├── .gitignore ├── LICENSE ├── README.md ├── colab └── readme.md ├── data ├── fig1 │ ├── fish.h5 │ ├── fish.jpg │ ├── marmo.h5 │ ├── marmo.jpg │ ├── mouse.h5 │ ├── mouse.jpg │ ├── pups.h5 │ └── pups.jpg ├── fig2 │ ├── assembly_fish.pickle │ ├── assembly_marmosets.pickle │ ├── assembly_pups.pickle │ ├── assembly_trimice.pickle │ ├── coords.npy │ ├── dist_fish.csv │ ├── dist_marmosets.csv │ ├── dist_pups.csv │ ├── dist_trimice.csv │ ├── ids.pickle │ ├── length_fish.pickle │ ├── length_marmosets.pickle │ ├── length_pups.pickle │ ├── length_trimice.pickle │ ├── map_dlc.pickle │ ├── map_mmpose.pickle │ ├── marmo_img.png │ ├── meta_fish.pickle │ ├── meta_marmosets.pickle │ ├── meta_pups.pickle │ └── meta_trimice.pickle ├── fig3 │ ├── fish_0.h5 │ ├── fish_0.jpg │ ├── fish_1.h5 │ ├── fish_1.jpg │ ├── fish_track.h5 │ ├── marmo_0.h5 │ ├── marmo_0.jpg │ ├── marmo_1.h5 │ ├── marmo_1.jpg │ ├── marmo_track.h5 │ ├── mota.h5 │ ├── mouse_0.h5 │ ├── mouse_0.jpg │ ├── mouse_1.h5 │ ├── mouse_1.jpg │ ├── mouse_track.h5 │ ├── pups_0.h5 │ ├── pups_0.jpg │ └── pups_track.h5 ├── figS3 │ ├── marmo_id.h5 │ ├── perf_fish.h5 │ ├── perf_marmosets.h5 │ ├── perf_pups.h5 │ └── perf_trimice.h5 ├── figS4 │ ├── edges.pickle │ └── edges_meta.pickle ├── figS5 │ ├── speednocalib.log │ └── speedwcalib.log ├── figS6 │ ├── diff_cages.h5 │ ├── dist_similar.csv │ └── meta_similar.pickle ├── figS7b │ └── mAP_data.pickle └── figS9 │ ├── ids.pickle │ ├── marmoS9.h5 │ ├── miceS9.h5 │ └── subgraph.txt └── notebooks ├── fig1.ipynb ├── fig2.ipynb ├── fig3.ipynb ├── fig4.ipynb ├── figS2.ipynb ├── figS3.ipynb ├── figS4.ipynb ├── figS5.ipynb ├── figS6.ipynb ├── figS7b.ipynb ├── figS8.ipynb ├── figS9.ipynb └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DeepLabCut/maDLC_NatureMethods2022/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: 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