├── .devcontainer └── devcontainer.json ├── .gitattributes ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md └── workflows │ ├── docs.yml │ ├── docs_dead_links.yml │ ├── downstream_test.yml │ ├── full_test.yml │ ├── notebooks_test.yml │ ├── perf_test.yml │ └── python-publish.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .vscode └── settings.json ├── CITATION.cff ├── CLAUDE.md ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── Dependencies.md ├── License.txt ├── Makefile ├── README.md ├── conftest.py ├── docs ├── .gitignore ├── FM_FileSpecification.pdf ├── MIKE-IO-Icon-Pos-RGB.png ├── MIKE-IO-Logo-Pos-RGB.svg ├── _extensions │ ├── fontawesome │ │ ├── _extension.yml │ │ ├── assets │ │ │ ├── css │ │ │ │ ├── all.css │ │ │ │ └── latex-fontsize.css │ │ │ └── webfonts │ │ │ │ ├── FontAwesome6Brands-Regular-400.ttf │ │ │ │ ├── FontAwesome6Brands-Regular-400.woff2 │ │ │ │ ├── FontAwesome6Free-Regular-400.ttf │ │ │ │ ├── FontAwesome6Free-Regular-400.woff2 │ │ │ │ ├── FontAwesome6Free-Solid-900.ttf │ │ │ │ ├── FontAwesome6Free-Solid-900.woff2 │ │ │ │ ├── fa-brands-400.ttf │ │ │ │ ├── fa-brands-400.woff2 │ │ │ │ ├── fa-regular-400.ttf │ │ │ │ ├── fa-regular-400.woff2 │ │ │ │ ├── fa-solid-900.ttf │ │ │ │ ├── fa-solid-900.woff2 │ │ │ │ ├── fa-v4compatibility.ttf │ │ │ │ └── fa-v4compatibility.woff2 │ │ └── fontawesome.lua │ ├── interlinks │ │ ├── .gitignore │ │ ├── _extension.yml │ │ └── interlinks.lua │ └── machow │ │ └── interlinks │ │ ├── .gitignore │ │ ├── _extension.yml │ │ └── interlinks.lua ├── _inv │ ├── numpy_objects.json │ ├── pandas_objects.json │ ├── scipy_objects.json │ └── xarray_objects.json ├── _quarto.yml ├── _sidebar.yml ├── api │ └── _metadata.yml ├── data ├── design.qmd ├── dhi.ico ├── examples │ ├── Generic.qmd │ ├── Time-interpolation.qmd │ ├── dfs0 │ │ ├── cmems_insitu.qmd │ │ ├── index.qmd │ │ └── relative_time.qmd │ ├── dfs2 │ │ ├── bathy.qmd │ │ ├── gfs.qmd │ │ └── index.qmd │ ├── dfsu │ │ ├── index.qmd │ │ ├── merge_subdomains.qmd │ │ └── spatial_interpolation.qmd │ └── index.qmd ├── images ├── index.qmd ├── license.qmd └── user-guide │ ├── data-structures.md │ ├── dataarray.qmd │ ├── dataset.qmd │ ├── dfs0.qmd │ ├── dfs1.qmd │ ├── dfs2.qmd │ ├── dfsu.qmd │ ├── eum.qmd │ ├── generic.qmd │ ├── getting-started.qmd │ ├── mauna_loa_co2.dfs0 │ ├── mesh.qmd │ └── pfs.qmd ├── images ├── FakeLake.png ├── code.png ├── colab.png ├── deepnote.png ├── dfsu_grid_interp.png ├── dfsu_grid_interp_tiff.png ├── dfsu_grid_netcdf.png ├── dfsu_qgis.png ├── dfsu_qgis_contours.png ├── dfsu_ts.png ├── gfs.png ├── logo │ ├── AI │ │ ├── MIKE-IO-Icon-Neg-RGB.ai │ │ ├── MIKE-IO-Icon-Pos-RGB.ai │ │ ├── MIKE-IO-Logo-Neg-RGB.ai │ │ └── MIKE-IO-Logo-Pos-RGB.ai │ ├── EPS │ │ ├── MIKE-IO-Icon-Neg-RGB.eps │ │ ├── MIKE-IO-Icon-Pos-RGB.eps │ │ ├── MIKE-IO-Logo-Neg-RGB.eps │ │ └── MIKE-IO-Logo-Pos-RGB.eps │ ├── JPG │ │ ├── MIKE-IO-Icon-Pos-Blue-nomargin.jpg │ │ ├── MIKE-IO-Icon-Pos-Blue.jpg │ │ ├── MIKE-IO-Icon-Pos-RGB-nomargin.jpg │ │ ├── MIKE-IO-Icon-Pos-RGB.jpg │ │ ├── MIKE-IO-Logo-Pos-Blue-nomargin.jpg │ │ ├── MIKE-IO-Logo-Pos-Blue.jpg │ │ ├── MIKE-IO-Logo-Pos-RGB-nomargin.jpg │ │ └── MIKE-IO-Logo-Pos-RGB.jpg │ ├── PNG │ │ ├── MIKE-IO-Icon-Neg-RGB-nomargin.png │ │ ├── MIKE-IO-Icon-Neg-RGB.png │ │ ├── MIKE-IO-Icon-Pos-RGB-nomargin.png │ │ ├── MIKE-IO-Icon-Pos-RGB.png │ │ ├── MIKE-IO-Logo-Neg-RGB-nomargin.png │ │ ├── MIKE-IO-Logo-Neg-RGB.png │ │ ├── MIKE-IO-Logo-Neg-White-nomargin.png │ │ ├── MIKE-IO-Logo-Neg-White.png │ │ ├── MIKE-IO-Logo-Pos-Blue-nomargin.png │ │ ├── MIKE-IO-Logo-Pos-Blue.png │ │ ├── MIKE-IO-Logo-Pos-RGB-nomargin.png │ │ └── MIKE-IO-Logo-Pos-RGB.png │ └── SVG │ │ ├── MIKE-IO-Icon-Neg-RGB.svg │ │ ├── MIKE-IO-Icon-Pos-Blue.svg │ │ ├── MIKE-IO-Icon-Pos-RGB.svg │ │ ├── MIKE-IO-Logo-Neg-RGB.svg │ │ ├── MIKE-IO-Logo-Pos-Blue.svg │ │ └── MIKE-IO-Logo-Pos-RGB.svg ├── pfs.gif ├── sst_dfs2.png ├── wl_feet.png ├── xns11_geometry.png ├── youtube1.png └── youtube2.png ├── notebooks ├── DataArray - Arithmetic.ipynb ├── DataArray - Dfs123 plotting.ipynb ├── DataArray - Dfsu plotting.ipynb ├── DataArray - Masking.ipynb ├── Dataset - Add item.ipynb ├── Dataset - Concat, merge.ipynb ├── Dfs0 - Relative time.ipynb ├── Dfs0 - Timeseries.ipynb ├── Dfs1 - Read.ipynb ├── Dfs2 - Bathymetry.ipynb ├── Dfs2 - Boundary.ipynb ├── Dfs2 - Export to netcdf.ipynb ├── Dfs2 - Global Forecasting System.ipynb ├── Dfs2 - Import from Ascii.ipynb ├── Dfs2 - Slicing.ipynb ├── Dfs2 - Snow Compare.ipynb ├── Dfs2 - Various types.ipynb ├── Dfs3 - Basic.ipynb ├── Dfsu - 2D interpolation.ipynb ├── Dfsu - 3D sigma-z.ipynb ├── Dfsu - Distance to land.ipynb ├── Dfsu - Export to netcdf.ipynb ├── Dfsu - Export to shapefile.ipynb ├── Dfsu - Extract Track.ipynb ├── Dfsu - Merge subdomain files.ipynb ├── Dfsu - Read.ipynb ├── Dfsu - Spectral data other formats.ipynb ├── Dfsu - Spectral data.ipynb ├── Dfsu - Speed and direction.ipynb ├── Dfsu - Vertical Profile.ipynb ├── Dfsu and Mesh - Plotting.ipynb ├── Generic.ipynb ├── Mesh.ipynb ├── PFS.ipynb ├── README.md ├── Time interpolation.ipynb └── download_jupyter.png ├── pyproject.toml ├── pytest.ini ├── requirements.txt ├── requirements_min.txt ├── scripts ├── concat.py └── readme.md ├── src └── mikeio │ ├── __init__.py │ ├── _interpolation.py │ ├── _spectral.py │ ├── _time.py │ ├── _track.py │ ├── dataset │ ├── __init__.py │ ├── _data_plot.py │ ├── _dataarray.py │ └── _dataset.py │ ├── dfs │ ├── __init__.py │ ├── _dfs.py │ ├── _dfs0.py │ ├── _dfs1.py │ ├── _dfs2.py │ └── _dfs3.py │ ├── dfsu │ ├── __init__.py │ ├── _dfsu.py │ ├── _factory.py │ ├── _layered.py │ ├── _mesh.py │ ├── _spectral.py │ └── _topology.py │ ├── eum │ ├── __init__.py │ └── _eum.py │ ├── exceptions.py │ ├── generic.py │ ├── pfs │ ├── __init__.py │ ├── _pfsdocument.py │ └── _pfssection.py │ ├── py.typed │ └── spatial │ ├── _FM_geometry.py │ ├── _FM_geometry_layered.py │ ├── _FM_geometry_spectral.py │ ├── _FM_plot.py │ ├── __init__.py │ ├── _distance.py │ ├── _geometry.py │ ├── _grid_geometry.py │ └── crs.py └── tests ├── __init__.py ├── notebooks └── test_notebooks.py ├── performance ├── test_grid2d.py ├── test_performance_dfs0.py └── test_performance_pfs.py ├── spatial ├── __init__.py ├── test_crs.py └── test_point.py ├── test_consistency.py ├── test_dataarray.py ├── test_dataset.py ├── test_dfs0.py ├── test_dfs1.py ├── test_dfs2.py ├── test_dfs3.py ├── test_dfsu2dh.py ├── test_dfsu2dv.py ├── test_dfsu3d.py ├── test_dfsu_plot.py ├── test_dfsu_spectral.py ├── test_eum.py ├── test_generic.py ├── test_geometry_fm.py ├── test_geometry_grid.py ├── test_integration.py ├── test_interpolation.py ├── test_mesh.py ├── test_pfs.py ├── test_shapely.py ├── test_time.py └── testdata ├── BW_Ronne_Layout1998_rotated.dfs2 ├── BW_Ronne_Layout1998_rotated_crop.dfs2 ├── FakeLake.dfsu ├── FakeLake_NONUTM.dfsu ├── Grid1.dfs3 ├── HD2D.dfsu ├── Karup_MIKE_SHE_head_output.dfs3 ├── Karup_MIKE_SHE_output.dfs2 ├── M3WFM_sponge_local_coordinates.dfs2 ├── MikeSheExtract.dfs2 ├── ModisExtract.dfs2 ├── NO_TS_MO_FINO1_202209.nc ├── NorthSea_HD_and_windspeed.dfsu ├── SimA_HD_p0.dfsu ├── SimA_HD_p1.dfsu ├── SimA_HD_p2.dfsu ├── SimA_HD_p3.dfsu ├── Sirius_IDF_rainfall.dfs0 ├── Slottskogen.asc.zip ├── State_Area.dfsu ├── State_wlbc_north_err.dfs1 ├── altimetry_NorthSea_20171027.csv ├── basin_2dv.dfsu ├── basin_3d.dfsu ├── co2-mm-mlo.csv ├── consistency ├── oresundHD.dfs0 ├── oresundHD.dfs1 ├── oresundHD.dfs2 └── oresundHD.dfsu ├── da_diagnostic.dfs0 ├── dissolved_oxygen.dfs3 ├── eq.dfs2 ├── eq_relative.dfs0 ├── europe_wind_long_lat.dfs2 ├── gebco_2020_n56.3_s55.2_w12.2_e13.1.nc ├── gebco_sound.dfs2 ├── gebco_sound_crop_rotate.dfs2 ├── gfs_wind.nc ├── global_long_lat_pacific_view_temperature_delta.dfs2 ├── hd_vertical_slice.dfs2 ├── kalundborg_coarse.mesh ├── kalundborg_transect.dfsu ├── local_coordinates.dfs3 ├── many_items.dfs0 ├── neq_daily_time_unit.dfs0 ├── north_sea_2.mesh ├── nx1.dfs1 ├── odense_rough.mesh ├── odense_rough2.MESH ├── oresundHD_run1.dfsu ├── oresundHD_run2.dfsu ├── oresund_sigma_z.dfsu ├── oresund_vertical_slice.dfsu ├── oresund_vertical_slice2.DFSU ├── pfs ├── Karup_basic.she ├── Karup_mini.she ├── OresundHD2D_EnKF10.m21fm ├── Setup_WaveSpectraConverter.21t ├── concat.mzt ├── filenames.pfs ├── grid1.gsf ├── illegal.pfs ├── lake.m21fm ├── lake.sw ├── minimal.ecolab ├── multiple_root_elements.pfs ├── multiple_unique_root_elements.pfs ├── multipolygon.pfs ├── nonunique.pfs ├── oresund.mdf ├── readme.md ├── simple.pfs ├── t1_t0.mzt └── tidal.21t ├── physical_basin_wave_maker_signal.dfs1 ├── positions.xyz ├── quad_tri.mesh ├── random.dfs0 ├── random.dfs1 ├── random.dfs2 ├── random_data_20_items_2d.dfsu ├── random_timestepunit_hours.dfs0 ├── random_two_item.dfs2 ├── single_layer.dfs3 ├── single_row.dfs2 ├── single_time_dt_zero.dfs2 ├── single_timestep.dfs3 ├── spectra ├── MIKE21SW_dir_sector_area_spectra.dfsu ├── North_BC_2024_subset.dfsu ├── area_freq_spectra.dfsu ├── area_spectra.dfsu ├── dir_wave_analysis_spectra.dfs2 ├── line_dir_spectra.dfsu ├── line_freq_spectra.dfsu ├── line_spectra.dfsu ├── line_spectra_degrees.dfsu ├── pt_freq_spectra.dfsu ├── pt_spectra.dfs2 ├── pt_spectra.dfsu └── pt_spectra_geographical.dfs2 ├── sw_points.dfs0 ├── template.sw ├── template_modified.sw ├── test_dfs3.dfs3 ├── tide1.dfs1 ├── tide12.dfs1 ├── tide2.dfs1 ├── tide2_offset.dfs1 ├── tide4.dfs1 ├── track_extraction_case02_indata.dfsu ├── track_extraction_case02_track.csv ├── txconc.dfs1 ├── untitled_3_items.dfs0 ├── utm_not_rotated_neurope_temp.dfs2 ├── uv_vertical_daily.dfs2 ├── vu_tide_hourly.dfs1 ├── water.xyz ├── waterlevel_north.dfs1 ├── waterlevel_viken.dfs0 ├── waves.dfs0 ├── waves.dfs2 ├── waves2.DFS0 ├── winches.xyz └── wind_north_sea.dfsu /.devcontainer/devcontainer.json: -------------------------------------------------------------------------------- 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