├── .gitattributes ├── .gitignore ├── ConservationPlanning ├── Marxan-PD-vignette.html ├── PD_for_Marxan_example.r ├── PrepareMarxanInputs.r ├── Sample_Data_Australia │ ├── Australia_360x114.dbf │ ├── Australia_360x114.prj │ ├── Australia_360x114.shp │ ├── Australia_360x114.shx │ ├── Fritz.Resolved.Normal_first5_Aust.nwk │ ├── Mammals 2010 Range Tree Lookup Aust.csv │ ├── Occ360x114Mammals_2010_Australia.csv │ ├── SpecMaster_Australia.csv │ └── pu.dat ├── tree_fig.emf └── tree_fig.png ├── License.txt ├── LineageModels ├── Batch Multi-lineage range method.py ├── Demo_data.zip ├── SpatialFunctions.py ├── SpatialFunctions.pyc ├── align_models.r ├── multi-lineage range method.r ├── phylogenetic diversity from models.r └── phylogenetic endemism.r ├── PhyloEndemism_in_R ├── Small Demo Data │ ├── PE_test_tree.nex │ ├── TestCalcSites.csv │ └── Translate.txt ├── Tree Frog Data │ ├── aust_hylids_apr09.nex │ ├── modelled_hylids_sep08_NEQLD.csv │ └── translate_hylid_names_aug08.csv ├── calc_PE.r 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