├── .github ├── actions │ └── setup-poetry │ │ └── action.yml └── workflows │ ├── checks.yml │ └── nb_runner.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .pylintrc ├── .readme_resources ├── bring_your_own_converted_documents.png ├── bring_your_own_pdf.png ├── data_extract_figures.png ├── data_query_chemistry.png ├── data_query_chemistry_patcid.png ├── data_query_quick_start.png ├── data_query_snippets.png ├── doc_conversion_quick_start.png ├── documentqa.png ├── extract_figures.png ├── extract_tables.png ├── integration_argilla.png ├── json_export.png ├── kg_download_quick_start.png ├── manage_attachments.png ├── qa_doc_collection.png └── visualize_bbox.png ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── MAINTAINERS.md ├── README.md ├── apt.txt ├── data ├── converted │ ├── 1806.02284.json │ ├── 2206.00785.json │ └── 2305.14962.json ├── samples │ ├── 20140197356.pdf │ ├── 2206.00785.pdf │ └── 2206.01062.pdf └── scanned-samples │ └── 2206.00785-7.png ├── dsnotebooks ├── __init__.py └── settings.py ├── example.env ├── examples ├── attachment_management │ ├── README.md │ └── manage_attachments.ipynb ├── bring_your_own_converted_documents │ ├── README.md │ └── upload_converted_documents.ipynb ├── bring_your_own_pdf │ ├── README.md │ └── upload_explore_download_pdfs.ipynb ├── data_query_chemistry │ ├── README.md │ └── chemistry.ipynb ├── data_query_chemistry_patcid │ ├── README.md │ └── chemistry_patcid.ipynb ├── data_query_quick_start │ ├── README.md │ └── quick_start.ipynb ├── data_query_snippets │ ├── README.md │ └── snippets.ipynb ├── document_bulk_upload │ └── run_batch_upload.py ├── document_conversion_custom_settings │ ├── README.md │ └── convert_documents_custom.ipynb ├── document_conversion_extract_figures │ ├── README.md │ └── extract_figures.py ├── document_conversion_extract_tables │ ├── README.md │ ├── extract_tables.ipynb │ └── extract_tables.py ├── document_conversion_quick_start │ ├── README.md │ └── convert_documents.ipynb ├── integration_argilla │ ├── README.md │ └── argilla_upload.ipynb ├── kg_download_quick_start │ ├── README.md │ └── kg_download_quick_start.ipynb ├── nlp_for_materials │ ├── README.md │ └── nlp_for_materials.ipynb ├── nlp_for_references │ ├── README.md │ └── nlp_for_references.ipynb ├── nlp_on_documents │ ├── README.md │ └── nlp_on_documents.ipynb └── qa │ ├── README.md │ ├── qa_deep_dive.ipynb │ └── qa_quick_start.ipynb ├── nbrunner ├── README.md ├── __init__.py ├── nb_runner.py └── settings.py ├── poetry.lock ├── pyproject.toml ├── requirements.txt └── runtime.txt /.github/actions/setup-poetry/action.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DS4SD/deepsearch-examples/HEAD/.github/actions/setup-poetry/action.yml -------------------------------------------------------------------------------- /.github/workflows/checks.yml: -------------------------------------------------------------------------------- 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