├── CarotidSegmentation.m ├── DICOMSlices2Vol.m ├── ImgCoreg.m ├── ImgReg_VesSeg_TAC_PVC.m ├── LICENSE ├── NIfTI_20140122 ├── FAQ.pdf ├── NIfTI_tools.pdf ├── UseANALYZE.pdf ├── affine.m ├── bipolar.m ├── bresenham_line3d.m ├── clip_nii.m ├── collapse_nii_scan.m ├── examples.txt ├── expand_nii_scan.m ├── extra_nii_hdr.m ├── flip_lr.m ├── get_nii_frame.m ├── license.txt ├── load_nii.m ├── load_nii_ext.m ├── load_nii_hdr.m ├── load_nii_img.m ├── load_untouch0_nii_hdr.m ├── load_untouch_header_only.m ├── load_untouch_nii.m ├── load_untouch_nii_hdr.m ├── load_untouch_nii_img.m ├── make_ana.m ├── make_nii.m ├── mat_into_hdr.m ├── pad_nii.m ├── reslice_nii.m ├── rri_file_menu.m ├── rri_orient.m ├── rri_orient_ui.m ├── rri_select_file.m ├── rri_xhair.m ├── rri_zoom_menu.m ├── save_nii.m ├── save_nii_ext.m ├── save_nii_hdr.m ├── save_untouch0_nii_hdr.m ├── save_untouch_header_only.m ├── save_untouch_nii.m ├── save_untouch_nii_hdr.m ├── save_untouch_slice.m ├── unxform_nii.m ├── verify_nii_ext.m ├── view_nii.m ├── view_nii_menu.m └── xform_nii.m ├── PVC ├── GTM.m ├── PVC.m └── SmallROI.m ├── README.md ├── Vessel Segmentaion and TAC ├── Hessian3D.m ├── ImgBinarization.m ├── OtsuMethod.m ├── TimeActivityCurve3.m ├── connect_component.m ├── connect_component_allCarotids.m ├── eig3_v2.m └── enhancement_filter.m ├── image registration ├── AdjOrientation.m ├── Bracketmin.m ├── BrentMethod.m ├── CenterofMass.m ├── ChopImg2.m ├── FuncEval1.m ├── FuncEval2.m ├── ImReg.m ├── InitialGuess2.m ├── JointHist.m ├── Linmin.m ├── MutualInfo.m ├── Powell.m ├── RigidTransTriLinear.m └── TrilinearInterpolation.m ├── images ├── Patient3_auto_256_240_176.pdf ├── Patient3_auto_256_240_176_2.pdf ├── Patient3_ori_256_240_176.pdf ├── TAC_Pationt3_AUTOreg_AUTOseg_all.pdf ├── TAC_Pationt3_AUTOreg_AUTOseg_part.pdf ├── TACpvc_Pationt3_all.pdf └── TACpvc_Pationt3_part.pdf └── visualization plan B ├── MIP_plot.m ├── plot_image.m └── plot_image2.m /CarotidSegmentation.m: 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