├── .azure-pipelines ├── azure-pipelines.yml ├── ci-unix.yml ├── ci-windows.yml ├── flake8-validation.py └── syntax-validation.py ├── .bumpversion.cfg ├── .gitignore ├── .pre-commit-config.yaml ├── LICENSE ├── MANIFEST.in ├── README.md ├── RELEASE.md ├── pyproject.toml ├── setup.cfg ├── setup.py └── src └── icebreaker ├── KMeans_segmenter.py ├── __init__.py ├── average_mask.py ├── cli ├── __init__.py ├── ib_5fig.py ├── ib_group.py ├── ib_job.py ├── micrographs_enhance.py ├── micrographs_group.py ├── particles_group.py └── stats.py ├── correct_path.py ├── filter_designer.py ├── filter_designer_not_normalized.py ├── five_figures.py ├── ib_group_template.star ├── ib_job_template_FLATTEN_MODE.star ├── ib_job_template_GROUP_MODE.star ├── ice_groups.py ├── icebreaker_equalize_multi.py ├── icebreaker_icegroups_multi.py ├── listdir.py ├── local_mask.py ├── original_mask.py ├── original_mask_fast.py ├── plot_boxplots.py ├── show_gradient.py ├── star_appender.py └── window_mean.py 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