├── .github ├── CODE_OF_CONDUCT.md ├── SECURITY.md └── workflows │ ├── run_dataset_generation.yaml │ └── run_unit_tests.yaml ├── .gitignore ├── .gitmodules ├── Dockerfile ├── LICENSE.txt ├── README.md ├── img ├── pyspi_logo.png └── pyspi_logo_darkmode.png ├── pyproject.toml ├── pyspi ├── __init__.py ├── base.py ├── calculator.py ├── config.yaml ├── data.py ├── data │ ├── cml.npy │ ├── cml7.npy │ ├── forex.npy │ └── standard_normal.npy ├── fabfour_config.yaml ├── fast_config.yaml ├── lib │ ├── __init__.py │ ├── ids │ │ ├── LICENSE.txt │ │ ├── __init__.py │ │ ├── dependence.py │ │ └── numpy_dependence.py │ ├── jidt │ │ ├── __init__.py │ │ ├── build.xml │ │ ├── infodynamics.jar │ │ ├── license-gplv3.txt │ │ ├── readme.txt │ │ └── version-1.6.1.txt │ └── phi_native.py ├── phiconf.yaml ├── sonnet_config.yaml ├── statistics │ ├── __init__.py │ ├── basic.py │ ├── causal.py │ ├── distance.py │ ├── infotheory.py │ ├── misc.py │ ├── spectral.py │ └── wavelet.py └── utils.py ├── requirements.txt ├── setup.py └── tests ├── CML7_benchmark_tables.pkl ├── conftest.py ├── generate_benchmark_tables.py ├── phi_demo.ipynb ├── test_SPIs.py ├── test_calc.py ├── test_phi_native.py └── test_utils.py /.github/CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DynamicsAndNeuralSystems/pyspi/HEAD/.github/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /.github/SECURITY.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/DynamicsAndNeuralSystems/pyspi/HEAD/.github/SECURITY.md -------------------------------------------------------------------------------- /.github/workflows/run_dataset_generation.yaml: -------------------------------------------------------------------------------- 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