├── .gitignore ├── .idea ├── dbnavigator.xml ├── misc.xml ├── modules.xml ├── swc2vtk.iml └── vcs.xml ├── .travis.yml ├── LICENSE ├── MANIFEST.in ├── README.md ├── _docs ├── Makefile ├── _static │ ├── sb_simulation.png │ ├── sb_simulation_top.png │ ├── simple.0000.png │ ├── simple.0001.png │ ├── simple.0002.png │ ├── simple.0003.png │ ├── simple_filtered.0003.png │ ├── singleneuron.png │ ├── singleneuron_small.png │ ├── volume.png │ └── volume2.png ├── annotations.rst ├── apis │ ├── modules.rst │ └── swc2vtk.rst ├── conf.py ├── conf.py~ ├── drawmode.rst ├── examples.rst ├── gallery.rst ├── index.rst ├── make.bat ├── readme.rst └── volume.rst ├── docs ├── .buildinfo ├── .doctrees │ ├── annotations.doctree │ ├── apis │ │ ├── modules.doctree │ │ └── swc2vtk.doctree │ ├── drawmode.doctree │ ├── environment.pickle │ ├── examples.doctree │ ├── gallery.doctree │ ├── index.doctree │ ├── readme.doctree │ └── volume.doctree ├── .nojekyll ├── _downloads │ ├── simple.dat │ └── simple.swc ├── _images │ ├── sb_simulation.png │ ├── sb_simulation_top.png │ ├── simple.0000.png │ ├── simple.0001.png │ ├── simple.0002.png │ ├── simple.0003.png │ ├── simple_annotation1.png │ ├── simple_annotation2.png │ ├── simple_annotation3.png │ ├── simple_filtered.0003.png │ ├── singleneuron.png │ ├── volume.png │ └── volume2.png ├── _sources │ ├── annotations.rst.txt │ ├── apis │ │ ├── modules.rst.txt │ │ └── swc2vtk.rst.txt │ ├── drawmode.rst.txt │ ├── examples.rst.txt │ ├── gallery.rst.txt │ ├── index.rst.txt │ ├── readme.rst.txt │ └── volume.rst.txt ├── _static │ ├── ajax-loader.gif │ ├── annotation1.png │ ├── basic.css │ ├── comment-bright.png │ ├── comment-close.png │ ├── comment.png │ ├── css │ │ ├── badge_only.css │ │ └── theme.css │ ├── doctools.js │ ├── down-pressed.png │ ├── down.png │ ├── file.png │ ├── fonts │ │ ├── Inconsolata-Bold.ttf │ │ ├── Inconsolata-Regular.ttf │ │ ├── Lato-Bold.ttf │ │ ├── Lato-Regular.ttf │ │ ├── RobotoSlab-Bold.ttf │ │ ├── RobotoSlab-Regular.ttf │ │ ├── fontawesome-webfont.eot │ │ ├── fontawesome-webfont.svg │ │ ├── fontawesome-webfont.ttf │ │ └── fontawesome-webfont.woff │ ├── jquery-3.1.0.js │ ├── jquery.js │ ├── js │ │ ├── modernizr.min.js │ │ └── theme.js │ ├── minus.png │ ├── plus.png │ ├── pygments.css │ ├── sb_simulation.png │ ├── sb_simulation_top.png │ ├── searchtools.js │ ├── simple.0000.png │ ├── simple.0001.png │ ├── simple.0002.png │ ├── simple.0003.png │ ├── simple_annotation1.png │ ├── simple_annotation2.png │ ├── simple_annotation3.png │ ├── simple_filtered.0003.png │ ├── singleneuron.png │ ├── underscore-1.3.1.js │ ├── underscore.js │ ├── up-pressed.png │ ├── up.png │ ├── volume.png │ ├── volume2.png │ └── websupport.js ├── annotations.html ├── apis │ ├── modules.html │ └── swc2vtk.html ├── drawmode.html ├── examples.html ├── gallery.html ├── genindex.html ├── index.html ├── objects.inv ├── py-modindex.html ├── readme.html ├── search.html ├── searchindex.js └── volume.html ├── examples ├── __init__.py ├── append_allswc.py ├── convert_allswc.py ├── flip_swc.py ├── gen_volume.py ├── make_annotation.py ├── make_movie.py ├── simple.py ├── swcfilelist.py ├── test_primitives.py ├── test_quality.py ├── test_rotcube.py └── test_simulation.py ├── register.py ├── setup.py ├── swc ├── 0004_regist.swc ├── 0005_regist.swc ├── 0008_regist.swc ├── 0009_regist.swc ├── 0012_regist.swc ├── 0017_regist.swc ├── 0019_regist.swc ├── 0021_regist.swc ├── 0655_regist.swc ├── 0661_regist.swc ├── 0663_regist.swc ├── 0664_regist.swc ├── 090815_4_sn_reg.swc ├── 0965_regist.swc ├── 0969_regist.swc ├── 0970_regist.swc ├── 0973_regist.swc ├── 0984_regist.swc ├── 0986_regist.swc ├── 200000.swc ├── 300000.swc ├── 301000.swc ├── Swc_BN_1056.swc └── simple.swc ├── swc2vtk ├── __init__.py ├── genprimitives.py ├── swc.py └── vtkgenerator.py └── tests ├── __init__.py ├── simple.dat ├── simple.swc ├── test.dat ├── test_genprimitives.py └── test_vtkgenerator.py /.gitignore: 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