├── .gitignore ├── Dockerfile ├── LICENSE ├── README.md ├── WebulousGoogleApp ├── About.html ├── BioPortalSearch.gs ├── Code.gs ├── DataSubmission.gs ├── OntologySearch.html ├── SelectTemplate.html ├── SidebarFunctionality.gs ├── SourceData.gs ├── SubmitData.html ├── Utils.gs └── Validations.html ├── ontology-api ├── pom.xml └── src │ ├── main │ └── java │ │ └── uk │ │ └── ac │ │ └── ebi │ │ └── fgpt │ │ ├── OntologyDAO.java │ │ └── OntologyDAOImpl.java │ └── test │ ├── java │ └── OntologyDAOTest.java │ └── resources │ └── pizza.owl ├── pom.xml ├── populous-api ├── pom.xml └── src │ └── main │ └── java │ └── uk │ └── ac │ └── ebi │ └── spot │ └── webulous │ ├── exception │ ├── AutoIDException.java │ └── OWLEntityCreationException.java │ ├── impl │ └── SimplePopulousTemplate.java │ ├── model │ ├── AutoIDGenerator.java │ ├── EntityCreation.java │ ├── LabelDescriptor.java │ ├── NewEntities.java │ ├── OWLEntityCreationSet.java │ ├── OWLEntityFactory.java │ ├── PopulousDataRestriction.java │ ├── PopulousModel.java │ ├── PopulousPattern.java │ ├── PopulousTemplate.java │ ├── RestrictionType.java │ └── Revertable.java │ └── service │ ├── PopulousService.java │ └── TemplateService.java ├── populous-cli ├── oppl-runner-app │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── uk │ │ │ └── ac │ │ │ └── ebi │ │ │ └── spot │ │ │ └── webulous │ │ │ └── PatternExecutionApp.java │ │ └── resources │ │ ├── application.properties │ │ └── logback.xml ├── pom.xml └── restriction-loader-app │ ├── pom.xml │ └── src │ └── main │ ├── java │ └── uk │ │ └── ac │ │ └── ebi │ │ └── spot │ │ └── webulous │ │ └── RestrictionUpdateApp.java │ └── resources │ ├── application.properties │ └── logback.xml ├── populous-oppl ├── pom.xml └── src │ ├── main │ └── java │ │ └── uk │ │ └── ac │ │ └── ebi │ │ └── spot │ │ └── webulous │ │ ├── entity │ │ ├── AbstractIDGenerator.java │ │ ├── CustomLabelDescriptor.java │ │ ├── CustomOWLEntityFactory.java │ │ ├── IterativeAutoIDGenerator.java │ │ ├── PseudoRandomAutoIDGenerator.java │ │ ├── SimpleEntityCreation.java │ │ ├── SimpleNewEntities.java │ │ ├── SimpleOWLEntityCreationSet.java │ │ ├── UrigenEntityFactory.java │ │ └── urigen │ │ │ ├── PreferenceBean.java │ │ │ ├── UrigenEntityBean.java │ │ │ ├── UrigenRequestBean.java │ │ │ └── UserBean.java │ │ ├── model │ │ └── PropertyBasedPopulousModel.java │ │ └── service │ │ └── OpplPatternExecutionService.java │ └── test │ ├── java │ └── uk │ │ └── ac │ │ └── ebi │ │ └── spot │ │ └── webulous │ │ └── service │ │ ├── TestOpplPatternExecutionService.java │ │ └── TestPopulousPatternExecutor.java │ └── resources │ ├── log4j.xml │ └── pizza.owl ├── webulous-dependencies └── pom.xml ├── webulous-mvc ├── pom.xml └── src │ └── main │ ├── default-resources │ ├── static │ │ ├── css │ │ │ ├── main.css │ │ │ └── spacelab.bootstrap.min.css │ │ └── js │ │ │ └── main.js │ └── templates │ │ ├── index.html │ │ ├── restriction_runs.html │ │ ├── restriction_values.html │ │ ├── submissions.html │ │ ├── template.html │ │ └── templates.html │ ├── docs │ └── docs-content.adoc │ ├── java │ └── uk │ │ └── ac │ │ └── ebi │ │ └── spot │ │ └── webulous │ │ ├── LoaderApp.java │ │ ├── ServerApplication.java │ │ ├── config │ │ ├── MvcConfig.java │ │ └── WebulousRestMVCConfirguation.java │ │ └── controller │ │ ├── DataController.java │ │ ├── HomeController.java │ │ ├── RestrictionController.java │ │ └── TemplateController.java │ └── resources │ ├── application-dev.properties │ ├── application.properties │ ├── logback.xml │ ├── pizza.owl │ ├── static │ ├── css │ │ ├── bootstrap-tour-standalone.min.css │ │ ├── main.css │ │ └── spacelab.bootstrap.min.css │ ├── img │ │ ├── auto_complete.png │ │ ├── side_bar_1.png │ │ ├── webulous.png │ │ └── webulous_logo.png │ └── js │ │ ├── bootstrap-tour-standalone.min.js │ │ ├── main.js │ │ └── webulous-docs.js │ └── templates │ ├── contact.html │ ├── docs-template.html │ ├── index.html │ ├── restriction_runs.html │ ├── restriction_values.html │ ├── 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