├── .Rbuildignore ├── .github ├── .gitignore.deploy └── workflows │ ├── check.yml │ ├── comment_master_pr.yml │ └── master_pr_msg.md ├── .gitignore ├── CONTRIBUTORS ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── RcppExports.R ├── accessors_carp.R ├── accessors_cbass.R ├── carp.R ├── cbass.R ├── clustRviz-package.R ├── data.R ├── logging.R ├── options.R ├── plot_carp.R ├── plot_cbass.R ├── solvers.R ├── util_hcs.R ├── util_plot.R ├── utils.R ├── weights.R └── zzz.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── clustRviz.Rproj ├── codecov.yml ├── data ├── authors.rda ├── presidential_speech.rda └── tcga_breast.rda ├── docs ├── 404.html ├── LICENSE-text.html ├── articles │ ├── Acknowledgements.html │ ├── Acknowledgements_files │ │ └── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ ├── Algorithms.html │ ├── Algorithms_files │ │ └── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ ├── Tutorial.html │ ├── Tutorial_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── colourpicker-1.1 │ │ │ ├── LICENSE │ │ │ ├── colourpicker.min.css │ │ │ └── colourpicker.min.js │ │ ├── crosstalk-1.1.0.1 │ │ │ ├── css │ │ │ │ └── crosstalk.css │ │ │ └── js │ │ │ │ ├── crosstalk.js │ │ │ │ ├── crosstalk.js.map │ │ │ │ ├── crosstalk.min.js │ │ │ │ └── crosstalk.min.js.map │ │ ├── figure-html │ │ │ ├── unnamed-chunk-11-1.png │ │ │ ├── unnamed-chunk-12-1.png │ │ │ ├── unnamed-chunk-13-1.png │ │ │ ├── unnamed-chunk-14-1.png │ │ │ ├── unnamed-chunk-15-1.gif │ │ │ ├── unnamed-chunk-16-1.png │ │ │ ├── unnamed-chunk-17-1.png │ │ │ ├── unnamed-chunk-18-1.gif │ │ │ ├── unnamed-chunk-19-1.png │ │ │ ├── unnamed-chunk-22-1.png │ │ │ ├── unnamed-chunk-23-1.png │ │ │ └── unnamed-chunk-24-1.gif │ │ ├── htmlwidgets-1.5.1 │ │ │ └── htmlwidgets.js │ │ ├── jquery-1.11.3 │ │ │ ├── jquery-AUTHORS.txt │ │ │ ├── jquery.js │ │ │ ├── jquery.min.js │ │ │ └── jquery.min.map │ │ ├── plotly-binding-4.9.2.1 │ │ │ └── plotly.js │ │ ├── plotly-htmlwidgets-css-1.52.2 │ │ │ └── plotly-htmlwidgets.css │ │ ├── plotly-main-1.52.2 │ │ │ └── plotly-latest.min.js │ │ └── typedarray-0.1 │ │ │ └── typedarray.min.js │ ├── Weights.html │ ├── Weights_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ └── figure-html │ │ │ ├── unnamed-chunk-15-1.png │ │ │ ├── unnamed-chunk-17-1.png │ │ │ ├── unnamed-chunk-20-1.png │ │ │ ├── unnamed-chunk-3-1.png │ │ │ └── unnamed-chunk-9-1.png │ ├── clustRviz.html │ ├── clustRviz_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ └── figure-html │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-11-1.png │ │ │ ├── unnamed-chunk-12-1.gif │ │ │ ├── unnamed-chunk-13-1.png │ │ │ ├── unnamed-chunk-2-1.png │ │ │ ├── unnamed-chunk-3-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-5-1.gif │ │ │ ├── unnamed-chunk-6-1.png │ │ │ ├── unnamed-chunk-8-1.png │ │ │ └── unnamed-chunk-9-1.png │ └── index.html ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── CARP-1.png │ ├── CARP.html │ ├── CBASS.html │ ├── accessors_carp.html │ ├── accessors_cbass-1.png │ ├── accessors_cbass.html │ ├── authors.html │ ├── clustRviz.html │ ├── clustRviz_logging.html │ ├── convex_biclustering.html │ ├── convex_clustering.html │ ├── figures │ ├── README-carp_dendro-1.png │ ├── README-cbass-1.png │ ├── README-cbass_heatmap2-1.png │ └── README-cbass_rowdendro-1.png │ ├── index.html │ ├── options.html │ ├── plot_carp-1.png │ ├── plot_carp-2.png │ ├── plot_carp-3.png │ ├── plot_carp.html │ ├── plot_cbass-1.png │ ├── plot_cbass-2.png │ ├── plot_cbass-3.png │ ├── plot_cbass-4.png │ ├── plot_cbass.html │ ├── presidential_speech.html │ ├── print.ConvexBiClustering.html │ ├── print.ConvexClustering.html │ ├── print_carp.html │ ├── print_cbass.html │ ├── rbf_kernel_weights.html │ └── tcga_breast.html ├── inst └── CITATION ├── man ├── CARP.Rd ├── CBASS.Rd ├── accessors_carp.Rd ├── accessors_cbass.Rd ├── authors.Rd ├── clustRviz.Rd ├── clustRviz_logging.Rd ├── convex_biclustering.Rd ├── convex_clustering.Rd ├── figures │ ├── README-carp_dendro-1.png │ ├── README-cbass-1.png │ ├── README-cbass_heatmap2-1.png │ └── README-cbass_rowdendro-1.png ├── options.Rd ├── plot_carp.Rd ├── plot_cbass.Rd ├── presidential_speech.Rd ├── print.ConvexBiClustering.Rd ├── print.ConvexClustering.Rd ├── print_carp.Rd ├── print_cbass.Rd ├── rbf_kernel_weights.Rd └── tcga_breast.Rd ├── src ├── .gitignore ├── Makevars ├── Makevars.win ├── RcppExports.cpp ├── alg_reg_policies.h ├── biclustering_impl.h ├── clustRviz.cpp ├── clustRviz.h ├── clustRviz_base.h ├── clustRviz_logging.cpp ├── clustRviz_logging.h ├── clustering_impl.h ├── get_cluster_assignments.cpp ├── optim_policies.h ├── status.h └── utils.cpp ├── tests ├── test_admm.R ├── test_carp_accessors.R ├── test_carp_error_handling.R ├── test_carp_misc.R ├── test_carp_missing_data.R ├── test_carp_plot_static.R ├── 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