├── .gitignore ├── LICENSE ├── README.md ├── call_script.sh ├── config.sh ├── make_graphtyper_pipeline.sh ├── make_graphtyper_sv_pipeline.sh ├── node_script.sh ├── pipelines.make ├── sv_node_script.sh ├── test ├── SAMP1.bam ├── SAMP1.bam.bai ├── SAMP2.bam ├── SAMP2.bam.bai ├── SAMP3.bam ├── SAMP3.bam.bai ├── SAMP4.bam ├── SAMP4.bam.bai ├── bamlist ├── expected.vcf.gz ├── expected.vcf.gz.tbi ├── reference.fa └── reference.fa.fai ├── test_config.sh └── test_sv ├── README.md ├── SAMP1.bam ├── SAMP1.bam.bai ├── SAMP2.bam ├── SAMP2.bam.bai ├── SAMP3.bam ├── SAMP3.bam.bai ├── SAMP4.bam ├── SAMP4.bam.bai ├── clean.sh ├── expected_b9c603e.vcf ├── reference.fa ├── reference.fa.fai ├── svs.vcf.gz └── svs.vcf.gz.tbi /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DecodeGenetics/graphtyper-pipelines/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: 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