├── Dockerfile ├── Dockerfile_Cpu ├── FatSegNet_Variables.pdf ├── Images ├── DZNE.png ├── QC_3.png └── RZ_UK_Logo_Rheinland Studie_sw.png ├── LICENSE ├── README.md ├── __init__.py ├── example_data_folder ├── README.md ├── participants.csv ├── subject_1 │ ├── FatImaging_F.nii.gz │ └── FatImaging_W.nii.gz ├── subject_2 │ ├── FatImaging_F.nii.gz │ └── FatImaging_W.nii.gz └── subject_3 │ ├── FatImaging_F.nii.gz │ └── FatImaging_W.nii.gz └── tool ├── Adipose_Seg_Models ├── Localization │ ├── Loc_CDFNet_Baseline_coronal │ │ ├── logs │ │ │ └── CDFNet_Baseline_coronal_best_weights.h5 │ │ └── train_parameters.npy │ └── Loc_CDFNet_Baseline_sagittal │ │ ├── logs │ │ └── CDFNet_Baseline_sagittal_best_weights.h5 │ │ └── train_parameters.npy └── Segmentation │ ├── .DS_Store │ ├── Baseline_Mixed_Multi_Plane │ ├── logs │ │ └── Baseline_Mixed_Multi_Plane_best_weights.h5 │ └── train_parameters.npy │ ├── CDFNet_Baseline_axial │ ├── logs │ │ └── CDFNet_Baseline_axial_best_weights.h5 │ └── train_parameters.npy │ ├── CDFNet_Baseline_coronal │ ├── logs │ │ └── CDFNet_Baseline_frontal_best_weights.h5 │ └── train_parameters.npy │ └── CDFNet_Baseline_sagittal │ ├── logs │ └── CDFNet_Baseline_sagital_best_weights.h5 │ └── train_parameters.npy ├── Code ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-35.pyc │ └── adipose_pipeline.cpython-35.pyc ├── adipose_pipeline.py └── utilities │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-35.pyc │ ├── conform.cpython-35.pyc │ ├── image_processing.cpython-35.pyc │ ├── loss.cpython-35.pyc │ ├── metrics.cpython-35.pyc │ ├── misc.cpython-35.pyc │ ├── models.cpython-35.pyc │ └── visualization_misc.cpython-35.pyc │ ├── conform.py │ ├── image_processing.py │ ├── loss.py │ ├── metrics.py │ ├── misc.py │ ├── models.py │ └── visualization_misc.py ├── Data └── Readme ├── Output └── ReadMe ├── bash_profile └── run_FatSegNet.py /Dockerfile: -------------------------------------------------------------------------------- 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