => { 84 | d = Math.floor(d); 85 | var data = App.dataset[d]; 86 | if (data && data.timeWindow && data.timeWindow[0]) { 87 | return Number(data.timeWindow[0].toFixed(1)); 88 | } 89 | return d; 90 | }) 91 | ) 92 | .select('path') 93 | .attr('stroke', 'none'); 94 | 95 | yAxis.attr('transform', 'translate('+ margin.left + ',0)') 96 | .call(d3.axisLeft(fx).ticks(2)) 97 | .select('path') 98 | .attr('stroke', 'none'); 99 | } 100 | 101 | this.drawMarkers = function() { 102 | if (csv) { 103 | var item = App.item || 0; 104 | domain = this.x ? this.x.domain() : [0, csv.length - 1]; 105 | 106 | svg.select('.axis-current').remove(); 107 | if (item >= domain[0] && item <= domain[1]) { 108 | 109 | var scale = d3.scaleLinear() 110 | .domain(domain) 111 | .range([margin.left, width - 1]) 112 | .clamp(true); 113 | 114 | svg.append('line') 115 | .attr('class', 'axis-current') 116 | .attr('stroke','grey') 117 | .attr('pointer-events','none') 118 | .style("stroke-dasharray", "2, 2") 119 | .attr('y1', margin.top) 120 | .attr('y2', height - margin.bottom) 121 | .attr('transform', 'translate(' + scale(item) + ',0)'); 122 | } 123 | } 124 | } 125 | 126 | this.updateDomain = function(brush) { 127 | var domain = brush || [0, App.dataset.length - 1]; 128 | 129 | this.x = d3.scaleLinear() 130 | .domain(domain) 131 | .range([margin.left, width - 1]); 132 | xAxis.call( 133 | d3.axisBottom(this.x) 134 | .tickFormat(d => { 135 | d = Math.floor(d); 136 | var data = App.dataset[d]; 137 | if (data && data.timeWindow && data.timeWindow[0]) { 138 | return Number(data.timeWindow[0].toFixed(1)); 139 | } 140 | return d; 141 | }) 142 | ) 143 | 144 | if (!brush) { 145 | var line = d3.line() 146 | .curve(d3.curveCatmullRom) 147 | .x((d, i) => i * (width - margin.left - 1) / (domain[1] - domain[0]) + margin.left) 148 | .y(d => fx(d)); 149 | 150 | svg.selectAll('.category') 151 | .attr('d', (d, i) => { 152 | var column = categories[i]; 153 | return line(data[column].slice(domain[0], domain[1]+1)); 154 | }); 155 | } 156 | else { 157 | var scaledDomain = [ 158 | App.dataset[domain[0]].timeWindow[0], 159 | App.dataset[domain[1]].timeWindow[1] 160 | ]; 161 | 162 | var startIndex = data['[T]'].findIndex(data => scaledDomain[0] <= data); 163 | var endIndex = data['[T]'].findIndex(data => scaledDomain[1] <= data); 164 | 165 | if (startIndex < 0) { startIndex = 0; } 166 | if (endIndex < 0) { endIndex = csv.length - 1; } 167 | 168 | var scale = d3.scaleLinear() 169 | .domain([0, endIndex - startIndex]) 170 | .range([margin.left, width - 1]); 171 | 172 | var line = d3.line() 173 | .curve(d3.curveCatmullRom) 174 | .x((d, i) => scale(i)) 175 | .y(d => fx(d)); 176 | 177 | svg.selectAll('.category') 178 | .attr('d', (d, i) => { 179 | var column = categories[i]; 180 | return line(data[column].slice(startIndex, endIndex + 1)); 181 | }); 182 | } 183 | } 184 | 185 | this.init = function() { 186 | data = {}; 187 | 188 | csv.columns.forEach(column => data[column] = []); 189 | 190 | csv.forEach(row => { 191 | for (var entry in row) { 192 | data[entry].push(row[entry]); 193 | } 194 | }) 195 | 196 | // calculate axes 197 | drawAxes(); 198 | 199 | // draw paths 200 | var line = d3.line() 201 | .curve(d3.curveCatmullRom) 202 | .x((d, i) => i * (width - margin.left - 1) / (csv.length - 1) + margin.left) 203 | .y(d => fx(d)); 204 | 205 | categories.forEach((column, i) => { 206 | svg.append('path') 207 | .attr('class', 'category') 208 | .attr('fill', 'none') 209 | .style('stroke', d3.schemeCategory10[i]) 210 | .style('stroke-width', 0.5) 211 | .attr('d', line(data[column])); 212 | }); 213 | 214 | this.updateDomain(); 215 | } 216 | 217 | if (arg.path) { 218 | d3.csv(arg.path, (callback) => { 219 | csv = callback; 220 | if (!csv) { 221 | console.log('FILE ERROR: could not find ' + path); 222 | return; 223 | } 224 | 225 | this.init(); 226 | }); 227 | } 228 | else if (arg.data) { 229 | csv = arg.data; 230 | this.init(); 231 | } 232 | 233 | function mousemove() { 234 | if (!csv) { return; } 235 | var rect = svg.node().getBoundingClientRect(); 236 | var svgWidth = rect.width; 237 | var svgX = d3.event.x - rect.left; 238 | var graphOffset = margin.left * svgWidth/280; 239 | var diff = Math.min(this.width + margin.right - graphOffset -this.width/4 - 7, 0); 240 | 241 | var convertX = d3.scaleLinear() 242 | .domain([graphOffset, svgWidth]) 243 | .range(domain); 244 | 245 | var scale = d3.scaleLinear() 246 | .domain([graphOffset, svgWidth]) 247 | .range([0, 280 - margin.left]) 248 | .clamp(true); 249 | 250 | var i = Math.floor(convertX(svgX)); 251 | if (App.dataset[i]) { 252 | var t = App.dataset[i].timeWindow[0]; 253 | axisHelper 254 | .select('text') 255 | .text('t=' + t.toFixed(2)) 256 | .attr('transform',() => { 257 | var y = margin.top + 10; 258 | var x = scale(svgX) + 2; 259 | return 'translate(' + x + ',' + y + ')'; 260 | }); 261 | } 262 | 263 | axisHelper 264 | .select('line') 265 | .attr('transform','translate('+ scale(svgX) +',0)') 266 | .style('display','block'); 267 | 268 | } 269 | 270 | function mouseout() { 271 | axisHelper.style('display','none'); 272 | } 273 | } -------------------------------------------------------------------------------- /src/js/sliderUI.js: -------------------------------------------------------------------------------- 1 | function Slider(options) { 2 | 3 | this.svg = App.panels.forceDirected.svg.append('g'); 4 | var title = (options && options.title) ? options.title : '', 5 | tabs = options && options.tabs; 6 | 7 | this.color = (options && options.color) ? options.color : '#eee'; 8 | this.domain = (options && options.domain) ? options.domain : [0,1]; 9 | this.top = (options && options.top) ? options.top : -70, 10 | this.left = (options && options.left) ? options.left : 0; 11 | 12 | var log = this.log = (options && options.log === true); 13 | var width = this.width = 300; 14 | var height = this.height = 80; 15 | 16 | this.resize(); 17 | 18 | var self = this; 19 | var drag = d3.drag() 20 | .on('drag', function() { 21 | if (d3.event.dx === 0) { return; } 22 | 23 | var x = d3.event.x - 5; 24 | if (x < 0) { 25 | x = 0; 26 | } 27 | else if (x > width - 20) { 28 | x = width - 20; 29 | } 30 | d3.select(this).attr('x', x); 31 | 32 | // get/set value 33 | self.value = self.scale.copy().invert(x + 10); 34 | 35 | self.onDrag(x, d3.event); 36 | 37 | }) 38 | .on('end', function() { 39 | self.onDragEnd(self.value, d3.event); 40 | }); 41 | 42 | this.scale = (log ? d3.scaleLog() : d3.scaleLinear()) 43 | .range([10, width-10]) 44 | .domain(this.domain) 45 | .clamp(true); 46 | 47 | this.axis = d3.axisBottom() 48 | .scale(this.scale) 49 | .ticks(4) 50 | .tickSize(8); 51 | 52 | if (!log) { 53 | this.axis.tickFormat(d => { 54 | d = Math.floor(d); 55 | var data = App.dataset[d]; 56 | if (data && data.timeWindow && data.timeWindow[0]) { 57 | return Number(data.timeWindow[0].toFixed(1)); 58 | } 59 | return d; 60 | }); 61 | } 62 | 63 | this.svg.style("font-size", '13px'); 64 | 65 | this.svg.append('g') 66 | .attr('class','axis') 67 | .attr('transform','translate(0,35)') 68 | .call(this.axis); 69 | 70 | this.svg.select('.axis path') 71 | .attr('stroke-width',2) 72 | .attr('stroke',this.color); 73 | this.svg.selectAll('.axis line') 74 | .attr('stroke-width',2) 75 | .attr('stroke',this.color); 76 | this.svg.selectAll('.axis text') 77 | .attr('fill',this.color); 78 | 79 | this.svg.append('g') 80 | .attr('transform','translate(5,25)') 81 | .append('rect') 82 | .attr('class','slider') 83 | .attr('stroke','#444') 84 | .style('pointer-events','all') 85 | .attr('rx',2) 86 | .attr('ry',2) 87 | .attr('fill','#bbb') 88 | .attr('width',10) 89 | .attr('height',16) 90 | .call(drag); 91 | 92 | this.svg.append('text') 93 | .attr('class','title') 94 | .attr('pointer-events','none') 95 | .attr('text-anchor','middle') 96 | .attr('fill',this.color) 97 | .attr('text-anchor','start') 98 | .style('font-weight','bold') 99 | .attr('x',8) 100 | .attr('y',tabs ? 0 : 15) 101 | .text(title); 102 | 103 | if (tabs) { 104 | this.tabs = tabs.map((label, i) => { 105 | let tab = this.svg.append('text') 106 | .attr('text-anchor','start') 107 | .attr('x',8) 108 | .attr('y', 17) 109 | .attr('class','slider-tab') 110 | .style('cursor','pointer') 111 | .attr('fill',this.color) 112 | .text(label); 113 | 114 | tab.on('click', () => { 115 | this.activeTab = this.activeTab || 0; 116 | // store previous tab's position 117 | this.tabs[this.activeTab] 118 | .attr('position', this.svg.select('.slider').attr('x')); 119 | 120 | this.tabs.forEach((t, j) => { 121 | t.classed('active', i == j); 122 | }); 123 | this.activeTab = i; 124 | 125 | // retrieve new tab's position 126 | var x = tab.attr('position') || 0; 127 | this.setPosition( x , true); 128 | 129 | // perform click event 130 | this.value = this.scale.copy().invert(x + 10); 131 | this.onTabClick(this.value); 132 | }) 133 | 134 | return tab; 135 | }); 136 | this.activeTab = 0; 137 | this.tabs[0] 138 | .classed('active',true); 139 | this.resizeTabs(); 140 | } 141 | 142 | }; 143 | 144 | Slider.prototype.setPosition = function(x, absolute) { 145 | x = absolute ? x : this.scale(x) - 10; 146 | this.svg.select('.slider') 147 | .attr('x', x); 148 | } 149 | 150 | Slider.prototype.setTitle = function(title) { 151 | this.svg.select('.title') 152 | .text(title); 153 | } 154 | 155 | Slider.prototype.setDomain = function(arr) { 156 | this.domain = arr; 157 | this.scale.domain(this.domain); 158 | this.axis.scale = this.scale; 159 | this.svg.select('.axis') 160 | .call(this.axis); 161 | 162 | this.svg.selectAll('.axis line') 163 | .attr('stroke-width',2) 164 | .attr('stroke',this.color); 165 | this.svg.selectAll('.axis text') 166 | .attr('fill',this.color); 167 | } 168 | 169 | Slider.prototype.resize = function() { 170 | var dx = this.left < 0 ? App.panels.forceDirected.width + this.left-5 : this.left+5, 171 | dy = this.top < 0 ? App.panels.forceDirected.height + this.top: this.top; 172 | this.svg.attr('transform','translate('+dx+','+dy+')'); 173 | this.resizeTabs(); 174 | } 175 | 176 | Slider.prototype.resizeTabs = function() { 177 | if (this.tabs) { 178 | this.tabs.forEach((tab, i) => { 179 | if (i > 0) { 180 | let prevTab = this.tabs[i-1].node().getBBox(); 181 | tab.attr('x', prevTab.x + prevTab.width + 10); 182 | } 183 | }) 184 | } 185 | } 186 | 187 | /* event handling */ 188 | Slider.prototype.onTabClick = function(x) { 189 | // console.log('tab', x) 190 | } 191 | 192 | Slider.prototype.onDrag = function(x, evt) { 193 | // console.log('dragging',x, evt); 194 | } 195 | 196 | Slider.prototype.onDragEnd = function(x, evt) { 197 | // console.log('drag end', x, evt); 198 | } 199 | 200 | --------------------------------------------------------------------------------