├── LICENSE ├── R └── rego │ ├── COPYRIGHTS │ ├── DESCRIPTION │ ├── LICENSE │ ├── NAMESPACE │ ├── R │ └── rego.R │ ├── data │ └── Data.rda │ ├── inst │ ├── COPYRIGHTS │ └── include │ │ ├── armadillo │ │ ├── LICENSE.txt │ │ ├── NOTICE.txt │ │ ├── README.md │ │ ├── VERSION.txt │ │ └── include │ │ │ ├── armadillo │ │ │ └── armadillo_bits │ │ │ ├── BaseCube_bones.hpp │ │ │ ├── BaseCube_meat.hpp │ │ │ ├── Base_bones.hpp │ │ │ ├── Base_meat.hpp │ │ │ ├── Col_bones.hpp │ │ │ ├── Col_meat.hpp │ │ │ ├── CubeToMatOp_bones.hpp │ │ │ ├── CubeToMatOp_meat.hpp │ │ │ ├── Cube_bones.hpp │ │ │ ├── Cube_meat.hpp │ │ │ ├── GenCube_bones.hpp │ │ │ ├── GenCube_meat.hpp │ │ │ ├── GenSpecialiser.hpp │ │ │ ├── Gen_bones.hpp │ │ │ ├── Gen_meat.hpp │ │ │ ├── GlueCube_bones.hpp │ │ │ ├── GlueCube_meat.hpp │ │ │ ├── Glue_bones.hpp │ │ │ ├── Glue_meat.hpp │ │ │ ├── MapMat_bones.hpp │ │ │ ├── MapMat_meat.hpp │ │ │ ├── Mat_bones.hpp │ │ │ ├── Mat_meat.hpp │ │ │ ├── OpCube_bones.hpp │ │ │ ├── OpCube_meat.hpp │ │ │ ├── Op_bones.hpp │ │ │ ├── Op_meat.hpp │ │ │ ├── Proxy.hpp │ │ │ ├── ProxyCube.hpp │ │ │ ├── Row_bones.hpp │ │ │ ├── Row_meat.hpp │ │ │ ├── SizeCube_bones.hpp │ │ │ ├── SizeCube_meat.hpp │ │ │ ├── SizeMat_bones.hpp │ │ │ ├── SizeMat_meat.hpp │ │ │ ├── SpBase_bones.hpp │ │ │ ├── SpBase_meat.hpp │ │ │ ├── SpCol_bones.hpp │ │ │ ├── SpCol_meat.hpp │ │ │ ├── SpGlue_bones.hpp │ │ │ ├── SpGlue_meat.hpp │ │ │ ├── SpMat_bones.hpp │ │ │ ├── SpMat_iterators_meat.hpp │ │ │ ├── SpMat_meat.hpp │ │ │ ├── SpOp_bones.hpp │ │ │ ├── SpOp_meat.hpp │ │ │ ├── SpProxy.hpp │ │ │ ├── SpRow_bones.hpp │ │ │ ├── SpRow_meat.hpp │ │ │ ├── SpSubview_bones.hpp │ │ │ ├── SpSubview_iterators_meat.hpp │ │ │ ├── SpSubview_meat.hpp │ │ │ ├── SpToDOp_bones.hpp │ │ │ ├── SpToDOp_meat.hpp │ │ │ ├── SpValProxy_bones.hpp │ │ │ ├── SpValProxy_meat.hpp │ │ │ ├── access.hpp │ │ │ ├── arma_cmath.hpp │ │ │ ├── arma_config.hpp │ │ │ ├── arma_forward.hpp │ │ │ ├── arma_ostream_bones.hpp │ │ │ ├── arma_ostream_meat.hpp │ │ │ ├── arma_rel_comparators.hpp │ │ │ ├── arma_rng.hpp │ │ │ ├── arma_rng_cxx11.hpp │ │ │ ├── arma_rng_cxx98.hpp │ │ │ ├── arma_static_check.hpp │ │ │ ├── arma_str.hpp │ │ │ ├── arma_version.hpp │ │ │ ├── arrayops_bones.hpp │ │ │ ├── arrayops_meat.hpp │ │ │ ├── auxlib_bones.hpp │ │ │ ├── auxlib_meat.hpp │ │ │ ├── band_helper.hpp │ │ │ ├── compiler_extra.hpp │ │ │ ├── compiler_setup.hpp │ │ │ ├── compiler_setup_post.hpp │ │ │ ├── cond_rel_bones.hpp │ │ │ ├── cond_rel_meat.hpp │ │ │ ├── config.hpp │ │ │ ├── config.hpp.cmake │ │ │ ├── constants.hpp │ │ │ ├── constants_old.hpp │ │ │ ├── csv_name.hpp │ │ │ ├── debug.hpp │ │ │ ├── def_arpack.hpp │ │ │ ├── def_atlas.hpp │ │ │ ├── def_blas.hpp │ │ │ ├── def_hdf5.hpp │ │ │ ├── def_lapack.hpp │ │ │ ├── def_superlu.hpp │ │ │ ├── diagmat_proxy.hpp │ │ │ ├── diagview_bones.hpp │ │ │ ├── diagview_meat.hpp │ │ │ ├── diskio_bones.hpp │ │ │ ├── diskio_meat.hpp │ │ │ ├── distr_param.hpp │ │ │ ├── eGlueCube_bones.hpp │ │ │ ├── eGlueCube_meat.hpp │ │ │ ├── eGlue_bones.hpp │ │ │ ├── eGlue_meat.hpp │ │ │ ├── eOpCube_bones.hpp │ │ │ ├── eOpCube_meat.hpp │ │ │ ├── eOp_bones.hpp │ │ │ ├── eOp_meat.hpp │ │ │ ├── eglue_core_bones.hpp │ │ │ ├── eglue_core_meat.hpp │ │ │ ├── eop_aux.hpp │ │ │ ├── eop_core_bones.hpp │ │ │ ├── eop_core_meat.hpp │ │ │ ├── fft_engine.hpp │ │ │ ├── field_bones.hpp │ │ │ ├── field_meat.hpp │ │ │ ├── fn_accu.hpp │ │ │ ├── fn_all.hpp │ │ │ ├── fn_any.hpp │ │ │ ├── fn_approx_equal.hpp │ │ │ ├── fn_as_scalar.hpp │ │ │ ├── fn_chi2rnd.hpp │ │ │ ├── fn_chol.hpp │ │ │ ├── fn_clamp.hpp │ │ │ ├── fn_cond.hpp │ │ │ ├── fn_conv.hpp │ │ │ ├── fn_conv_to.hpp │ │ │ ├── fn_cor.hpp │ │ │ ├── fn_cov.hpp │ │ │ ├── fn_cross.hpp │ │ │ ├── fn_cumprod.hpp │ │ │ ├── fn_cumsum.hpp │ │ │ ├── fn_det.hpp │ │ │ ├── fn_diagmat.hpp │ │ │ ├── fn_diagvec.hpp │ │ │ ├── fn_diff.hpp │ │ │ ├── fn_dot.hpp │ │ │ ├── fn_eig_gen.hpp │ │ │ ├── fn_eig_pair.hpp │ │ │ ├── fn_eig_sym.hpp │ │ │ ├── fn_eigs_gen.hpp │ │ │ ├── fn_eigs_sym.hpp │ │ │ ├── fn_elem.hpp │ │ │ ├── fn_eps.hpp │ │ │ ├── fn_expmat.hpp │ │ │ ├── fn_eye.hpp │ │ │ ├── fn_fft.hpp │ │ │ ├── fn_fft2.hpp │ │ │ ├── fn_find.hpp │ │ │ ├── fn_find_unique.hpp │ │ │ ├── fn_flip.hpp │ │ │ ├── fn_hess.hpp │ │ │ ├── fn_hist.hpp │ │ │ ├── fn_histc.hpp │ │ │ ├── fn_index_max.hpp │ │ │ ├── fn_index_min.hpp │ │ │ ├── fn_inplace_strans.hpp │ │ │ ├── fn_inplace_trans.hpp │ │ │ ├── fn_interp1.hpp │ │ │ ├── fn_interp2.hpp │ │ │ ├── fn_intersect.hpp │ │ │ ├── fn_inv.hpp │ │ │ ├── fn_join.hpp │ │ │ ├── fn_kmeans.hpp │ │ │ ├── fn_kron.hpp │ │ │ ├── fn_log_det.hpp │ │ │ ├── fn_log_normpdf.hpp │ │ │ ├── fn_logmat.hpp │ │ │ ├── fn_lu.hpp │ │ │ ├── fn_max.hpp │ │ │ ├── fn_mean.hpp │ │ │ ├── fn_median.hpp │ │ │ ├── fn_min.hpp │ │ │ ├── fn_misc.hpp │ │ │ ├── fn_mvnrnd.hpp │ │ │ ├── fn_n_unique.hpp │ │ │ ├── fn_nonzeros.hpp │ │ │ ├── fn_norm.hpp │ │ │ ├── fn_normalise.hpp │ │ │ ├── fn_normcdf.hpp │ │ │ ├── fn_normpdf.hpp │ │ │ ├── fn_numel.hpp │ │ │ ├── fn_ones.hpp │ │ │ ├── fn_orth_null.hpp │ │ │ ├── fn_pinv.hpp │ │ │ ├── fn_polyfit.hpp │ │ │ ├── fn_polyval.hpp │ │ │ ├── fn_powmat.hpp │ │ │ ├── fn_princomp.hpp │ │ │ ├── fn_prod.hpp │ │ │ ├── fn_qr.hpp │ │ │ ├── fn_quantile.hpp │ │ │ ├── fn_qz.hpp │ │ │ ├── fn_randg.hpp │ │ │ ├── fn_randi.hpp │ │ │ ├── fn_randn.hpp │ │ │ ├── fn_randperm.hpp │ │ │ ├── fn_randu.hpp │ │ │ ├── fn_range.hpp │ │ │ ├── fn_rank.hpp │ │ │ ├── fn_regspace.hpp │ │ │ ├── fn_repelem.hpp │ │ │ ├── fn_repmat.hpp │ │ │ ├── fn_reshape.hpp │ │ │ ├── fn_resize.hpp │ │ │ ├── fn_reverse.hpp │ │ │ ├── fn_roots.hpp │ │ │ ├── fn_schur.hpp │ │ │ ├── fn_shift.hpp │ │ │ ├── fn_shuffle.hpp │ │ │ ├── fn_size.hpp │ │ │ ├── fn_solve.hpp │ │ │ ├── fn_sort.hpp │ │ │ ├── fn_sort_index.hpp │ │ │ ├── fn_speye.hpp │ │ │ ├── fn_spones.hpp │ │ │ ├── fn_sprandn.hpp │ │ │ ├── fn_sprandu.hpp │ │ │ ├── fn_spsolve.hpp │ │ │ ├── fn_sqrtmat.hpp │ │ │ ├── fn_stddev.hpp │ │ │ ├── fn_strans.hpp │ │ │ ├── fn_sum.hpp │ │ │ ├── fn_svd.hpp │ │ │ ├── fn_svds.hpp │ │ │ ├── fn_syl_lyap.hpp │ │ │ ├── fn_symmat.hpp │ │ │ ├── fn_toeplitz.hpp │ │ │ ├── fn_trace.hpp │ │ │ ├── fn_trans.hpp │ │ │ ├── fn_trapz.hpp │ │ │ ├── fn_trig.hpp │ │ │ ├── fn_trimat.hpp │ │ │ ├── fn_trunc_exp.hpp │ │ │ ├── fn_trunc_log.hpp │ │ │ ├── fn_unique.hpp │ │ │ ├── fn_var.hpp │ │ │ ├── fn_vectorise.hpp │ │ │ ├── fn_wishrnd.hpp │ │ │ ├── fn_zeros.hpp │ │ │ ├── glue_affmul_bones.hpp │ │ │ ├── glue_affmul_meat.hpp │ │ │ ├── glue_atan2_bones.hpp │ │ │ ├── glue_atan2_meat.hpp │ │ │ ├── glue_conv_bones.hpp │ │ │ ├── glue_conv_meat.hpp │ │ │ ├── glue_cor_bones.hpp │ │ │ ├── glue_cor_meat.hpp │ │ │ ├── glue_cov_bones.hpp │ │ │ ├── glue_cov_meat.hpp │ │ │ ├── glue_cross_bones.hpp │ │ │ ├── glue_cross_meat.hpp │ │ │ ├── glue_hist_bones.hpp │ │ │ ├── glue_hist_meat.hpp │ │ │ ├── glue_histc_bones.hpp │ │ │ ├── glue_histc_meat.hpp │ │ │ ├── glue_hypot_bones.hpp │ │ │ ├── glue_hypot_meat.hpp │ │ │ ├── glue_intersect_bones.hpp │ │ │ ├── glue_intersect_meat.hpp │ │ │ ├── glue_join_bones.hpp │ │ │ ├── glue_join_meat.hpp │ │ │ ├── glue_kron_bones.hpp │ │ │ ├── glue_kron_meat.hpp │ │ │ ├── glue_max_bones.hpp │ │ │ ├── glue_max_meat.hpp │ │ │ ├── glue_min_bones.hpp │ │ │ ├── glue_min_meat.hpp │ │ │ ├── glue_mixed_bones.hpp │ │ │ ├── glue_mixed_meat.hpp │ │ │ ├── glue_mvnrnd_bones.hpp │ │ │ ├── glue_mvnrnd_meat.hpp │ │ │ ├── glue_polyfit_bones.hpp │ │ │ ├── glue_polyfit_meat.hpp │ │ │ ├── glue_polyval_bones.hpp │ │ │ ├── glue_polyval_meat.hpp │ │ │ ├── glue_quantile_bones.hpp │ │ │ ├── glue_quantile_meat.hpp │ │ │ ├── glue_relational_bones.hpp │ │ │ ├── glue_relational_meat.hpp │ │ │ ├── glue_solve_bones.hpp │ │ │ ├── glue_solve_meat.hpp │ │ │ ├── glue_times_bones.hpp │ │ │ ├── glue_times_meat.hpp │ │ │ ├── glue_toeplitz_bones.hpp │ │ │ ├── glue_toeplitz_meat.hpp │ │ │ ├── glue_trapz_bones.hpp │ │ │ ├── glue_trapz_meat.hpp │ │ │ ├── gmm_diag_bones.hpp │ │ │ ├── gmm_diag_meat.hpp │ │ │ ├── gmm_full_bones.hpp │ │ │ ├── gmm_full_meat.hpp │ │ │ ├── gmm_misc_bones.hpp │ │ │ ├── gmm_misc_meat.hpp │ │ │ ├── hdf5_misc.hpp │ │ │ ├── hdf5_name.hpp │ │ │ ├── include_atlas.hpp │ │ │ ├── include_hdf5.hpp │ │ │ ├── include_superlu.hpp │ │ │ ├── injector_bones.hpp │ │ │ ├── injector_meat.hpp │ │ │ ├── memory.hpp │ │ │ ├── mp_misc.hpp │ │ │ ├── mtGlueCube_bones.hpp │ │ │ ├── mtGlueCube_meat.hpp │ │ │ ├── mtGlue_bones.hpp │ │ │ ├── mtGlue_meat.hpp │ │ │ ├── mtOpCube_bones.hpp │ │ │ ├── mtOpCube_meat.hpp │ │ │ ├── mtOp_bones.hpp │ │ │ ├── mtOp_meat.hpp │ │ │ ├── mtSpGlue_bones.hpp │ │ │ ├── mtSpGlue_meat.hpp │ │ │ ├── mtSpOp_bones.hpp │ │ │ ├── mtSpOp_meat.hpp │ │ │ ├── mul_gemm.hpp │ │ │ ├── mul_gemm_mixed.hpp │ │ │ ├── mul_gemv.hpp │ │ │ ├── mul_herk.hpp │ │ │ ├── mul_syrk.hpp │ │ │ ├── newarp_DenseGenMatProd_bones.hpp │ │ │ ├── newarp_DenseGenMatProd_meat.hpp │ │ │ ├── newarp_DoubleShiftQR_bones.hpp │ │ │ ├── newarp_DoubleShiftQR_meat.hpp │ │ │ ├── newarp_EigsSelect.hpp │ │ │ ├── newarp_GenEigsSolver_bones.hpp │ │ │ ├── newarp_GenEigsSolver_meat.hpp │ │ │ ├── newarp_SortEigenvalue.hpp │ │ │ ├── newarp_SparseGenMatProd_bones.hpp │ │ │ ├── newarp_SparseGenMatProd_meat.hpp │ │ │ ├── newarp_SymEigsSolver_bones.hpp │ │ │ ├── newarp_SymEigsSolver_meat.hpp │ │ │ ├── newarp_TridiagEigen_bones.hpp │ │ │ ├── newarp_TridiagEigen_meat.hpp │ │ │ ├── newarp_UpperHessenbergEigen_bones.hpp │ │ │ ├── newarp_UpperHessenbergEigen_meat.hpp │ │ │ ├── newarp_UpperHessenbergQR_bones.hpp │ │ │ ├── newarp_UpperHessenbergQR_meat.hpp │ │ │ ├── newarp_cx_attrib.hpp │ │ │ ├── op_all_bones.hpp │ │ │ ├── op_all_meat.hpp │ │ │ ├── op_any_bones.hpp │ │ │ ├── op_any_meat.hpp │ │ │ ├── op_chi2rnd_bones.hpp │ │ │ ├── op_chi2rnd_meat.hpp │ │ │ ├── op_chol_bones.hpp │ │ │ ├── op_chol_meat.hpp │ │ │ ├── op_clamp_bones.hpp │ │ │ ├── op_clamp_meat.hpp │ │ │ ├── op_cond_bones.hpp │ │ │ ├── op_cond_meat.hpp │ │ │ ├── op_cor_bones.hpp │ │ │ ├── op_cor_meat.hpp │ │ │ ├── op_cov_bones.hpp │ │ │ ├── op_cov_meat.hpp │ │ │ ├── op_cumprod_bones.hpp │ │ │ ├── op_cumprod_meat.hpp │ │ │ ├── op_cumsum_bones.hpp │ │ │ ├── op_cumsum_meat.hpp │ │ │ ├── op_cx_scalar_bones.hpp │ │ │ ├── op_cx_scalar_meat.hpp │ │ │ ├── op_diagmat_bones.hpp │ │ │ ├── op_diagmat_meat.hpp │ │ │ ├── op_diagvec_bones.hpp │ │ │ ├── op_diagvec_meat.hpp │ │ │ ├── op_diff_bones.hpp │ │ │ ├── op_diff_meat.hpp │ │ │ ├── op_dot_bones.hpp │ │ │ ├── op_dot_meat.hpp │ │ │ ├── op_dotext_bones.hpp │ │ │ ├── op_dotext_meat.hpp │ │ │ ├── op_expmat_bones.hpp │ │ │ ├── op_expmat_meat.hpp │ │ │ ├── op_fft_bones.hpp │ │ │ ├── op_fft_meat.hpp │ │ │ ├── op_find_bones.hpp │ │ │ ├── op_find_meat.hpp │ │ │ ├── op_find_unique_bones.hpp │ │ │ ├── op_find_unique_meat.hpp │ │ │ ├── op_flip_bones.hpp │ │ │ ├── op_flip_meat.hpp │ │ │ ├── op_hist_bones.hpp │ │ │ ├── op_hist_meat.hpp │ │ │ ├── op_htrans_bones.hpp │ │ │ ├── op_htrans_meat.hpp │ │ │ ├── op_index_max_bones.hpp │ │ │ ├── op_index_max_meat.hpp │ │ │ ├── op_index_min_bones.hpp │ │ │ ├── op_index_min_meat.hpp │ │ │ ├── op_inv_bones.hpp │ │ │ ├── op_inv_meat.hpp │ │ │ ├── op_logmat_bones.hpp │ │ │ ├── op_logmat_meat.hpp │ │ │ ├── op_max_bones.hpp │ │ │ ├── op_max_meat.hpp │ │ │ ├── op_mean_bones.hpp │ │ │ ├── op_mean_meat.hpp │ │ │ ├── op_median_bones.hpp │ │ │ ├── op_median_meat.hpp │ │ │ ├── op_min_bones.hpp │ │ │ ├── op_min_meat.hpp │ │ │ ├── op_misc_bones.hpp │ │ │ ├── op_misc_meat.hpp │ │ │ ├── op_nonzeros_bones.hpp │ │ │ ├── op_nonzeros_meat.hpp │ │ │ ├── op_norm_bones.hpp │ │ │ ├── op_norm_meat.hpp │ │ │ ├── op_normalise_bones.hpp │ │ │ ├── op_normalise_meat.hpp │ │ │ ├── op_orth_null_bones.hpp │ │ │ ├── op_orth_null_meat.hpp │ │ │ ├── op_pinv_bones.hpp │ │ │ ├── op_pinv_meat.hpp │ │ │ ├── op_powmat_bones.hpp │ │ │ ├── op_powmat_meat.hpp │ │ │ ├── op_princomp_bones.hpp │ │ │ ├── op_princomp_meat.hpp │ │ │ ├── op_prod_bones.hpp │ │ │ ├── op_prod_meat.hpp │ │ │ ├── op_range_bones.hpp │ │ │ ├── op_range_meat.hpp │ │ │ ├── op_relational_bones.hpp │ │ │ ├── op_relational_meat.hpp │ │ │ ├── op_repelem_bones.hpp │ │ │ ├── op_repelem_meat.hpp │ │ │ ├── op_repmat_bones.hpp │ │ │ ├── op_repmat_meat.hpp │ │ │ ├── op_reshape_bones.hpp │ │ │ ├── op_reshape_meat.hpp │ │ │ ├── op_resize_bones.hpp │ │ │ ├── op_resize_meat.hpp │ │ │ ├── op_reverse_bones.hpp │ │ │ ├── op_reverse_meat.hpp │ │ │ ├── op_roots_bones.hpp │ │ │ ├── op_roots_meat.hpp │ │ │ ├── op_shift_bones.hpp │ │ │ ├── op_shift_meat.hpp │ │ │ ├── op_shuffle_bones.hpp │ │ │ ├── op_shuffle_meat.hpp │ │ │ ├── op_sort_bones.hpp │ │ │ ├── op_sort_index_bones.hpp │ │ │ ├── op_sort_index_meat.hpp │ │ │ ├── op_sort_meat.hpp │ │ │ ├── op_sp_minus_bones.hpp │ │ │ ├── op_sp_minus_meat.hpp │ │ │ ├── op_sp_plus_bones.hpp │ │ │ ├── op_sp_plus_meat.hpp │ │ │ ├── op_sqrtmat_bones.hpp │ │ │ ├── op_sqrtmat_meat.hpp │ │ │ ├── op_stddev_bones.hpp │ │ │ ├── op_stddev_meat.hpp │ │ │ ├── op_strans_bones.hpp │ │ │ ├── op_strans_meat.hpp │ │ │ ├── op_sum_bones.hpp │ │ │ ├── op_sum_meat.hpp │ │ │ ├── op_symmat_bones.hpp │ │ │ ├── op_symmat_meat.hpp │ │ │ ├── op_toeplitz_bones.hpp │ │ │ ├── op_toeplitz_meat.hpp │ │ │ ├── op_trimat_bones.hpp │ │ │ ├── op_trimat_meat.hpp │ │ │ ├── op_unique_bones.hpp │ │ │ ├── op_unique_meat.hpp │ │ │ ├── op_var_bones.hpp │ │ │ ├── op_var_meat.hpp │ │ │ ├── op_vectorise_bones.hpp │ │ │ ├── op_vectorise_meat.hpp │ │ │ ├── op_wishrnd_bones.hpp │ │ │ ├── op_wishrnd_meat.hpp │ │ │ ├── operator_cube_div.hpp │ │ │ ├── operator_cube_minus.hpp │ │ │ ├── operator_cube_plus.hpp │ │ │ ├── operator_cube_relational.hpp │ │ │ ├── operator_cube_schur.hpp │ │ │ ├── operator_cube_times.hpp │ │ │ ├── operator_div.hpp │ │ │ ├── operator_minus.hpp │ │ │ ├── operator_ostream.hpp │ │ │ ├── operator_plus.hpp │ │ │ ├── operator_relational.hpp │ │ │ ├── operator_schur.hpp │ │ │ ├── operator_times.hpp │ │ │ ├── podarray_bones.hpp │ │ │ ├── podarray_meat.hpp │ │ │ ├── promote_type.hpp │ │ │ ├── restrictors.hpp │ │ │ ├── running_stat_bones.hpp │ │ │ ├── running_stat_meat.hpp │ │ │ ├── running_stat_vec_bones.hpp │ │ │ ├── running_stat_vec_meat.hpp │ │ │ ├── sp_auxlib_bones.hpp │ │ │ ├── sp_auxlib_meat.hpp │ │ │ ├── span.hpp │ │ │ ├── spdiagview_bones.hpp │ │ │ ├── spdiagview_meat.hpp │ │ │ ├── spglue_elem_helper_bones.hpp │ │ │ ├── spglue_elem_helper_meat.hpp │ │ │ ├── spglue_join_bones.hpp │ │ │ ├── spglue_join_meat.hpp │ │ │ ├── spglue_kron_bones.hpp │ │ │ ├── spglue_kron_meat.hpp │ │ │ ├── spglue_max_bones.hpp │ │ │ ├── spglue_max_meat.hpp │ │ │ ├── spglue_merge_bones.hpp │ │ │ ├── spglue_merge_meat.hpp │ │ │ ├── spglue_min_bones.hpp │ │ │ ├── spglue_min_meat.hpp │ │ │ ├── spglue_minus_bones.hpp │ │ │ ├── spglue_minus_meat.hpp │ │ │ ├── spglue_plus_bones.hpp │ │ │ ├── spglue_plus_meat.hpp │ │ │ ├── spglue_relational_bones.hpp │ │ │ ├── spglue_relational_meat.hpp │ │ │ ├── spglue_schur_bones.hpp │ │ │ ├── spglue_schur_meat.hpp │ │ │ ├── spglue_times_bones.hpp │ │ │ ├── spglue_times_meat.hpp │ │ │ ├── spop_diagmat_bones.hpp │ │ │ ├── spop_diagmat_meat.hpp │ │ │ ├── spop_htrans_bones.hpp │ │ │ ├── spop_htrans_meat.hpp │ │ │ ├── spop_max_bones.hpp │ │ │ ├── spop_max_meat.hpp │ │ │ ├── spop_mean_bones.hpp │ │ │ ├── spop_mean_meat.hpp │ │ │ ├── spop_min_bones.hpp │ │ │ ├── spop_min_meat.hpp │ │ │ ├── spop_misc_bones.hpp │ │ │ ├── spop_misc_meat.hpp │ │ │ ├── spop_normalise_bones.hpp │ │ │ ├── spop_normalise_meat.hpp │ │ │ ├── spop_repmat_bones.hpp │ │ │ ├── spop_repmat_meat.hpp │ │ │ ├── spop_reverse_bones.hpp │ │ │ ├── spop_reverse_meat.hpp │ │ │ ├── spop_strans_bones.hpp │ │ │ ├── spop_strans_meat.hpp │ │ │ ├── spop_sum_bones.hpp │ │ │ ├── spop_sum_meat.hpp │ │ │ ├── spop_symmat_bones.hpp │ │ │ ├── spop_symmat_meat.hpp │ │ │ ├── spop_trimat_bones.hpp │ │ │ ├── spop_trimat_meat.hpp │ │ │ ├── spop_var_bones.hpp │ │ │ ├── spop_var_meat.hpp │ │ │ ├── spop_vectorise_bones.hpp │ │ │ ├── spop_vectorise_meat.hpp │ │ │ ├── strip.hpp │ │ │ ├── subview_bones.hpp │ │ │ ├── subview_cube_bones.hpp │ │ │ ├── subview_cube_each_bones.hpp │ │ │ ├── subview_cube_each_meat.hpp │ │ │ ├── subview_cube_meat.hpp │ │ │ ├── subview_cube_slices_bones.hpp │ │ │ ├── subview_cube_slices_meat.hpp │ │ │ ├── subview_each_bones.hpp │ │ │ ├── subview_each_meat.hpp │ │ │ ├── subview_elem1_bones.hpp │ │ │ ├── subview_elem1_meat.hpp │ │ │ ├── subview_elem2_bones.hpp │ │ │ ├── subview_elem2_meat.hpp │ │ │ ├── subview_field_bones.hpp │ │ │ ├── subview_field_meat.hpp │ │ │ ├── subview_meat.hpp │ │ │ ├── sympd_helper.hpp │ │ │ ├── traits.hpp │ │ │ ├── translate_arpack.hpp │ │ │ ├── translate_atlas.hpp │ │ │ ├── translate_blas.hpp │ │ │ ├── translate_lapack.hpp │ │ │ ├── translate_superlu.hpp │ │ │ ├── trimat_helper.hpp │ │ │ ├── typedef_elem.hpp │ │ │ ├── typedef_elem_check.hpp │ │ │ ├── typedef_mat.hpp │ │ │ ├── typedef_mat_fixed.hpp │ │ │ ├── unwrap.hpp │ │ │ ├── unwrap_cube.hpp │ │ │ ├── unwrap_spmat.hpp │ │ │ ├── upgrade_val.hpp │ │ │ ├── wall_clock_bones.hpp │ │ │ ├── wall_clock_meat.hpp │ │ │ ├── xtrans_mat_bones.hpp │ │ │ ├── xtrans_mat_meat.hpp │ │ │ ├── xvec_htrans_bones.hpp │ │ │ └── xvec_htrans_meat.hpp │ │ └── optim-master │ │ ├── LICENSE │ │ ├── NOTICE.txt │ │ ├── README.md │ │ └── header_only_version │ │ ├── constrained │ │ └── sumt.hpp │ │ ├── line_search │ │ └── more_thuente.hpp │ │ ├── misc │ │ ├── determine_bounds_type.hpp │ │ ├── error_reporting.hpp │ │ ├── error_reporting.ipp │ │ ├── jacobian_adjust.hpp │ │ ├── matrix_ops │ │ │ ├── abs.hpp │ │ │ ├── abs_max.hpp │ │ │ ├── access.hpp │ │ │ ├── accu.hpp │ │ │ ├── array_add.hpp │ │ │ ├── array_div.hpp │ │ │ ├── array_mult.hpp │ │ │ ├── as_scalar.hpp │ │ │ ├── cos.hpp │ │ │ ├── cout.hpp │ │ │ ├── diagmat.hpp │ │ │ ├── diagvec.hpp │ │ │ ├── dot.hpp │ │ │ ├── endl.hpp │ │ │ ├── eval.hpp │ │ │ ├── exp.hpp │ │ │ ├── eye.hpp │ │ │ ├── get_sort_index.hpp │ │ │ ├── hadamard.hpp │ │ │ ├── index_min.hpp │ │ │ ├── inv.hpp │ │ │ ├── is_finite.hpp │ │ │ ├── log.hpp │ │ │ ├── max.hpp │ │ │ ├── min.hpp │ │ │ ├── ncol.hpp │ │ │ ├── norm.hpp │ │ │ ├── ones.hpp │ │ │ ├── pow.hpp │ │ │ ├── randi.hpp │ │ │ ├── randn.hpp │ │ │ ├── randu.hpp │ │ │ ├── reset_negative_values.hpp │ │ │ ├── set_size.hpp │ │ │ ├── size.hpp │ │ │ ├── solve.hpp │ │ │ ├── sqrt.hpp │ │ │ ├── sum.hpp │ │ │ ├── transpose.hpp │ │ │ └── zeros.hpp │ │ ├── misc.hpp │ │ ├── numerical_gradient.hpp │ │ ├── numerical_hessian.hpp │ │ ├── optim_matdefs.hpp │ │ ├── optim_options.hpp │ │ ├── optim_structs.hpp │ │ ├── optim_trace.hpp │ │ ├── transform_vals.hpp │ │ ├── unit_vec.hpp │ │ └── unit_vec.ipp │ │ ├── optim.hpp │ │ ├── unconstrained │ │ ├── bfgs.hpp │ │ ├── cg.hpp │ │ ├── de.hpp │ │ ├── de_prmm.hpp │ │ ├── gd.hpp │ │ ├── gd.ipp │ │ ├── lbfgs.hpp │ │ ├── newton.hpp │ │ ├── nm.hpp │ │ ├── pso.hpp │ │ └── pso_dv.hpp │ │ └── zeros │ │ ├── broyden.hpp │ │ └── broyden_df.hpp │ ├── man │ ├── Data.Rd │ ├── rego-package.Rd │ └── regpred.Rd │ └── src │ ├── Makevars │ ├── Makevars.win │ └── init.c ├── README.md ├── c++ ├── functions.cpp └── functions.h ├── compile ├── compile-R.sh ├── compile-cpp.sh └── compile-py.sh ├── data ├── Data_air.csv └── Data_sim_1000.csv ├── img └── rego.png ├── libs ├── armadillo │ ├── LICENSE.txt │ ├── NOTICE.txt │ ├── README.md │ ├── VERSION.txt │ └── include │ │ ├── armadillo │ │ └── armadillo_bits │ │ ├── BaseCube_bones.hpp │ │ ├── BaseCube_meat.hpp │ │ ├── Base_bones.hpp │ │ ├── Base_meat.hpp │ │ ├── Col_bones.hpp │ │ ├── Col_meat.hpp │ │ ├── CubeToMatOp_bones.hpp │ │ ├── CubeToMatOp_meat.hpp │ │ ├── Cube_bones.hpp │ │ ├── Cube_meat.hpp │ │ ├── GenCube_bones.hpp │ │ ├── GenCube_meat.hpp │ │ ├── GenSpecialiser.hpp │ │ ├── Gen_bones.hpp │ │ ├── Gen_meat.hpp │ │ ├── GlueCube_bones.hpp │ │ ├── GlueCube_meat.hpp │ │ ├── Glue_bones.hpp │ │ ├── Glue_meat.hpp │ │ ├── MapMat_bones.hpp │ │ ├── MapMat_meat.hpp │ │ ├── Mat_bones.hpp │ │ ├── Mat_meat.hpp │ │ ├── OpCube_bones.hpp │ │ ├── OpCube_meat.hpp │ │ ├── Op_bones.hpp │ │ ├── Op_meat.hpp │ │ ├── Proxy.hpp │ │ ├── ProxyCube.hpp │ │ ├── Row_bones.hpp │ │ ├── Row_meat.hpp │ │ ├── SizeCube_bones.hpp │ │ ├── SizeCube_meat.hpp │ │ ├── SizeMat_bones.hpp │ │ ├── SizeMat_meat.hpp │ │ ├── SpBase_bones.hpp │ │ ├── SpBase_meat.hpp │ │ ├── SpCol_bones.hpp │ │ ├── SpCol_meat.hpp │ │ ├── SpGlue_bones.hpp │ │ ├── SpGlue_meat.hpp │ │ ├── SpMat_bones.hpp │ │ ├── SpMat_iterators_meat.hpp │ │ ├── SpMat_meat.hpp │ │ ├── SpOp_bones.hpp │ │ ├── SpOp_meat.hpp │ │ ├── SpProxy.hpp │ │ ├── SpRow_bones.hpp │ │ ├── SpRow_meat.hpp │ │ ├── SpSubview_bones.hpp │ │ ├── SpSubview_iterators_meat.hpp │ │ ├── SpSubview_meat.hpp │ │ ├── SpToDOp_bones.hpp │ │ ├── SpToDOp_meat.hpp │ │ ├── SpValProxy_bones.hpp │ │ ├── SpValProxy_meat.hpp │ │ ├── access.hpp │ │ ├── arma_cmath.hpp │ │ ├── arma_config.hpp │ │ ├── arma_forward.hpp │ │ ├── arma_ostream_bones.hpp │ │ ├── arma_ostream_meat.hpp │ │ ├── arma_rel_comparators.hpp │ │ ├── arma_rng.hpp │ │ ├── arma_rng_cxx11.hpp │ │ ├── arma_rng_cxx98.hpp │ │ ├── arma_static_check.hpp │ │ ├── arma_str.hpp │ │ ├── arma_version.hpp │ │ ├── arrayops_bones.hpp │ │ ├── arrayops_meat.hpp │ │ ├── auxlib_bones.hpp │ │ ├── auxlib_meat.hpp │ │ ├── band_helper.hpp │ │ ├── compiler_extra.hpp │ │ ├── compiler_setup.hpp │ │ ├── compiler_setup_post.hpp │ │ ├── cond_rel_bones.hpp │ │ ├── cond_rel_meat.hpp │ │ ├── config.hpp │ │ ├── config.hpp.cmake │ │ ├── constants.hpp │ │ ├── constants_old.hpp │ │ ├── csv_name.hpp │ │ ├── debug.hpp │ │ ├── def_arpack.hpp │ │ ├── def_atlas.hpp │ │ ├── def_blas.hpp │ │ ├── def_hdf5.hpp │ │ ├── def_lapack.hpp │ │ ├── def_superlu.hpp │ │ ├── diagmat_proxy.hpp │ │ ├── diagview_bones.hpp │ │ ├── diagview_meat.hpp │ │ ├── diskio_bones.hpp │ │ ├── diskio_meat.hpp │ │ ├── distr_param.hpp │ │ ├── eGlueCube_bones.hpp │ │ ├── eGlueCube_meat.hpp │ │ ├── eGlue_bones.hpp │ │ ├── eGlue_meat.hpp │ │ ├── eOpCube_bones.hpp │ │ ├── eOpCube_meat.hpp │ │ ├── eOp_bones.hpp │ │ ├── eOp_meat.hpp │ │ ├── eglue_core_bones.hpp │ │ ├── eglue_core_meat.hpp │ │ ├── eop_aux.hpp │ │ ├── eop_core_bones.hpp │ │ ├── eop_core_meat.hpp │ │ ├── fft_engine.hpp │ │ ├── field_bones.hpp │ │ ├── field_meat.hpp │ │ ├── fn_accu.hpp │ │ ├── fn_all.hpp │ │ ├── fn_any.hpp │ │ ├── fn_approx_equal.hpp │ │ ├── fn_as_scalar.hpp │ │ ├── fn_chi2rnd.hpp │ │ ├── fn_chol.hpp │ │ ├── fn_clamp.hpp │ │ ├── fn_cond.hpp │ │ ├── fn_conv.hpp │ │ ├── fn_conv_to.hpp │ │ ├── fn_cor.hpp │ │ ├── fn_cov.hpp │ │ ├── fn_cross.hpp │ │ ├── fn_cumprod.hpp │ │ ├── fn_cumsum.hpp │ │ ├── fn_det.hpp │ │ ├── fn_diagmat.hpp │ │ ├── fn_diagvec.hpp │ │ ├── fn_diff.hpp │ │ ├── fn_dot.hpp │ │ ├── fn_eig_gen.hpp │ │ ├── fn_eig_pair.hpp │ │ ├── fn_eig_sym.hpp │ │ ├── fn_eigs_gen.hpp │ │ ├── fn_eigs_sym.hpp │ │ ├── fn_elem.hpp │ │ ├── fn_eps.hpp │ │ ├── fn_expmat.hpp │ │ ├── fn_eye.hpp │ │ ├── fn_fft.hpp │ │ ├── fn_fft2.hpp │ │ ├── fn_find.hpp │ │ ├── fn_find_unique.hpp │ │ ├── fn_flip.hpp │ │ ├── fn_hess.hpp │ │ ├── fn_hist.hpp │ │ ├── fn_histc.hpp │ │ ├── fn_index_max.hpp │ │ ├── fn_index_min.hpp │ │ ├── fn_inplace_strans.hpp │ │ ├── fn_inplace_trans.hpp │ │ ├── fn_interp1.hpp │ │ ├── fn_interp2.hpp │ │ ├── fn_intersect.hpp │ │ ├── fn_inv.hpp │ │ ├── fn_join.hpp │ │ ├── fn_kmeans.hpp │ │ ├── fn_kron.hpp │ │ ├── fn_log_det.hpp │ │ ├── fn_log_normpdf.hpp │ │ ├── fn_logmat.hpp │ │ ├── fn_lu.hpp │ │ ├── fn_max.hpp │ │ ├── fn_mean.hpp │ │ ├── fn_median.hpp │ │ ├── fn_min.hpp │ │ ├── fn_misc.hpp │ │ ├── fn_mvnrnd.hpp │ │ ├── fn_n_unique.hpp │ │ ├── fn_nonzeros.hpp │ │ ├── fn_norm.hpp │ │ ├── fn_normalise.hpp │ │ ├── fn_normcdf.hpp │ │ ├── fn_normpdf.hpp │ │ ├── fn_numel.hpp │ │ ├── fn_ones.hpp │ │ ├── fn_orth_null.hpp │ │ ├── fn_pinv.hpp │ │ ├── fn_polyfit.hpp │ │ ├── fn_polyval.hpp │ │ ├── fn_powmat.hpp │ │ ├── fn_princomp.hpp │ │ ├── fn_prod.hpp │ │ ├── fn_qr.hpp │ │ ├── fn_quantile.hpp │ │ ├── fn_qz.hpp │ │ ├── fn_randg.hpp │ │ ├── fn_randi.hpp │ │ ├── fn_randn.hpp │ │ ├── fn_randperm.hpp │ │ ├── fn_randu.hpp │ │ ├── fn_range.hpp │ │ ├── fn_rank.hpp │ │ ├── fn_regspace.hpp │ │ ├── fn_repelem.hpp │ │ ├── fn_repmat.hpp │ │ ├── fn_reshape.hpp │ │ ├── fn_resize.hpp │ │ ├── fn_reverse.hpp │ │ ├── fn_roots.hpp │ │ ├── fn_schur.hpp │ │ ├── fn_shift.hpp │ │ ├── fn_shuffle.hpp │ │ ├── fn_size.hpp │ │ ├── fn_solve.hpp │ │ ├── fn_sort.hpp │ │ ├── fn_sort_index.hpp │ │ ├── fn_speye.hpp │ │ ├── fn_spones.hpp │ │ ├── fn_sprandn.hpp │ │ ├── fn_sprandu.hpp │ │ ├── fn_spsolve.hpp │ │ ├── fn_sqrtmat.hpp │ │ ├── fn_stddev.hpp │ │ ├── fn_strans.hpp │ │ ├── fn_sum.hpp │ │ ├── fn_svd.hpp │ │ ├── fn_svds.hpp │ │ ├── fn_syl_lyap.hpp │ │ ├── fn_symmat.hpp │ │ ├── fn_toeplitz.hpp │ │ ├── fn_trace.hpp │ │ ├── fn_trans.hpp │ │ ├── fn_trapz.hpp │ │ ├── fn_trig.hpp │ │ ├── fn_trimat.hpp │ │ ├── fn_trunc_exp.hpp │ │ ├── fn_trunc_log.hpp │ │ ├── fn_unique.hpp │ │ ├── fn_var.hpp │ │ ├── fn_vectorise.hpp │ │ ├── fn_wishrnd.hpp │ │ ├── fn_zeros.hpp │ │ ├── glue_affmul_bones.hpp │ │ ├── glue_affmul_meat.hpp │ │ ├── glue_atan2_bones.hpp │ │ ├── glue_atan2_meat.hpp │ │ ├── glue_conv_bones.hpp │ │ ├── glue_conv_meat.hpp │ │ ├── glue_cor_bones.hpp │ │ ├── glue_cor_meat.hpp │ │ ├── glue_cov_bones.hpp │ │ ├── glue_cov_meat.hpp │ │ ├── glue_cross_bones.hpp │ │ ├── glue_cross_meat.hpp │ │ ├── glue_hist_bones.hpp │ │ ├── glue_hist_meat.hpp │ │ ├── glue_histc_bones.hpp │ │ ├── glue_histc_meat.hpp │ │ ├── glue_hypot_bones.hpp │ │ ├── glue_hypot_meat.hpp │ │ ├── glue_intersect_bones.hpp │ │ ├── glue_intersect_meat.hpp │ │ ├── glue_join_bones.hpp │ │ ├── glue_join_meat.hpp │ │ ├── glue_kron_bones.hpp │ │ ├── glue_kron_meat.hpp │ │ ├── glue_max_bones.hpp │ │ ├── glue_max_meat.hpp │ │ ├── glue_min_bones.hpp │ │ ├── glue_min_meat.hpp │ │ ├── glue_mixed_bones.hpp │ │ ├── glue_mixed_meat.hpp │ │ ├── glue_mvnrnd_bones.hpp │ │ ├── glue_mvnrnd_meat.hpp │ │ ├── glue_polyfit_bones.hpp │ │ ├── glue_polyfit_meat.hpp │ │ ├── glue_polyval_bones.hpp │ │ ├── glue_polyval_meat.hpp │ │ ├── glue_quantile_bones.hpp │ │ ├── glue_quantile_meat.hpp │ │ ├── glue_relational_bones.hpp │ │ ├── glue_relational_meat.hpp │ │ ├── glue_solve_bones.hpp │ │ ├── glue_solve_meat.hpp │ │ ├── glue_times_bones.hpp │ │ ├── glue_times_meat.hpp │ │ ├── glue_toeplitz_bones.hpp │ │ ├── glue_toeplitz_meat.hpp │ │ ├── glue_trapz_bones.hpp │ │ ├── glue_trapz_meat.hpp │ │ ├── gmm_diag_bones.hpp │ │ ├── gmm_diag_meat.hpp │ │ ├── gmm_full_bones.hpp │ │ ├── gmm_full_meat.hpp │ │ ├── gmm_misc_bones.hpp │ │ ├── gmm_misc_meat.hpp │ │ ├── hdf5_misc.hpp │ │ ├── hdf5_name.hpp │ │ ├── include_atlas.hpp │ │ ├── include_hdf5.hpp │ │ ├── include_superlu.hpp │ │ ├── injector_bones.hpp │ │ ├── injector_meat.hpp │ │ ├── memory.hpp │ │ ├── mp_misc.hpp │ │ ├── mtGlueCube_bones.hpp │ │ ├── mtGlueCube_meat.hpp │ │ ├── mtGlue_bones.hpp │ │ ├── mtGlue_meat.hpp │ │ ├── mtOpCube_bones.hpp │ │ ├── mtOpCube_meat.hpp │ │ ├── mtOp_bones.hpp │ │ ├── mtOp_meat.hpp │ │ ├── mtSpGlue_bones.hpp │ │ ├── mtSpGlue_meat.hpp │ │ ├── mtSpOp_bones.hpp │ │ ├── mtSpOp_meat.hpp │ │ ├── mul_gemm.hpp │ │ ├── mul_gemm_mixed.hpp │ │ ├── mul_gemv.hpp │ │ ├── mul_herk.hpp │ │ ├── mul_syrk.hpp │ │ ├── newarp_DenseGenMatProd_bones.hpp │ │ ├── newarp_DenseGenMatProd_meat.hpp │ │ ├── newarp_DoubleShiftQR_bones.hpp │ │ ├── newarp_DoubleShiftQR_meat.hpp │ │ ├── newarp_EigsSelect.hpp │ │ ├── newarp_GenEigsSolver_bones.hpp │ │ ├── newarp_GenEigsSolver_meat.hpp │ │ ├── newarp_SortEigenvalue.hpp │ │ ├── newarp_SparseGenMatProd_bones.hpp │ │ ├── newarp_SparseGenMatProd_meat.hpp │ │ ├── newarp_SymEigsSolver_bones.hpp │ │ ├── newarp_SymEigsSolver_meat.hpp │ │ ├── newarp_TridiagEigen_bones.hpp │ │ ├── newarp_TridiagEigen_meat.hpp │ │ ├── newarp_UpperHessenbergEigen_bones.hpp │ │ ├── newarp_UpperHessenbergEigen_meat.hpp │ │ ├── newarp_UpperHessenbergQR_bones.hpp │ │ ├── newarp_UpperHessenbergQR_meat.hpp │ │ ├── newarp_cx_attrib.hpp │ │ ├── op_all_bones.hpp │ │ ├── op_all_meat.hpp │ │ ├── op_any_bones.hpp │ │ ├── op_any_meat.hpp │ │ ├── op_chi2rnd_bones.hpp │ │ ├── op_chi2rnd_meat.hpp │ │ ├── op_chol_bones.hpp │ │ ├── op_chol_meat.hpp │ │ ├── op_clamp_bones.hpp │ │ ├── op_clamp_meat.hpp │ │ ├── op_cond_bones.hpp │ │ ├── op_cond_meat.hpp │ │ ├── op_cor_bones.hpp │ │ ├── op_cor_meat.hpp │ │ ├── op_cov_bones.hpp │ │ ├── op_cov_meat.hpp │ │ ├── op_cumprod_bones.hpp │ │ ├── op_cumprod_meat.hpp │ │ ├── op_cumsum_bones.hpp │ │ ├── op_cumsum_meat.hpp │ │ ├── op_cx_scalar_bones.hpp │ │ ├── op_cx_scalar_meat.hpp │ │ ├── op_diagmat_bones.hpp │ │ ├── op_diagmat_meat.hpp │ │ ├── op_diagvec_bones.hpp │ │ ├── op_diagvec_meat.hpp │ │ ├── op_diff_bones.hpp │ │ ├── op_diff_meat.hpp │ │ ├── op_dot_bones.hpp │ │ ├── op_dot_meat.hpp │ │ ├── op_dotext_bones.hpp │ │ ├── op_dotext_meat.hpp │ │ ├── op_expmat_bones.hpp │ │ ├── op_expmat_meat.hpp │ │ ├── op_fft_bones.hpp │ │ ├── op_fft_meat.hpp │ │ ├── op_find_bones.hpp │ │ ├── op_find_meat.hpp │ │ ├── op_find_unique_bones.hpp │ │ ├── op_find_unique_meat.hpp │ │ ├── op_flip_bones.hpp │ │ ├── op_flip_meat.hpp │ │ ├── op_hist_bones.hpp │ │ ├── op_hist_meat.hpp │ │ ├── op_htrans_bones.hpp │ │ ├── op_htrans_meat.hpp │ │ ├── op_index_max_bones.hpp │ │ ├── op_index_max_meat.hpp │ │ ├── op_index_min_bones.hpp │ │ ├── op_index_min_meat.hpp │ │ ├── op_inv_bones.hpp │ │ ├── op_inv_meat.hpp │ │ ├── op_logmat_bones.hpp │ │ ├── op_logmat_meat.hpp │ │ ├── op_max_bones.hpp │ │ ├── op_max_meat.hpp │ │ ├── op_mean_bones.hpp │ │ ├── op_mean_meat.hpp │ │ ├── op_median_bones.hpp │ │ ├── op_median_meat.hpp │ │ ├── op_min_bones.hpp │ │ ├── op_min_meat.hpp │ │ ├── op_misc_bones.hpp │ │ ├── op_misc_meat.hpp │ │ ├── op_nonzeros_bones.hpp │ │ ├── op_nonzeros_meat.hpp │ │ ├── op_norm_bones.hpp │ │ ├── op_norm_meat.hpp │ │ ├── op_normalise_bones.hpp │ │ ├── op_normalise_meat.hpp │ │ ├── op_orth_null_bones.hpp │ │ ├── op_orth_null_meat.hpp │ │ ├── op_pinv_bones.hpp │ │ ├── op_pinv_meat.hpp │ │ ├── op_powmat_bones.hpp │ │ ├── op_powmat_meat.hpp │ │ ├── op_princomp_bones.hpp │ │ ├── op_princomp_meat.hpp │ │ ├── op_prod_bones.hpp │ │ ├── op_prod_meat.hpp │ │ ├── op_range_bones.hpp │ │ ├── op_range_meat.hpp │ │ ├── op_relational_bones.hpp │ │ ├── op_relational_meat.hpp │ │ ├── op_repelem_bones.hpp │ │ ├── op_repelem_meat.hpp │ │ ├── op_repmat_bones.hpp │ │ ├── op_repmat_meat.hpp │ │ ├── op_reshape_bones.hpp │ │ ├── op_reshape_meat.hpp │ │ ├── op_resize_bones.hpp │ │ ├── op_resize_meat.hpp │ │ ├── op_reverse_bones.hpp │ │ ├── op_reverse_meat.hpp │ │ ├── op_roots_bones.hpp │ │ ├── op_roots_meat.hpp │ │ ├── op_shift_bones.hpp │ │ ├── op_shift_meat.hpp │ │ ├── op_shuffle_bones.hpp │ │ ├── op_shuffle_meat.hpp │ │ ├── op_sort_bones.hpp │ │ ├── op_sort_index_bones.hpp │ │ ├── op_sort_index_meat.hpp │ │ ├── op_sort_meat.hpp │ │ ├── op_sp_minus_bones.hpp │ │ ├── op_sp_minus_meat.hpp │ │ ├── op_sp_plus_bones.hpp │ │ ├── op_sp_plus_meat.hpp │ │ ├── op_sqrtmat_bones.hpp │ │ ├── op_sqrtmat_meat.hpp │ │ ├── op_stddev_bones.hpp │ │ ├── op_stddev_meat.hpp │ │ ├── op_strans_bones.hpp │ │ ├── op_strans_meat.hpp │ │ ├── op_sum_bones.hpp │ │ ├── op_sum_meat.hpp │ │ ├── op_symmat_bones.hpp │ │ ├── op_symmat_meat.hpp │ │ ├── op_toeplitz_bones.hpp │ │ ├── op_toeplitz_meat.hpp │ │ ├── op_trimat_bones.hpp │ │ ├── op_trimat_meat.hpp │ │ ├── op_unique_bones.hpp │ │ ├── op_unique_meat.hpp │ │ ├── op_var_bones.hpp │ │ ├── op_var_meat.hpp │ │ ├── op_vectorise_bones.hpp │ │ ├── op_vectorise_meat.hpp │ │ ├── op_wishrnd_bones.hpp │ │ ├── op_wishrnd_meat.hpp │ │ ├── operator_cube_div.hpp │ │ ├── operator_cube_minus.hpp │ │ ├── operator_cube_plus.hpp │ │ ├── operator_cube_relational.hpp │ │ ├── operator_cube_schur.hpp │ │ ├── operator_cube_times.hpp │ │ ├── operator_div.hpp │ │ ├── operator_minus.hpp │ │ ├── operator_ostream.hpp │ │ ├── operator_plus.hpp │ │ ├── operator_relational.hpp │ │ ├── operator_schur.hpp │ │ ├── operator_times.hpp │ │ ├── podarray_bones.hpp │ │ ├── podarray_meat.hpp │ │ ├── promote_type.hpp │ │ ├── restrictors.hpp │ │ ├── running_stat_bones.hpp │ │ ├── running_stat_meat.hpp │ │ ├── running_stat_vec_bones.hpp │ │ ├── running_stat_vec_meat.hpp │ │ ├── sp_auxlib_bones.hpp │ │ ├── sp_auxlib_meat.hpp │ │ ├── span.hpp │ │ ├── spdiagview_bones.hpp │ │ ├── spdiagview_meat.hpp │ │ ├── spglue_elem_helper_bones.hpp │ │ ├── spglue_elem_helper_meat.hpp │ │ ├── spglue_join_bones.hpp │ │ ├── spglue_join_meat.hpp │ │ ├── spglue_kron_bones.hpp │ │ ├── spglue_kron_meat.hpp │ │ ├── spglue_max_bones.hpp │ │ ├── spglue_max_meat.hpp │ │ ├── spglue_merge_bones.hpp │ │ ├── spglue_merge_meat.hpp │ │ ├── spglue_min_bones.hpp │ │ ├── spglue_min_meat.hpp │ │ ├── spglue_minus_bones.hpp │ │ ├── spglue_minus_meat.hpp │ │ ├── spglue_plus_bones.hpp │ │ ├── spglue_plus_meat.hpp │ │ ├── spglue_relational_bones.hpp │ │ ├── spglue_relational_meat.hpp │ │ ├── spglue_schur_bones.hpp │ │ ├── spglue_schur_meat.hpp │ │ ├── spglue_times_bones.hpp │ │ ├── spglue_times_meat.hpp │ │ ├── spop_diagmat_bones.hpp │ │ ├── spop_diagmat_meat.hpp │ │ ├── spop_htrans_bones.hpp │ │ ├── spop_htrans_meat.hpp │ │ ├── spop_max_bones.hpp │ │ ├── spop_max_meat.hpp │ │ ├── spop_mean_bones.hpp │ │ ├── spop_mean_meat.hpp │ │ ├── spop_min_bones.hpp │ │ ├── spop_min_meat.hpp │ │ ├── spop_misc_bones.hpp │ │ ├── spop_misc_meat.hpp │ │ ├── spop_normalise_bones.hpp │ │ ├── spop_normalise_meat.hpp │ │ ├── spop_repmat_bones.hpp │ │ ├── spop_repmat_meat.hpp │ │ ├── spop_reverse_bones.hpp │ │ ├── spop_reverse_meat.hpp │ │ ├── spop_strans_bones.hpp │ │ ├── spop_strans_meat.hpp │ │ ├── spop_sum_bones.hpp │ │ ├── spop_sum_meat.hpp │ │ ├── spop_symmat_bones.hpp │ │ ├── spop_symmat_meat.hpp │ │ ├── spop_trimat_bones.hpp │ │ ├── spop_trimat_meat.hpp │ │ ├── spop_var_bones.hpp │ │ ├── spop_var_meat.hpp │ │ ├── spop_vectorise_bones.hpp │ │ ├── spop_vectorise_meat.hpp │ │ ├── strip.hpp │ │ ├── subview_bones.hpp │ │ ├── subview_cube_bones.hpp │ │ ├── subview_cube_each_bones.hpp │ │ ├── subview_cube_each_meat.hpp │ │ ├── subview_cube_meat.hpp │ │ ├── subview_cube_slices_bones.hpp │ │ ├── subview_cube_slices_meat.hpp │ │ ├── subview_each_bones.hpp │ │ ├── subview_each_meat.hpp │ │ ├── subview_elem1_bones.hpp │ │ ├── subview_elem1_meat.hpp │ │ ├── subview_elem2_bones.hpp │ │ ├── subview_elem2_meat.hpp │ │ ├── subview_field_bones.hpp │ │ ├── subview_field_meat.hpp │ │ ├── subview_meat.hpp │ │ ├── sympd_helper.hpp │ │ ├── traits.hpp │ │ ├── translate_arpack.hpp │ │ ├── translate_atlas.hpp │ │ ├── translate_blas.hpp │ │ ├── translate_lapack.hpp │ │ ├── translate_superlu.hpp │ │ ├── trimat_helper.hpp │ │ ├── typedef_elem.hpp │ │ ├── typedef_elem_check.hpp │ │ ├── typedef_mat.hpp │ │ ├── typedef_mat_fixed.hpp │ │ ├── unwrap.hpp │ │ ├── unwrap_cube.hpp │ │ ├── unwrap_spmat.hpp │ │ ├── upgrade_val.hpp │ │ ├── wall_clock_bones.hpp │ │ ├── wall_clock_meat.hpp │ │ ├── xtrans_mat_bones.hpp │ │ ├── xtrans_mat_meat.hpp │ │ ├── xvec_htrans_bones.hpp │ │ └── xvec_htrans_meat.hpp └── optim-master │ ├── LICENSE │ ├── NOTICE.txt │ ├── README.md │ └── header_only_version │ ├── constrained │ └── sumt.hpp │ ├── line_search │ └── more_thuente.hpp │ ├── misc │ ├── determine_bounds_type.hpp │ ├── error_reporting.hpp │ ├── error_reporting.ipp │ ├── jacobian_adjust.hpp │ ├── matrix_ops │ │ ├── abs.hpp │ │ ├── abs_max.hpp │ │ ├── access.hpp │ │ ├── accu.hpp │ │ ├── array_add.hpp │ │ ├── array_div.hpp │ │ ├── array_mult.hpp │ │ ├── as_scalar.hpp │ │ ├── cos.hpp │ │ ├── cout.hpp │ │ ├── diagmat.hpp │ │ ├── diagvec.hpp │ │ ├── dot.hpp │ │ ├── endl.hpp │ │ ├── eval.hpp │ │ ├── exp.hpp │ │ ├── eye.hpp │ │ ├── get_sort_index.hpp │ │ ├── hadamard.hpp │ │ ├── index_min.hpp │ │ ├── inv.hpp │ │ ├── is_finite.hpp │ │ ├── log.hpp │ │ ├── max.hpp │ │ ├── min.hpp │ │ ├── ncol.hpp │ │ ├── norm.hpp │ │ ├── ones.hpp │ │ ├── pow.hpp │ │ ├── randi.hpp │ │ ├── randn.hpp │ │ ├── randu.hpp │ │ ├── reset_negative_values.hpp │ │ ├── set_size.hpp │ │ ├── size.hpp │ │ ├── solve.hpp │ │ ├── sqrt.hpp │ │ ├── sum.hpp │ │ ├── transpose.hpp │ │ └── zeros.hpp │ ├── misc.hpp │ ├── numerical_gradient.hpp │ ├── numerical_hessian.hpp │ ├── optim_matdefs.hpp │ ├── optim_options.hpp │ ├── optim_structs.hpp │ ├── optim_trace.hpp │ ├── transform_vals.hpp │ ├── unit_vec.hpp │ └── unit_vec.ipp │ ├── optim.hpp │ ├── unconstrained │ ├── bfgs.hpp │ ├── cg.hpp │ ├── de.hpp │ ├── de_prmm.hpp │ ├── gd.hpp │ ├── gd.ipp │ ├── lbfgs.hpp │ ├── newton.hpp │ ├── nm.hpp │ ├── pso.hpp │ └── pso_dv.hpp │ └── zeros │ ├── broyden.hpp │ └── broyden_df.hpp ├── main ├── main.R ├── main.cpp └── main.py ├── python ├── LICENSE ├── LICENSES │ ├── ARMADILLO_LICENSE.txt │ ├── MATPLOTLIB_LICENCE.txt │ ├── NUMPY_LICENCE.txt │ └── PANDAS_LICENCE.txt ├── MANIFEST.in ├── PKG-INFO ├── README.md ├── pyproject.toml ├── requirements.txt ├── setup.cfg ├── setup.py └── src │ └── cypack │ ├── __init__.py │ ├── armadillo │ ├── LICENSE.txt │ ├── NOTICE.txt │ ├── README.md │ ├── VERSION.txt │ └── include │ │ ├── armadillo │ │ └── armadillo_bits │ │ ├── BaseCube_bones.hpp │ │ ├── BaseCube_meat.hpp │ │ ├── Base_bones.hpp │ │ ├── Base_meat.hpp │ │ ├── Col_bones.hpp │ │ ├── Col_meat.hpp │ │ ├── CubeToMatOp_bones.hpp │ │ ├── CubeToMatOp_meat.hpp │ │ ├── Cube_bones.hpp │ │ ├── Cube_meat.hpp │ │ ├── GenCube_bones.hpp │ │ ├── GenCube_meat.hpp │ │ ├── GenSpecialiser.hpp │ │ ├── Gen_bones.hpp │ │ ├── Gen_meat.hpp │ │ ├── GlueCube_bones.hpp │ │ ├── GlueCube_meat.hpp │ │ ├── Glue_bones.hpp │ │ ├── Glue_meat.hpp │ │ ├── MapMat_bones.hpp │ │ ├── MapMat_meat.hpp │ │ ├── Mat_bones.hpp │ │ ├── Mat_meat.hpp │ │ ├── OpCube_bones.hpp │ │ ├── OpCube_meat.hpp │ │ ├── Op_bones.hpp │ │ ├── Op_meat.hpp │ │ ├── Proxy.hpp │ │ ├── ProxyCube.hpp │ │ ├── Row_bones.hpp │ │ ├── Row_meat.hpp │ │ ├── SizeCube_bones.hpp │ │ ├── SizeCube_meat.hpp │ │ ├── SizeMat_bones.hpp │ │ ├── SizeMat_meat.hpp │ │ ├── SpBase_bones.hpp │ │ ├── SpBase_meat.hpp │ │ ├── SpCol_bones.hpp │ │ ├── SpCol_meat.hpp │ │ ├── SpGlue_bones.hpp │ │ ├── SpGlue_meat.hpp │ │ ├── SpMat_bones.hpp │ │ ├── SpMat_iterators_meat.hpp │ │ ├── SpMat_meat.hpp │ │ ├── SpOp_bones.hpp │ │ ├── SpOp_meat.hpp │ │ ├── SpProxy.hpp │ │ ├── SpRow_bones.hpp │ │ ├── SpRow_meat.hpp │ │ ├── SpSubview_bones.hpp │ │ ├── SpSubview_iterators_meat.hpp │ │ ├── SpSubview_meat.hpp │ │ ├── SpToDOp_bones.hpp │ │ ├── SpToDOp_meat.hpp │ │ ├── SpValProxy_bones.hpp │ │ ├── SpValProxy_meat.hpp │ │ ├── access.hpp │ │ ├── arma_cmath.hpp │ │ ├── arma_config.hpp │ │ ├── arma_forward.hpp │ │ ├── arma_ostream_bones.hpp │ │ ├── arma_ostream_meat.hpp │ │ ├── arma_rel_comparators.hpp │ │ ├── arma_rng.hpp │ │ ├── arma_rng_cxx11.hpp │ │ ├── arma_rng_cxx98.hpp │ │ ├── arma_static_check.hpp │ │ ├── arma_str.hpp │ │ ├── arma_version.hpp │ │ ├── arrayops_bones.hpp │ │ ├── arrayops_meat.hpp │ │ ├── auxlib_bones.hpp │ │ ├── auxlib_meat.hpp │ │ ├── band_helper.hpp │ │ ├── compiler_extra.hpp │ │ ├── compiler_setup.hpp │ │ ├── compiler_setup_post.hpp │ │ ├── cond_rel_bones.hpp │ │ ├── cond_rel_meat.hpp │ │ ├── config.hpp │ │ ├── config.hpp.cmake │ │ ├── constants.hpp │ │ ├── constants_old.hpp │ │ ├── csv_name.hpp │ │ ├── debug.hpp │ │ ├── def_arpack.hpp │ │ ├── def_atlas.hpp │ │ ├── def_blas.hpp │ │ ├── def_hdf5.hpp │ │ ├── def_lapack.hpp │ │ ├── def_superlu.hpp │ │ ├── diagmat_proxy.hpp │ │ ├── diagview_bones.hpp │ │ ├── diagview_meat.hpp │ │ ├── diskio_bones.hpp │ │ ├── diskio_meat.hpp │ │ ├── distr_param.hpp │ │ ├── eGlueCube_bones.hpp │ │ ├── eGlueCube_meat.hpp │ │ ├── eGlue_bones.hpp │ │ ├── eGlue_meat.hpp │ │ ├── eOpCube_bones.hpp │ │ ├── eOpCube_meat.hpp │ │ ├── eOp_bones.hpp │ │ ├── eOp_meat.hpp │ │ ├── eglue_core_bones.hpp │ │ ├── eglue_core_meat.hpp │ │ ├── eop_aux.hpp │ │ ├── eop_core_bones.hpp │ │ ├── eop_core_meat.hpp │ │ ├── fft_engine.hpp │ │ ├── field_bones.hpp │ │ ├── field_meat.hpp │ │ ├── fn_accu.hpp │ │ ├── fn_all.hpp │ │ ├── fn_any.hpp │ │ ├── fn_approx_equal.hpp │ │ ├── fn_as_scalar.hpp │ │ ├── fn_chi2rnd.hpp │ │ ├── fn_chol.hpp │ │ ├── fn_clamp.hpp │ │ ├── fn_cond.hpp │ │ ├── fn_conv.hpp │ │ ├── fn_conv_to.hpp │ │ ├── fn_cor.hpp │ │ ├── fn_cov.hpp │ │ ├── fn_cross.hpp │ │ ├── fn_cumprod.hpp │ │ ├── fn_cumsum.hpp │ │ ├── fn_det.hpp │ │ ├── fn_diagmat.hpp │ │ ├── fn_diagvec.hpp │ │ ├── fn_diff.hpp │ │ ├── fn_dot.hpp │ │ ├── fn_eig_gen.hpp │ │ ├── fn_eig_pair.hpp │ │ ├── fn_eig_sym.hpp │ │ ├── fn_eigs_gen.hpp │ │ ├── fn_eigs_sym.hpp │ │ ├── fn_elem.hpp │ │ ├── fn_eps.hpp │ │ ├── fn_expmat.hpp │ │ ├── fn_eye.hpp │ │ ├── fn_fft.hpp │ │ ├── fn_fft2.hpp │ │ ├── fn_find.hpp │ │ ├── fn_find_unique.hpp │ │ ├── fn_flip.hpp │ │ ├── fn_hess.hpp │ │ ├── fn_hist.hpp │ │ ├── fn_histc.hpp │ │ ├── fn_index_max.hpp │ │ ├── fn_index_min.hpp │ │ ├── fn_inplace_strans.hpp │ │ ├── fn_inplace_trans.hpp │ │ ├── fn_interp1.hpp │ │ ├── fn_interp2.hpp │ │ ├── fn_intersect.hpp │ │ ├── fn_inv.hpp │ │ ├── fn_join.hpp │ │ ├── fn_kmeans.hpp │ │ ├── fn_kron.hpp │ │ ├── fn_log_det.hpp │ │ ├── fn_log_normpdf.hpp │ │ ├── fn_logmat.hpp │ │ ├── fn_lu.hpp │ │ ├── fn_max.hpp │ │ ├── fn_mean.hpp │ │ ├── fn_median.hpp │ │ ├── fn_min.hpp │ │ ├── fn_misc.hpp │ │ ├── fn_mvnrnd.hpp │ │ ├── fn_n_unique.hpp │ │ ├── fn_nonzeros.hpp │ │ ├── fn_norm.hpp │ │ ├── fn_normalise.hpp │ │ ├── fn_normcdf.hpp │ │ ├── fn_normpdf.hpp │ │ ├── fn_numel.hpp │ │ ├── fn_ones.hpp │ │ ├── fn_orth_null.hpp │ │ ├── fn_pinv.hpp │ │ ├── fn_polyfit.hpp │ │ ├── fn_polyval.hpp │ │ ├── fn_powmat.hpp │ │ ├── fn_princomp.hpp │ │ ├── fn_prod.hpp │ │ ├── fn_qr.hpp │ │ ├── fn_quantile.hpp │ │ ├── fn_qz.hpp │ │ ├── fn_randg.hpp │ │ ├── fn_randi.hpp │ │ ├── fn_randn.hpp │ │ ├── fn_randperm.hpp │ │ ├── fn_randu.hpp │ │ ├── fn_range.hpp │ │ ├── fn_rank.hpp │ │ ├── fn_regspace.hpp │ │ ├── fn_repelem.hpp │ │ ├── fn_repmat.hpp │ │ ├── fn_reshape.hpp │ │ ├── fn_resize.hpp │ │ ├── fn_reverse.hpp │ │ ├── fn_roots.hpp │ │ ├── fn_schur.hpp │ │ ├── fn_shift.hpp │ │ ├── fn_shuffle.hpp │ │ ├── fn_size.hpp │ │ ├── fn_solve.hpp │ │ ├── fn_sort.hpp │ │ ├── fn_sort_index.hpp │ │ ├── fn_speye.hpp │ │ ├── fn_spones.hpp │ │ ├── fn_sprandn.hpp │ │ ├── fn_sprandu.hpp │ │ ├── fn_spsolve.hpp │ │ ├── fn_sqrtmat.hpp │ │ ├── fn_stddev.hpp │ │ ├── fn_strans.hpp │ │ ├── fn_sum.hpp │ │ ├── fn_svd.hpp │ │ ├── fn_svds.hpp │ │ ├── fn_syl_lyap.hpp │ │ ├── fn_symmat.hpp │ │ ├── fn_toeplitz.hpp │ │ ├── fn_trace.hpp │ │ ├── fn_trans.hpp │ │ ├── fn_trapz.hpp │ │ ├── fn_trig.hpp │ │ ├── fn_trimat.hpp │ │ ├── fn_trunc_exp.hpp │ │ ├── fn_trunc_log.hpp │ │ ├── fn_unique.hpp │ │ ├── fn_var.hpp │ │ ├── fn_vectorise.hpp │ │ ├── fn_wishrnd.hpp │ │ ├── fn_zeros.hpp │ │ ├── glue_affmul_bones.hpp │ │ ├── glue_affmul_meat.hpp │ │ ├── glue_atan2_bones.hpp │ │ ├── glue_atan2_meat.hpp │ │ ├── glue_conv_bones.hpp │ │ ├── glue_conv_meat.hpp │ │ ├── glue_cor_bones.hpp │ │ ├── glue_cor_meat.hpp │ │ ├── glue_cov_bones.hpp │ │ ├── glue_cov_meat.hpp │ │ ├── glue_cross_bones.hpp │ │ ├── glue_cross_meat.hpp │ │ ├── glue_hist_bones.hpp │ │ ├── glue_hist_meat.hpp │ │ ├── glue_histc_bones.hpp │ │ ├── glue_histc_meat.hpp │ │ ├── glue_hypot_bones.hpp │ │ ├── glue_hypot_meat.hpp │ │ ├── glue_intersect_bones.hpp │ │ ├── glue_intersect_meat.hpp │ │ ├── glue_join_bones.hpp │ │ ├── glue_join_meat.hpp │ │ ├── glue_kron_bones.hpp │ │ ├── glue_kron_meat.hpp │ │ ├── glue_max_bones.hpp │ │ ├── glue_max_meat.hpp │ │ ├── glue_min_bones.hpp │ │ ├── glue_min_meat.hpp │ │ ├── glue_mixed_bones.hpp │ │ ├── glue_mixed_meat.hpp │ │ ├── glue_mvnrnd_bones.hpp │ │ ├── glue_mvnrnd_meat.hpp │ │ ├── glue_polyfit_bones.hpp │ │ ├── glue_polyfit_meat.hpp │ │ ├── glue_polyval_bones.hpp │ │ ├── glue_polyval_meat.hpp │ │ ├── glue_quantile_bones.hpp │ │ ├── glue_quantile_meat.hpp │ │ ├── glue_relational_bones.hpp │ │ ├── glue_relational_meat.hpp │ │ ├── glue_solve_bones.hpp │ │ ├── glue_solve_meat.hpp │ │ ├── glue_times_bones.hpp │ │ ├── glue_times_meat.hpp │ │ ├── glue_toeplitz_bones.hpp │ │ ├── glue_toeplitz_meat.hpp │ │ ├── glue_trapz_bones.hpp │ │ ├── glue_trapz_meat.hpp │ │ ├── gmm_diag_bones.hpp │ │ ├── gmm_diag_meat.hpp │ │ ├── gmm_full_bones.hpp │ │ ├── gmm_full_meat.hpp │ │ ├── gmm_misc_bones.hpp │ │ ├── gmm_misc_meat.hpp │ │ ├── hdf5_misc.hpp │ │ ├── hdf5_name.hpp │ │ ├── include_atlas.hpp │ │ ├── include_hdf5.hpp │ │ ├── include_superlu.hpp │ │ ├── injector_bones.hpp │ │ ├── injector_meat.hpp │ │ ├── memory.hpp │ │ ├── mp_misc.hpp │ │ ├── mtGlueCube_bones.hpp │ │ ├── mtGlueCube_meat.hpp │ │ ├── mtGlue_bones.hpp │ │ ├── mtGlue_meat.hpp │ │ ├── mtOpCube_bones.hpp │ │ ├── mtOpCube_meat.hpp │ │ ├── mtOp_bones.hpp │ │ ├── mtOp_meat.hpp │ │ ├── mtSpGlue_bones.hpp │ │ ├── mtSpGlue_meat.hpp │ │ ├── mtSpOp_bones.hpp │ │ ├── mtSpOp_meat.hpp │ │ ├── mul_gemm.hpp │ │ ├── mul_gemm_mixed.hpp │ │ ├── mul_gemv.hpp │ │ ├── mul_herk.hpp │ │ ├── mul_syrk.hpp │ │ ├── newarp_DenseGenMatProd_bones.hpp │ │ ├── newarp_DenseGenMatProd_meat.hpp │ │ ├── newarp_DoubleShiftQR_bones.hpp │ │ ├── newarp_DoubleShiftQR_meat.hpp │ │ ├── newarp_EigsSelect.hpp │ │ ├── newarp_GenEigsSolver_bones.hpp │ │ ├── newarp_GenEigsSolver_meat.hpp │ │ ├── newarp_SortEigenvalue.hpp │ │ ├── newarp_SparseGenMatProd_bones.hpp │ │ ├── newarp_SparseGenMatProd_meat.hpp │ │ ├── newarp_SymEigsSolver_bones.hpp │ │ ├── newarp_SymEigsSolver_meat.hpp │ │ ├── newarp_TridiagEigen_bones.hpp │ │ ├── newarp_TridiagEigen_meat.hpp │ │ ├── newarp_UpperHessenbergEigen_bones.hpp │ │ ├── newarp_UpperHessenbergEigen_meat.hpp │ │ ├── newarp_UpperHessenbergQR_bones.hpp │ │ ├── newarp_UpperHessenbergQR_meat.hpp │ │ ├── newarp_cx_attrib.hpp │ │ ├── op_all_bones.hpp │ │ ├── op_all_meat.hpp │ │ ├── op_any_bones.hpp │ │ ├── op_any_meat.hpp │ │ ├── op_chi2rnd_bones.hpp │ │ ├── op_chi2rnd_meat.hpp │ │ ├── op_chol_bones.hpp │ │ ├── op_chol_meat.hpp │ │ ├── op_clamp_bones.hpp │ │ ├── op_clamp_meat.hpp │ │ ├── op_cond_bones.hpp │ │ ├── op_cond_meat.hpp │ │ ├── op_cor_bones.hpp │ │ ├── op_cor_meat.hpp │ │ ├── op_cov_bones.hpp │ │ ├── op_cov_meat.hpp │ │ ├── op_cumprod_bones.hpp │ │ ├── op_cumprod_meat.hpp │ │ ├── op_cumsum_bones.hpp │ │ ├── op_cumsum_meat.hpp │ │ ├── op_cx_scalar_bones.hpp │ │ ├── op_cx_scalar_meat.hpp │ │ ├── op_diagmat_bones.hpp │ │ ├── op_diagmat_meat.hpp │ │ ├── op_diagvec_bones.hpp │ │ ├── op_diagvec_meat.hpp │ │ ├── op_diff_bones.hpp │ │ ├── op_diff_meat.hpp │ │ ├── op_dot_bones.hpp │ │ ├── op_dot_meat.hpp │ │ ├── op_dotext_bones.hpp │ │ ├── op_dotext_meat.hpp │ │ ├── op_expmat_bones.hpp │ │ ├── op_expmat_meat.hpp │ │ ├── op_fft_bones.hpp │ │ ├── op_fft_meat.hpp │ │ ├── op_find_bones.hpp │ │ ├── op_find_meat.hpp │ │ ├── op_find_unique_bones.hpp │ │ ├── op_find_unique_meat.hpp │ │ ├── op_flip_bones.hpp │ │ ├── op_flip_meat.hpp │ │ ├── op_hist_bones.hpp │ │ ├── op_hist_meat.hpp │ │ ├── op_htrans_bones.hpp │ │ ├── op_htrans_meat.hpp │ │ ├── op_index_max_bones.hpp │ │ ├── op_index_max_meat.hpp │ │ ├── op_index_min_bones.hpp │ │ ├── op_index_min_meat.hpp │ │ ├── op_inv_bones.hpp │ │ ├── op_inv_meat.hpp │ │ ├── op_logmat_bones.hpp │ │ ├── op_logmat_meat.hpp │ │ ├── op_max_bones.hpp │ │ ├── op_max_meat.hpp │ │ ├── op_mean_bones.hpp │ │ ├── op_mean_meat.hpp │ │ ├── op_median_bones.hpp │ │ ├── op_median_meat.hpp │ │ ├── op_min_bones.hpp │ │ ├── op_min_meat.hpp │ │ ├── op_misc_bones.hpp │ │ ├── op_misc_meat.hpp │ │ ├── op_nonzeros_bones.hpp │ │ ├── op_nonzeros_meat.hpp │ │ ├── op_norm_bones.hpp │ │ ├── op_norm_meat.hpp │ │ ├── op_normalise_bones.hpp │ │ ├── op_normalise_meat.hpp │ │ ├── op_orth_null_bones.hpp │ │ ├── op_orth_null_meat.hpp │ │ ├── op_pinv_bones.hpp │ │ ├── op_pinv_meat.hpp │ │ ├── op_powmat_bones.hpp │ │ ├── op_powmat_meat.hpp │ │ ├── op_princomp_bones.hpp │ │ ├── op_princomp_meat.hpp │ │ ├── op_prod_bones.hpp │ │ ├── op_prod_meat.hpp │ │ ├── op_range_bones.hpp │ │ ├── op_range_meat.hpp │ │ ├── op_relational_bones.hpp │ │ ├── op_relational_meat.hpp │ │ ├── op_repelem_bones.hpp │ │ ├── op_repelem_meat.hpp │ │ ├── op_repmat_bones.hpp │ │ ├── op_repmat_meat.hpp │ │ ├── op_reshape_bones.hpp │ │ ├── op_reshape_meat.hpp │ │ ├── op_resize_bones.hpp │ │ ├── op_resize_meat.hpp │ │ ├── op_reverse_bones.hpp │ │ ├── op_reverse_meat.hpp │ │ ├── op_roots_bones.hpp │ │ ├── op_roots_meat.hpp │ │ ├── op_shift_bones.hpp │ │ ├── op_shift_meat.hpp │ │ ├── op_shuffle_bones.hpp │ │ ├── op_shuffle_meat.hpp │ │ ├── op_sort_bones.hpp │ │ ├── op_sort_index_bones.hpp │ │ ├── op_sort_index_meat.hpp │ │ ├── op_sort_meat.hpp │ │ ├── op_sp_minus_bones.hpp │ │ ├── op_sp_minus_meat.hpp │ │ ├── op_sp_plus_bones.hpp │ │ ├── op_sp_plus_meat.hpp │ │ ├── op_sqrtmat_bones.hpp │ │ ├── op_sqrtmat_meat.hpp │ │ ├── op_stddev_bones.hpp │ │ ├── op_stddev_meat.hpp │ │ ├── op_strans_bones.hpp │ │ ├── op_strans_meat.hpp │ │ ├── op_sum_bones.hpp │ │ ├── op_sum_meat.hpp │ │ ├── op_symmat_bones.hpp │ │ ├── op_symmat_meat.hpp │ │ ├── op_toeplitz_bones.hpp │ │ ├── op_toeplitz_meat.hpp │ │ ├── op_trimat_bones.hpp │ │ ├── op_trimat_meat.hpp │ │ ├── op_unique_bones.hpp │ │ ├── op_unique_meat.hpp │ │ ├── op_var_bones.hpp │ │ ├── op_var_meat.hpp │ │ ├── op_vectorise_bones.hpp │ │ ├── op_vectorise_meat.hpp │ │ ├── op_wishrnd_bones.hpp │ │ ├── op_wishrnd_meat.hpp │ │ ├── operator_cube_div.hpp │ │ ├── operator_cube_minus.hpp │ │ ├── operator_cube_plus.hpp │ │ ├── operator_cube_relational.hpp │ │ ├── operator_cube_schur.hpp │ │ ├── operator_cube_times.hpp │ │ ├── operator_div.hpp │ │ ├── operator_minus.hpp │ │ ├── operator_ostream.hpp │ │ ├── operator_plus.hpp │ │ ├── operator_relational.hpp │ │ ├── operator_schur.hpp │ │ ├── operator_times.hpp │ │ ├── podarray_bones.hpp │ │ ├── podarray_meat.hpp │ │ ├── promote_type.hpp │ │ ├── restrictors.hpp │ │ ├── running_stat_bones.hpp │ │ ├── running_stat_meat.hpp │ │ ├── running_stat_vec_bones.hpp │ │ ├── running_stat_vec_meat.hpp │ │ ├── sp_auxlib_bones.hpp │ │ ├── sp_auxlib_meat.hpp │ │ ├── span.hpp │ │ ├── spdiagview_bones.hpp │ │ ├── spdiagview_meat.hpp │ │ ├── spglue_elem_helper_bones.hpp │ │ ├── spglue_elem_helper_meat.hpp │ │ ├── spglue_join_bones.hpp │ │ ├── spglue_join_meat.hpp │ │ ├── spglue_kron_bones.hpp │ │ ├── spglue_kron_meat.hpp │ │ ├── spglue_max_bones.hpp │ │ ├── spglue_max_meat.hpp │ │ ├── spglue_merge_bones.hpp │ │ ├── spglue_merge_meat.hpp │ │ ├── spglue_min_bones.hpp │ │ ├── spglue_min_meat.hpp │ │ ├── spglue_minus_bones.hpp │ │ ├── spglue_minus_meat.hpp │ │ ├── spglue_plus_bones.hpp │ │ ├── spglue_plus_meat.hpp │ │ ├── spglue_relational_bones.hpp │ │ ├── spglue_relational_meat.hpp │ │ ├── spglue_schur_bones.hpp │ │ ├── spglue_schur_meat.hpp │ │ ├── spglue_times_bones.hpp │ │ ├── spglue_times_meat.hpp │ │ ├── spop_diagmat_bones.hpp │ │ ├── spop_diagmat_meat.hpp │ │ ├── spop_htrans_bones.hpp │ │ ├── spop_htrans_meat.hpp │ │ ├── spop_max_bones.hpp │ │ ├── spop_max_meat.hpp │ │ ├── spop_mean_bones.hpp │ │ ├── spop_mean_meat.hpp │ │ ├── spop_min_bones.hpp │ │ ├── spop_min_meat.hpp │ │ ├── spop_misc_bones.hpp │ │ ├── spop_misc_meat.hpp │ │ ├── spop_normalise_bones.hpp │ │ ├── spop_normalise_meat.hpp │ │ ├── spop_repmat_bones.hpp │ │ ├── spop_repmat_meat.hpp │ │ ├── spop_reverse_bones.hpp │ │ ├── spop_reverse_meat.hpp │ │ ├── spop_strans_bones.hpp │ │ ├── spop_strans_meat.hpp │ │ ├── spop_sum_bones.hpp │ │ ├── spop_sum_meat.hpp │ │ ├── spop_symmat_bones.hpp │ │ ├── spop_symmat_meat.hpp │ │ ├── spop_trimat_bones.hpp │ │ ├── spop_trimat_meat.hpp │ │ ├── spop_var_bones.hpp │ │ ├── spop_var_meat.hpp │ │ ├── spop_vectorise_bones.hpp │ │ ├── spop_vectorise_meat.hpp │ │ ├── strip.hpp │ │ ├── subview_bones.hpp │ │ ├── subview_cube_bones.hpp │ │ ├── subview_cube_each_bones.hpp │ │ ├── subview_cube_each_meat.hpp │ │ ├── subview_cube_meat.hpp │ │ ├── subview_cube_slices_bones.hpp │ │ ├── subview_cube_slices_meat.hpp │ │ ├── subview_each_bones.hpp │ │ ├── subview_each_meat.hpp │ │ ├── subview_elem1_bones.hpp │ │ ├── subview_elem1_meat.hpp │ │ ├── subview_elem2_bones.hpp │ │ ├── subview_elem2_meat.hpp │ │ ├── subview_field_bones.hpp │ │ ├── subview_field_meat.hpp │ │ ├── subview_meat.hpp │ │ ├── sympd_helper.hpp │ │ ├── traits.hpp │ │ ├── translate_arpack.hpp │ │ ├── translate_atlas.hpp │ │ ├── translate_blas.hpp │ │ ├── translate_lapack.hpp │ │ ├── translate_superlu.hpp │ │ ├── trimat_helper.hpp │ │ ├── typedef_elem.hpp │ │ ├── typedef_elem_check.hpp │ │ ├── typedef_mat.hpp │ │ ├── typedef_mat_fixed.hpp │ │ ├── unwrap.hpp │ │ ├── unwrap_cube.hpp │ │ ├── unwrap_spmat.hpp │ │ ├── upgrade_val.hpp │ │ ├── wall_clock_bones.hpp │ │ ├── wall_clock_meat.hpp │ │ ├── xtrans_mat_bones.hpp │ │ ├── xtrans_mat_meat.hpp │ │ ├── xvec_htrans_bones.hpp │ │ └── xvec_htrans_meat.hpp │ ├── dll │ ├── libblas.dll │ ├── libblas.lib │ ├── liblapack.dll │ └── liblapack.lib │ ├── docs │ ├── Makefile │ ├── conf.py │ ├── index.rst │ ├── make.bat │ └── rego.py │ ├── generate_doc.py │ ├── optim-master │ ├── LICENSE │ ├── NOTICE.txt │ ├── README.md │ └── header_only_version │ │ ├── constrained │ │ └── sumt.hpp │ │ ├── line_search │ │ └── more_thuente.hpp │ │ ├── misc │ │ ├── determine_bounds_type.hpp │ │ ├── error_reporting.hpp │ │ ├── error_reporting.ipp │ │ ├── jacobian_adjust.hpp │ │ ├── matrix_ops │ │ │ ├── abs.hpp │ │ │ ├── abs_max.hpp │ │ │ ├── access.hpp │ │ │ ├── accu.hpp │ │ │ ├── array_add.hpp │ │ │ ├── array_div.hpp │ │ │ ├── array_mult.hpp │ │ │ ├── as_scalar.hpp │ │ │ ├── cos.hpp │ │ │ ├── cout.hpp │ │ │ ├── diagmat.hpp │ │ │ ├── diagvec.hpp │ │ │ ├── dot.hpp │ │ │ ├── endl.hpp │ │ │ ├── eval.hpp │ │ │ ├── exp.hpp │ │ │ ├── eye.hpp │ │ │ ├── get_sort_index.hpp │ │ │ ├── hadamard.hpp │ │ │ ├── index_min.hpp │ │ │ ├── inv.hpp │ │ │ ├── is_finite.hpp │ │ │ ├── log.hpp │ │ │ ├── max.hpp │ │ │ ├── min.hpp │ │ │ ├── ncol.hpp │ │ │ ├── norm.hpp │ │ │ ├── ones.hpp │ │ │ ├── pow.hpp │ │ │ ├── randi.hpp │ │ │ ├── randn.hpp │ │ │ ├── randu.hpp │ │ │ ├── reset_negative_values.hpp │ │ │ ├── set_size.hpp │ │ │ ├── size.hpp │ │ │ ├── solve.hpp │ │ │ ├── sqrt.hpp │ │ │ ├── sum.hpp │ │ │ ├── transpose.hpp │ │ │ └── zeros.hpp │ │ ├── misc.hpp │ │ ├── numerical_gradient.hpp │ │ ├── numerical_hessian.hpp │ │ ├── optim_matdefs.hpp │ │ ├── optim_options.hpp │ │ ├── optim_structs.hpp │ │ ├── optim_trace.hpp │ │ ├── transform_vals.hpp │ │ ├── unit_vec.hpp │ │ └── unit_vec.ipp │ │ ├── optim.hpp │ │ ├── unconstrained │ │ ├── bfgs.hpp │ │ ├── cg.hpp │ │ ├── de.hpp │ │ ├── de_prmm.hpp │ │ ├── gd.hpp │ │ ├── gd.ipp │ │ ├── lbfgs.hpp │ │ ├── newton.hpp │ │ ├── nm.hpp │ │ ├── pso.hpp │ │ └── pso_dv.hpp │ │ └── zeros │ │ ├── broyden.hpp │ │ └── broyden_df.hpp │ └── rego.pyx └── test ├── test.R ├── 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