├── .Rprofile ├── .gitignore ├── LICENSE ├── README.Rmd ├── README.md ├── data ├── ARFLOUNDBSAI.rds ├── namibian_hake_data.csv └── tuna_data.csv ├── generate-stan-predictions.R ├── gentoo.R ├── hake_schaefer_model.R ├── imgs ├── bridge.png ├── golem.pdf ├── hmc.pdf ├── hmc.png ├── jacks.jpg ├── kfold.png ├── rethinking-golem.png └── school.png ├── libs ├── fabric │ └── fabric.min.js ├── header-attrs │ └── header-attrs.js ├── htmlwidgets │ └── htmlwidgets.js ├── jsonedit-binding │ └── jsonedit.js ├── jsoneditor │ ├── img │ │ ├── jsoneditor-icons.png │ │ └── jsoneditor-icons.svg │ ├── jsoneditor.min.css │ └── jsoneditor.min.js ├── remark-css │ ├── default-fonts.css │ └── default.css ├── tile-view │ ├── tile-view.css │ └── tile-view.js └── xaringanExtra-scribble │ ├── scribble.css │ └── scribble.js ├── macros.js ├── my-theme.css ├── renv.lock ├── renv ├── .gitignore ├── activate.R └── settings.dcf ├── slides.Rmd ├── slides.html ├── slides_files └── figure-html │ ├── unnamed-chunk-10-1.svg │ ├── unnamed-chunk-17-1.svg │ ├── unnamed-chunk-18-1.svg │ ├── unnamed-chunk-19-1.svg │ ├── unnamed-chunk-26-1.svg │ ├── unnamed-chunk-27-1.svg │ ├── unnamed-chunk-28-1.svg │ ├── unnamed-chunk-29-1.svg │ ├── unnamed-chunk-33-1.svg │ ├── unnamed-chunk-34-1.svg │ ├── unnamed-chunk-35-1.svg │ ├── unnamed-chunk-36-1.svg │ ├── unnamed-chunk-37-1.svg │ ├── unnamed-chunk-39-1.svg │ ├── unnamed-chunk-42-1.svg │ ├── unnamed-chunk-43-1.svg │ ├── unnamed-chunk-44-1.svg │ ├── unnamed-chunk-45-1.svg │ ├── unnamed-chunk-46-1.svg │ ├── unnamed-chunk-49-1.svg │ ├── unnamed-chunk-54-1.svg │ ├── unnamed-chunk-55-1.svg │ ├── unnamed-chunk-56-1.svg │ ├── unnamed-chunk-57-1.svg │ ├── unnamed-chunk-58-1.svg │ ├── unnamed-chunk-6-1.svg │ ├── unnamed-chunk-7-1.svg │ └── unnamed-chunk-9-1.svg └── src ├── bh_model.stan ├── generic_stock_recruit.stan ├── hake.stan ├── schaefer.rds ├── schaefer.stan ├── scratch.R ├── scratch.stan ├── state_space_schaefer.rds └── state_space_schaefer.stan /.Rprofile: 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