├── .gitattributes ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md └── workflows │ ├── lint.yaml │ ├── test-coverage.yaml │ └── tests.yaml ├── .gitignore ├── LICENSE ├── README.md ├── RELEASING.md ├── assets └── banner.png ├── pyproject.toml └── pytissueoptics ├── __init__.py ├── __main__.py ├── examples ├── __init__.py ├── benchmarks │ ├── cube60.py │ ├── cubesph60b.py │ ├── env.py │ ├── skinvessel.py │ └── sphshells.py ├── rayscattering │ ├── env.py │ ├── ex01.py │ ├── ex02.py │ ├── ex03.py │ ├── ex04.py │ ├── ex05.py │ └── ex06.py └── scene │ ├── droid.obj │ ├── env.py │ ├── example0.py │ ├── example1.py │ ├── example2.py │ ├── example3.py │ └── example4.py ├── rayscattering ├── __init__.py ├── display │ ├── __init__.py │ ├── profiles │ │ ├── __init__.py │ │ ├── profile1D.py │ │ └── profileFactory.py │ ├── utils │ │ ├── __init__.py │ │ └── direction.py │ ├── viewer.py │ └── views │ │ ├── __init__.py │ │ ├── defaultViews.py │ │ ├── view2D.py │ │ └── viewFactory.py ├── energyLogging │ ├── __init__.py │ ├── energyLogger.py │ ├── energyType.py │ ├── pointCloud.py │ └── pointCloudFactory.py ├── fresnel.py ├── materials │ ├── __init__.py │ └── scatteringMaterial.py ├── opencl │ ├── CLPhotons.py │ ├── CLProgram.py │ ├── CLScene.py │ ├── __init__.py │ ├── buffers │ │ ├── CLObject.py │ │ ├── __init__.py │ │ ├── dataPointCL.py │ │ ├── materialCL.py │ │ ├── photonCL.py │ │ ├── seedCL.py │ │ ├── solidCL.py │ │ ├── solidCandidateCL.py │ │ ├── surfaceCL.py │ │ ├── triangleCL.py │ │ └── vertexCL.py │ ├── config │ │ ├── CLConfig.py │ │ ├── IPPTable.py │ │ └── __init__.py │ ├── src │ │ ├── fresnel.c │ │ ├── intersection.c │ │ ├── propagation.c │ │ ├── random.c │ │ ├── scatteringMaterial.c │ │ └── vectorOperators.c │ └── utils │ │ ├── CLKeyLog.py │ │ ├── CLParameters.py │ │ ├── __init__.py │ │ ├── batchTiming.py │ │ └── optimalWorkUnits.py ├── photon.py ├── samples │ ├── __init__.py │ ├── infiniteTissue.py │ └── phantomTissue.py ├── scatteringScene.py ├── source.py ├── statistics │ ├── __init__.py │ └── statistics.py ├── tests │ ├── __init__.py │ ├── display │ │ ├── __init__.py │ │ ├── testImages │ │ │ ├── profile1D.png │ │ │ └── viewXPOS_uYPOS_vZNEG.png │ │ ├── testProfile1D.py │ │ ├── testProfileFactory.py │ │ ├── testView2D.py │ │ ├── testViewFactory.py │ │ └── testViewer.py │ ├── energyLogging │ │ ├── __init__.py │ │ ├── testEnergyLogger.py │ │ ├── testPointCloudFactory.py │ │ └── testPointcloud.py │ ├── materials │ │ ├── __init__.py │ │ └── testScatteringMaterial.py │ ├── opencl │ │ ├── __init__.py │ │ ├── config │ │ │ ├── __init__.py │ │ │ ├── testCLConfig.py │ │ │ └── testIPPTable.py │ │ ├── src │ │ │ ├── CLObjects.py │ │ │ ├── __init__.py │ │ │ ├── testCLFresnel.py │ │ │ ├── testCLIntersection.py │ │ │ ├── testCLPhoton.py │ │ │ ├── testCLRandom.py │ │ │ ├── testCLScatteringMaterial.py │ │ │ ├── testCLSmoothing.py │ │ │ └── testCLVectorOperators.py │ │ ├── testCLKeyLog.py │ │ └── testCLPhotons.py │ ├── statistics │ │ ├── __init__.py │ │ └── testStats.py │ ├── testFresnel.py │ ├── testPhoton.py │ ├── testScatteringScene.py │ ├── testSource.py │ ├── testSourceAccelerated.py │ └── testUtils.py └── utils.py ├── scene ├── __init__.py ├── geometry │ ├── __init__.py │ ├── bbox.py │ ├── polygon.py │ ├── primitives.py │ ├── quad.py │ ├── rotation.py │ ├── surfaceCollection.py │ ├── triangle.py │ ├── utils.py │ ├── vector.py │ └── vertex.py ├── intersection │ ├── __init__.py │ ├── bboxIntersect.py │ ├── intersectionFinder.py │ ├── mollerTrumboreIntersect.py │ ├── ray.py │ └── raySource.py ├── loader │ ├── __init__.py │ ├── loadSolid.py │ ├── loader.py │ └── parsers │ │ ├── __init__.py │ │ ├── obj │ │ ├── __init__.py │ │ └── objParser.py │ │ ├── parsedObject.py │ │ ├── parsedSurface.py │ │ └── parser.py ├── logger │ ├── __init__.py │ ├── listArrayContainer.py │ └── logger.py ├── material.py ├── scene │ ├── __init__.py │ └── scene.py ├── shader │ ├── __init__.py │ └── utils.py ├── solids │ ├── __init__.py │ ├── circle.py │ ├── cone.py │ ├── cube.py │ ├── cuboid.py │ ├── cylinder.py │ ├── ellipsoid.py │ ├── lens.py │ ├── rectangle.py │ ├── solid.py │ ├── solidFactory.py │ ├── sphere.py │ └── stack │ │ ├── __init__.py │ │ ├── cuboidStacker.py │ │ └── stackResult.py ├── tests │ ├── __init__.py │ ├── geometry │ │ ├── __init__.py │ │ ├── testBoundingBox.py │ │ ├── testPolygon.py │ │ ├── testRotation.py │ │ ├── testSurfaceCollection.py │ │ ├── testTriangle.py │ │ ├── testUtils.py │ │ └── testVector.py │ ├── intersection │ │ ├── __init__.py │ │ ├── benchmarkIntersectionFinder.py │ │ ├── testBoundingBoxIntersect.py │ │ ├── testIntersectionFinder.py │ │ ├── testPolygonIntersect.py │ │ ├── testRay.py │ │ └── testUniformRaySource.py │ ├── loader │ │ ├── __init__.py │ │ ├── parsers │ │ │ ├── __init__.py │ │ │ ├── objFiles │ │ │ │ ├── test.wrongExtension │ │ │ │ ├── testCubeQuads.obj │ │ │ │ ├── testCubeQuadsNoObject.obj │ │ │ │ ├── testCubeQuadsNoObjectName.obj │ │ │ │ ├── testCubeQuadsNoSurface.obj │ │ │ │ ├── testCubeQuadsNoSurfaceName.obj │ │ │ │ ├── testCubeQuadsRepeatingSurface.obj │ │ │ │ ├── testCubeQuadsTexture.obj │ │ │ │ ├── testCubeTriangles.obj │ │ │ │ └── testCubeTrianglesMulti.obj │ │ │ └── testOBJParser.py │ │ ├── testLoadSolid.py │ │ └── testLoader.py │ ├── logger │ │ ├── __init__.py │ │ ├── testListArrayContainer.py │ │ └── testLogger.py │ ├── scene │ │ ├── __init__.py │ │ ├── benchmarkScenes.py │ │ └── testScene.py │ ├── shader │ │ ├── __init__.py │ │ └── testSmoothing.py │ ├── solids │ │ ├── __init__.py │ │ ├── testCircle.py │ │ ├── testCone.py │ │ ├── testCuboid.py │ │ ├── testCylinder.py │ │ ├── testEllipsoid.py │ │ ├── testRectangle.py │ │ ├── testSolid.py │ │ ├── testSolidGroup.py │ │ ├── testSphere.py │ │ └── testThickLens.py │ ├── tree │ │ ├── __init__.py │ │ ├── testSpacePartition.py │ │ └── treeConstructor │ │ │ ├── __init__.py │ │ │ └── binary │ │ │ ├── __init__.py │ │ │ ├── testNoSplitConstructor.py │ │ │ └── testSplitConstructor.py │ ├── utils │ │ ├── __init__.py │ │ └── testNoProgressBar.py │ └── viewer │ │ ├── __init__.py │ │ ├── testImages │ │ ├── images.png │ │ ├── logger_natural.png │ │ ├── scene_natural.png │ │ ├── solid_natural_front.png │ │ ├── solid_optics.png │ │ └── sphere_normals.png │ │ ├── testMayavi3DViewer.py │ │ └── testMayaviSolid.py ├── tree │ ├── __init__.py │ ├── node.py │ ├── spacePartition.py │ └── treeConstructor │ │ ├── __init__.py │ │ ├── binary │ │ ├── __init__.py │ │ ├── noSplitOneAxisConstructor.py │ │ ├── noSplitThreeAxesConstructor.py │ │ ├── sahSearchResult.py │ │ └── splitTreeAxesConstructor.py │ │ ├── splitNodeResult.py │ │ └── treeConstructor.py ├── utils │ ├── __init__.py │ └── progressBar.py └── viewer │ ├── __init__.py │ ├── abstract3DViewer.py │ ├── displayable.py │ ├── mayavi │ ├── __init__.py │ ├── mayavi3DViewer.py │ ├── mayaviNormals.py │ ├── mayaviSolid.py │ ├── mayaviTriangleMesh.py │ └── mayaviVolumeSlicer.py │ ├── null3DViewer.py │ ├── provider.py │ └── viewPoint.py └── testExamples.py /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/.gitattributes -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/.github/ISSUE_TEMPLATE/bug_report.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/feature_request.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/.github/ISSUE_TEMPLATE/feature_request.md -------------------------------------------------------------------------------- /.github/workflows/lint.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/.github/workflows/lint.yaml -------------------------------------------------------------------------------- /.github/workflows/test-coverage.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/.github/workflows/test-coverage.yaml -------------------------------------------------------------------------------- /.github/workflows/tests.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/.github/workflows/tests.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/README.md -------------------------------------------------------------------------------- /RELEASING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/RELEASING.md -------------------------------------------------------------------------------- /assets/banner.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/assets/banner.png -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pyproject.toml -------------------------------------------------------------------------------- /pytissueoptics/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/__main__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/__main__.py -------------------------------------------------------------------------------- /pytissueoptics/examples/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/examples/benchmarks/cube60.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/benchmarks/cube60.py -------------------------------------------------------------------------------- /pytissueoptics/examples/benchmarks/cubesph60b.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/benchmarks/cubesph60b.py -------------------------------------------------------------------------------- /pytissueoptics/examples/benchmarks/env.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/benchmarks/env.py -------------------------------------------------------------------------------- /pytissueoptics/examples/benchmarks/skinvessel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/benchmarks/skinvessel.py -------------------------------------------------------------------------------- /pytissueoptics/examples/benchmarks/sphshells.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/benchmarks/sphshells.py -------------------------------------------------------------------------------- /pytissueoptics/examples/rayscattering/env.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/rayscattering/env.py -------------------------------------------------------------------------------- /pytissueoptics/examples/rayscattering/ex01.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/rayscattering/ex01.py -------------------------------------------------------------------------------- /pytissueoptics/examples/rayscattering/ex02.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/rayscattering/ex02.py -------------------------------------------------------------------------------- /pytissueoptics/examples/rayscattering/ex03.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/rayscattering/ex03.py -------------------------------------------------------------------------------- /pytissueoptics/examples/rayscattering/ex04.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/rayscattering/ex04.py -------------------------------------------------------------------------------- /pytissueoptics/examples/rayscattering/ex05.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/rayscattering/ex05.py -------------------------------------------------------------------------------- /pytissueoptics/examples/rayscattering/ex06.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/rayscattering/ex06.py -------------------------------------------------------------------------------- /pytissueoptics/examples/scene/droid.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/scene/droid.obj -------------------------------------------------------------------------------- /pytissueoptics/examples/scene/env.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/scene/env.py -------------------------------------------------------------------------------- /pytissueoptics/examples/scene/example0.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/scene/example0.py -------------------------------------------------------------------------------- /pytissueoptics/examples/scene/example1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/scene/example1.py -------------------------------------------------------------------------------- /pytissueoptics/examples/scene/example2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/scene/example2.py -------------------------------------------------------------------------------- /pytissueoptics/examples/scene/example3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/scene/example3.py -------------------------------------------------------------------------------- /pytissueoptics/examples/scene/example4.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/examples/scene/example4.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/profiles/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/profiles/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/profiles/profile1D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/profiles/profile1D.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/profiles/profileFactory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/profiles/profileFactory.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/utils/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/utils/direction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/utils/direction.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/viewer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/viewer.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/views/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/views/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/views/defaultViews.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/views/defaultViews.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/views/view2D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/views/view2D.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/display/views/viewFactory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/display/views/viewFactory.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/energyLogging/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/energyLogging/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/energyLogging/energyLogger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/energyLogging/energyLogger.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/energyLogging/energyType.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/energyLogging/energyType.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/energyLogging/pointCloud.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/energyLogging/pointCloud.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/energyLogging/pointCloudFactory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/energyLogging/pointCloudFactory.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/fresnel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/fresnel.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/materials/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/materials/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/materials/scatteringMaterial.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/materials/scatteringMaterial.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/CLPhotons.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/CLPhotons.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/CLProgram.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/CLProgram.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/CLScene.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/CLScene.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/CLObject.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/CLObject.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/dataPointCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/dataPointCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/materialCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/materialCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/photonCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/photonCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/seedCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/seedCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/solidCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/solidCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/solidCandidateCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/solidCandidateCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/surfaceCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/surfaceCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/triangleCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/triangleCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/buffers/vertexCL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/buffers/vertexCL.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/config/CLConfig.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/config/CLConfig.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/config/IPPTable.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/config/IPPTable.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/config/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/src/fresnel.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/src/fresnel.c -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/src/intersection.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/src/intersection.c -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/src/propagation.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/src/propagation.c -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/src/random.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/src/random.c -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/src/scatteringMaterial.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/src/scatteringMaterial.c -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/src/vectorOperators.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/src/vectorOperators.c -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/utils/CLKeyLog.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/utils/CLKeyLog.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/utils/CLParameters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/utils/CLParameters.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/utils/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/utils/batchTiming.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/utils/batchTiming.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/opencl/utils/optimalWorkUnits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/opencl/utils/optimalWorkUnits.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/photon.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/photon.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/samples/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/samples/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/samples/infiniteTissue.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/samples/infiniteTissue.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/samples/phantomTissue.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/samples/phantomTissue.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/scatteringScene.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/scatteringScene.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/source.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/source.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/statistics/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/statistics/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/statistics/statistics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/statistics/statistics.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/__init__.py: -------------------------------------------------------------------------------- 1 | SHOW_VISUAL_TESTS = False 2 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/display/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/display/testImages/profile1D.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/display/testImages/profile1D.png -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/display/testImages/viewXPOS_uYPOS_vZNEG.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/display/testImages/viewXPOS_uYPOS_vZNEG.png -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/display/testProfile1D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/display/testProfile1D.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/display/testProfileFactory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/display/testProfileFactory.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/display/testView2D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/display/testView2D.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/display/testViewFactory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/display/testViewFactory.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/display/testViewer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/display/testViewer.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/energyLogging/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/energyLogging/testEnergyLogger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/energyLogging/testEnergyLogger.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/energyLogging/testPointCloudFactory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/energyLogging/testPointCloudFactory.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/energyLogging/testPointcloud.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/energyLogging/testPointcloud.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/materials/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/materials/testScatteringMaterial.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/materials/testScatteringMaterial.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/config/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/config/testCLConfig.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/config/testCLConfig.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/config/testIPPTable.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/config/testIPPTable.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/CLObjects.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/src/CLObjects.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/testCLFresnel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/src/testCLFresnel.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/testCLIntersection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/src/testCLIntersection.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/testCLPhoton.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/src/testCLPhoton.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/testCLRandom.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/src/testCLRandom.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/testCLScatteringMaterial.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/src/testCLScatteringMaterial.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/testCLSmoothing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/src/testCLSmoothing.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/src/testCLVectorOperators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/src/testCLVectorOperators.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/testCLKeyLog.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/testCLKeyLog.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/opencl/testCLPhotons.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/opencl/testCLPhotons.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/statistics/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/statistics/testStats.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/statistics/testStats.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/testFresnel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/testFresnel.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/testPhoton.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/testPhoton.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/testScatteringScene.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/testScatteringScene.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/testSource.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/testSource.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/testSourceAccelerated.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/testSourceAccelerated.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/tests/testUtils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/tests/testUtils.py -------------------------------------------------------------------------------- /pytissueoptics/rayscattering/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/rayscattering/utils.py -------------------------------------------------------------------------------- /pytissueoptics/scene/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/bbox.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/bbox.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/polygon.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/polygon.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/primitives.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/primitives.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/quad.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/quad.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/rotation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/rotation.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/surfaceCollection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/surfaceCollection.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/triangle.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/triangle.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/utils.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/vector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/vector.py -------------------------------------------------------------------------------- /pytissueoptics/scene/geometry/vertex.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/geometry/vertex.py -------------------------------------------------------------------------------- /pytissueoptics/scene/intersection/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/intersection/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/intersection/bboxIntersect.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/intersection/bboxIntersect.py -------------------------------------------------------------------------------- /pytissueoptics/scene/intersection/intersectionFinder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/intersection/intersectionFinder.py -------------------------------------------------------------------------------- /pytissueoptics/scene/intersection/mollerTrumboreIntersect.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/intersection/mollerTrumboreIntersect.py -------------------------------------------------------------------------------- /pytissueoptics/scene/intersection/ray.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/intersection/ray.py -------------------------------------------------------------------------------- /pytissueoptics/scene/intersection/raySource.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/intersection/raySource.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/loadSolid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/loadSolid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/loader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/loader.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/parsers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/parsers/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/parsers/obj/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/parsers/obj/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/parsers/obj/objParser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/parsers/obj/objParser.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/parsers/parsedObject.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/parsers/parsedObject.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/parsers/parsedSurface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/parsers/parsedSurface.py -------------------------------------------------------------------------------- /pytissueoptics/scene/loader/parsers/parser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/loader/parsers/parser.py -------------------------------------------------------------------------------- /pytissueoptics/scene/logger/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/logger/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/logger/listArrayContainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/logger/listArrayContainer.py -------------------------------------------------------------------------------- /pytissueoptics/scene/logger/logger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/logger/logger.py -------------------------------------------------------------------------------- /pytissueoptics/scene/material.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/material.py -------------------------------------------------------------------------------- /pytissueoptics/scene/scene/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/scene/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/scene/scene.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/scene/scene.py -------------------------------------------------------------------------------- /pytissueoptics/scene/shader/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/shader/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/shader/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/shader/utils.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/circle.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/circle.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/cone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/cone.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/cube.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/cube.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/cuboid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/cuboid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/cylinder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/cylinder.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/ellipsoid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/ellipsoid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/lens.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/lens.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/rectangle.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/rectangle.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/solid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/solid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/solidFactory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/solidFactory.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/sphere.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/sphere.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/stack/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/stack/cuboidStacker.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/stack/cuboidStacker.py -------------------------------------------------------------------------------- /pytissueoptics/scene/solids/stack/stackResult.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/solids/stack/stackResult.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/geometry/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/geometry/testBoundingBox.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/geometry/testBoundingBox.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/geometry/testPolygon.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/geometry/testPolygon.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/geometry/testRotation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/geometry/testRotation.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/geometry/testSurfaceCollection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/geometry/testSurfaceCollection.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/geometry/testTriangle.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/geometry/testTriangle.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/geometry/testUtils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/geometry/testUtils.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/geometry/testVector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/geometry/testVector.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/intersection/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/intersection/benchmarkIntersectionFinder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/intersection/benchmarkIntersectionFinder.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/intersection/testBoundingBoxIntersect.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/intersection/testBoundingBoxIntersect.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/intersection/testIntersectionFinder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/intersection/testIntersectionFinder.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/intersection/testPolygonIntersect.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/intersection/testPolygonIntersect.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/intersection/testRay.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/intersection/testRay.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/intersection/testUniformRaySource.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/intersection/testUniformRaySource.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/test.wrongExtension: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuads.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuads.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsNoObject.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsNoObject.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsNoObjectName.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsNoObjectName.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsNoSurface.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsNoSurface.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsNoSurfaceName.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsNoSurfaceName.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsRepeatingSurface.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsRepeatingSurface.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsTexture.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeQuadsTexture.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeTriangles.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeTriangles.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeTrianglesMulti.obj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/objFiles/testCubeTrianglesMulti.obj -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/parsers/testOBJParser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/parsers/testOBJParser.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/testLoadSolid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/testLoadSolid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/loader/testLoader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/loader/testLoader.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/logger/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/logger/testListArrayContainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/logger/testListArrayContainer.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/logger/testLogger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/logger/testLogger.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/scene/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/scene/benchmarkScenes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/scene/benchmarkScenes.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/scene/testScene.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/scene/testScene.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/shader/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/shader/testSmoothing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/shader/testSmoothing.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testCircle.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testCircle.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testCone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testCone.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testCuboid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testCuboid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testCylinder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testCylinder.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testEllipsoid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testEllipsoid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testRectangle.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testRectangle.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testSolid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testSolid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testSolidGroup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testSolidGroup.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testSphere.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testSphere.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/solids/testThickLens.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/solids/testThickLens.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/tree/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/tree/testSpacePartition.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/tree/testSpacePartition.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/tree/treeConstructor/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/tree/treeConstructor/binary/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/tree/treeConstructor/binary/testNoSplitConstructor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/tree/treeConstructor/binary/testNoSplitConstructor.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/tree/treeConstructor/binary/testSplitConstructor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/tree/treeConstructor/binary/testSplitConstructor.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/utils/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/utils/testNoProgressBar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/utils/testNoProgressBar.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/testImages/images.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/viewer/testImages/images.png -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/testImages/logger_natural.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/viewer/testImages/logger_natural.png -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/testImages/scene_natural.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/viewer/testImages/scene_natural.png -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/testImages/solid_natural_front.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/viewer/testImages/solid_natural_front.png -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/testImages/solid_optics.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/viewer/testImages/solid_optics.png -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/testImages/sphere_normals.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/viewer/testImages/sphere_normals.png -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/testMayavi3DViewer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/viewer/testMayavi3DViewer.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tests/viewer/testMayaviSolid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tests/viewer/testMayaviSolid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/node.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/node.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/spacePartition.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/spacePartition.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/treeConstructor/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/treeConstructor/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/treeConstructor/binary/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/treeConstructor/binary/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/treeConstructor/binary/noSplitOneAxisConstructor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/treeConstructor/binary/noSplitOneAxisConstructor.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/treeConstructor/binary/noSplitThreeAxesConstructor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/treeConstructor/binary/noSplitThreeAxesConstructor.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/treeConstructor/binary/sahSearchResult.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/treeConstructor/binary/sahSearchResult.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/treeConstructor/binary/splitTreeAxesConstructor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/treeConstructor/binary/splitTreeAxesConstructor.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/treeConstructor/splitNodeResult.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/treeConstructor/splitNodeResult.py -------------------------------------------------------------------------------- /pytissueoptics/scene/tree/treeConstructor/treeConstructor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/tree/treeConstructor/treeConstructor.py -------------------------------------------------------------------------------- /pytissueoptics/scene/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/utils/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/utils/progressBar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/utils/progressBar.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/abstract3DViewer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/abstract3DViewer.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/displayable.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/displayable.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/mayavi/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/mayavi/__init__.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/mayavi/mayavi3DViewer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/mayavi/mayavi3DViewer.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/mayavi/mayaviNormals.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/mayavi/mayaviNormals.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/mayavi/mayaviSolid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/mayavi/mayaviSolid.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/mayavi/mayaviTriangleMesh.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/mayavi/mayaviTriangleMesh.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/mayavi/mayaviVolumeSlicer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/mayavi/mayaviVolumeSlicer.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/null3DViewer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/null3DViewer.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/provider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/provider.py -------------------------------------------------------------------------------- /pytissueoptics/scene/viewer/viewPoint.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/scene/viewer/viewPoint.py -------------------------------------------------------------------------------- /pytissueoptics/testExamples.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DCC-Lab/PyTissueOptics/HEAD/pytissueoptics/testExamples.py --------------------------------------------------------------------------------