├── BehaviorDEPOT_GUI_v1_6.mlapp ├── BehaviorDEPOTv1.6.mlappinstall ├── BehaviorDEPOTv1.6.prj ├── LICENSE ├── P_calculateBehaviorTEMPLATE.m ├── README.md ├── calculateBehaviorTEMPLATE.m ├── code ├── BehDEPOT_mainscript.m ├── BehaviorDEPOTApp.m ├── classifiers │ ├── P_calculate3Chamber.m │ ├── P_calculateBehaviorTEMPLATE.m │ ├── P_calculateEPM.m │ ├── P_calculateEscape.m │ ├── P_calculateExploration.m │ ├── P_calculateFreezing_jitter.m │ ├── P_calculateFreezing_velocity.m │ ├── P_calculateJumping.m │ ├── P_calculateMoving.m │ ├── P_calculateOFT.m │ ├── P_calculatePMA.m │ ├── P_calculateRearing.m │ ├── P_calculateTMaze.m │ ├── calculate3Chamber.m │ ├── calculateBehaviorTEMPLATE.m │ ├── calculateEPM.m │ ├── calculateEscape.m │ ├── calculateExploration.m │ ├── calculateFreezing_jitter.m │ ├── calculateFreezing_velocity.m │ ├── calculateJumping.m │ ├── calculateMoving.m │ ├── calculateOFT.m │ ├── calculatePMA.m │ ├── calculateRearing.m │ └── calculateTMaze.m ├── convertHumanAnnotations.m ├── convertHumanAnnotations_BD.m ├── functions │ ├── addSlash.m │ ├── applyMaxThreshold.m │ ├── applyMinThreshold.m │ ├── applyTemporalFilter.m │ ├── calculateEvents.m │ ├── calculateMetrics.m │ ├── calculatePerformance.m │ ├── calculateROI.m │ ├── calculateUserEvents.m │ ├── calculateUserROI.m │ ├── cleanText.m │ ├── convolveFrames.m │ ├── dir2.m │ ├── dirDirs.m │ ├── drawClassROIs.m │ ├── drawROIs.m │ ├── filterIntersect.m │ ├── findStartStop.m │ ├── genAllMetrics.m │ ├── genBehStruct.m │ ├── genTracking_custom.m │ ├── getFiles_batch.m │ ├── getFiles_single.m │ ├── importDLCTracking.m │ ├── importSLEAPTracking.m │ ├── importTracking.m │ ├── isSLEAPh5.m │ ├── launch_IR_module.m │ ├── makeParamsStruct.m │ ├── makeVector.m │ ├── polygeom.m │ ├── prepBatch.m │ ├── saveAnalysis.m │ ├── saveBehAnalysis.m │ ├── saveDataPrep.m │ ├── searchROI.m │ ├── sleap2dlc.m │ ├── smoothTracking_custom.m │ └── videoInterface.m ├── gui_settings.mat ├── modules │ ├── BD_dataPrep.m │ ├── DE_broad.m │ ├── DE_focused.m │ ├── classifier_optimization_module.m │ ├── data_exploration_module.m │ ├── interrater_module.m │ ├── launch_IR_module.m │ └── validation_module.m └── plotting │ ├── IR_disagreement.m │ ├── IR_percent_agreement.m │ ├── IR_percent_overlap.m │ ├── IR_performance.m │ ├── plotBouts.m │ ├── plotPointTracking.m │ ├── plotPrefs_launchIR.m │ ├── plotTrajectoryMap.m │ ├── plotValidationAvg.m │ ├── plotValidationPerformance.m │ ├── plotValidationSingle.m │ └── plot_bouts.m ├── demo ├── README_demo ├── demo1 │ ├── demo1_manual_annotations.mat │ ├── demo1_tracking.csv │ ├── demo1_video.avi_analyzed │ │ ├── Behavior Bouts.fig │ │ ├── Behavior.mat │ │ ├── Freezing Map.fig │ │ ├── Metrics.mat │ │ ├── Moving Map.fig │ │ ├── Params.mat │ │ └── Tracking.mat │ └── hB_demo1_manual_annotations.mat.mat ├── demo2 │ ├── demo2.avi_analyzed │ │ ├── Behavior Bouts.fig │ │ ├── Behavior.mat │ │ ├── Freezing Map.fig │ │ ├── Metrics.mat │ │ ├── Moving Map.fig │ │ ├── Params.mat │ │ ├── Temporal Map.fig │ │ └── Tracking.mat │ ├── demo2_cue_frames.csv │ ├── demo2_manual_annotations.mat │ ├── demo2_tracking.csv │ └── hB_demo2_manual_annotations.mat ├── demo3 │ ├── demo3_analyzed │ │ ├── Behavior.mat │ │ ├── Metrics.mat │ │ ├── Params.mat │ │ └── Tracking.mat │ └── demo3_tracking.csv ├── demo4 │ └── demo4_video.csv ├── demo5 │ ├── demo5_analyzed │ │ ├── Behavior Bouts.fig │ │ ├── Behavior.mat │ │ ├── Behavior_Filter.mat │ │ ├── Metrics.mat │ │ ├── Moving Map.fig │ │ ├── Params.mat │ │ ├── Tracking.mat │ │ ├── Trials.mat │ │ ├── choiceVector.mat │ │ ├── headScans_NoVTE.mat │ │ ├── headScans_VTE.mat │ │ └── vte_trials.mat │ └── demo5_tracking.csv ├── demo6 │ └── demo6_tracking.csv └── demo7 │ ├── Error tables │ ├── Freezing_Ref_Average_Comp_Expert1.txt │ ├── Freezing_Ref_Average_Comp_Expert2.txt │ ├── Freezing_Ref_Average_Comp_Expert3.txt │ └── Freezing_Ref_Average_Comp_Novice.txt │ ├── IR_Disagreement.png │ ├── IR_PercentAgreement.png │ ├── IR_PercentOverlap.png │ ├── IR_Performance.png │ ├── IR_Results.mat │ ├── hB_expert1.mat │ ├── hB_expert2.mat │ ├── hB_expert3.mat │ └── hB_novice.mat ├── old FCXD └── init ├── old versions ├── BehDep_GUI_v051.mlapp ├── BehaviorDEPOT.prj ├── BehaviorDEPOTApp.m ├── BehaviorDEPOT_1_1.mlappinstall ├── BehaviorDEPOT_GUI_v1_0.mlapp ├── BehaviorDEPOT_GUI_v1_1.mlapp ├── BehaviorDEPOT_GUI_v1_3.mlapp ├── BehaviorDEPOT_GUI_v1_4a.mlapp ├── BehaviorDEPOT_GUI_v1_4b.mlapp ├── BehaviorDEPOT_GUI_v1_4c.mlapp ├── BehaviorDEPOT_GUI_v1_4d.mlapp ├── BehaviorDEPOT_GUI_v1_5.mlapp ├── BehaviorDEPOT_GUI_v1_51.mlapp ├── BehaviorDEPOT_v0_50.mlappinstall ├── BehaviorDEPOT_v0_51.mlappinstall ├── BehaviorDEPOT_v0_9.mlappinstall ├── BehaviorDEPOT_v1_0.mlappinstall ├── BehaviorDEPOT_v1_0_0.mlappinstall ├── BehaviorDEPOT_v1_0_0b.mlappinstall ├── BehaviorDEPOT_v1_0b.mlappinstall ├── BehaviorDEPOT_v1_1d.mlappinstall ├── BehaviorDEPOTv051.mlappinstall ├── BehaviorDEPOTv1.2.mlappinstall ├── BehaviorDEPOTv1.2d.mlappinstall ├── BehaviorDEPOTv1.3.mlappinstall ├── BehaviorDEPOTv1.3a.mlappinstall ├── BehaviorDEPOTv1.3a.prj ├── BehaviorDEPOTv1.3b.mlappinstall ├── BehaviorDEPOTv1.3b.prj ├── BehaviorDEPOTv1.3c.mlappinstall ├── BehaviorDEPOTv1.3c.prj ├── BehaviorDEPOTv1.3d.mlappinstall ├── BehaviorDEPOTv1.3d.prj ├── BehaviorDEPOTv1.4a.mlappinstall ├── BehaviorDEPOTv1.4a.prj ├── BehaviorDEPOTv1.4b.mlappinstall ├── BehaviorDEPOTv1.4b.prj ├── BehaviorDEPOTv1.4c.mlappinstall ├── BehaviorDEPOTv1.4c.prj ├── BehaviorDEPOTv1.4d.mlappinstall ├── BehaviorDEPOTv1.4d.prj ├── BehaviorDEPOTv1.5.mlappinstall ├── BehaviorDEPOTv1.51.mlappinstall ├── BehaviorDEPOTv1.51.prj └── Fear Conditioning Experiment Designer_v1-2-2.mlappinstall └── other scripts ├── P_calculateBehaviorTEMPLATE.m ├── VTE_analysisScript.m └── calculateBehaviorTEMPLATE.m /BehaviorDEPOT_GUI_v1_6.mlapp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DeNardoLab/BehaviorDEPOT/HEAD/BehaviorDEPOT_GUI_v1_6.mlapp 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