├── .dockerignore ├── .gitignore ├── .travis.yml ├── CMakeLists.txt ├── Dockerfile ├── LICENSE.txt ├── MATLAB ├── getmesherparam.m ├── loadmesh.m ├── readme.md ├── runmesher.m ├── saveinr_EIT.m ├── stl2inr.m ├── stlTools │ ├── femur_binary.stl │ ├── license.txt │ ├── readme.txt │ ├── sphere_ascii.stl │ ├── stlAddVerts.m │ ├── stlDelVerts.m │ ├── stlDemo.m │ ├── stlGetFormat.m │ ├── stlGetVerts.m │ ├── stlPlot.m │ ├── stlRead.m │ ├── stlReadAscii.m │ ├── stlReadBinary.m │ ├── stlSlimVerts.m │ └── stlWrite.m └── writemesherparam.m ├── README.md ├── bin └── .gitignore ├── cmake └── FindMATLAB.cmake ├── examples ├── brain │ ├── Brain.inr │ ├── Brain_elec.txt │ ├── Brain_params.txt │ ├── Brain_params_HR.txt │ ├── Brain_seg.mat │ ├── example_brain.m │ ├── figures │ │ ├── BrainMesh_LowRes.png │ │ ├── Seg3D.png │ │ ├── brain_PV.png │ │ ├── brain_PV_HR.png │ │ ├── brain_seg.png │ │ └── brain_seg_slice.png │ ├── output │ │ └── readme.md │ └── readme.md ├── deformation │ ├── deformation_params.txt │ ├── figures │ │ ├── deformed_cubes.gif │ │ ├── deformed_head.gif │ │ └── surface_edge_point_stretch.png │ └── readme.md ├── neonatescalp │ ├── .gitignore │ ├── NNelecposorig.txt │ ├── NNscalp.inr │ ├── NNscalp.stl │ ├── NNscalp_elecINRpos.txt │ ├── NNscalp_param.txt │ ├── NNscalp_param_HR.txt │ ├── NNskull_lowpoly.STL │ ├── example_neonate.m │ ├── figures │ │ ├── NN_HR_PV.png │ │ ├── NN_HR_PV_Slice.png │ │ ├── NN_LowRes.png │ │ ├── NN_PV.png │ │ ├── NN_bin.png │ │ ├── NN_slice.png │ │ └── NN_stl.png │ ├── output_HR │ │ └── readme.md │ └── readme.md ├── readme.md ├── refinements │ ├── Elecs.txt │ ├── Input.inr │ ├── Params_0.txt │ ├── Params_1.txt │ ├── Params_2.txt │ ├── Params_3.txt │ ├── Params_4.txt │ ├── Params_5.txt │ ├── figures │ │ ├── 0_PV.png │ │ ├── 1_Slice.png │ │ ├── 2_SF1.png │ │ ├── 2_SF1_Slice.png │ │ ├── 2_SF2.png │ │ ├── 2_SF2_Slice.png │ │ ├── 3_Slice.png │ │ ├── 4_Slice.png │ │ ├── 5_SF1.png │ │ ├── 5_SF1_Slice.png │ │ ├── 5_SF2.png │ │ ├── 5_SF2_Slice.png │ │ └── Sizing_fields.m │ ├── output │ │ └── readme.md │ └── readme.md ├── run_examples.sh ├── runexamples.m ├── solvers │ ├── EIDORS │ │ ├── NN2016_Prt_full.txt │ │ ├── NNEIDORS_ex.mat │ │ ├── NNEIDORS_param.txt │ │ ├── eidors_example.m │ │ ├── figures │ │ │ ├── EIDORS_FEM.png │ │ │ └── EIDORS_Volts.png │ │ ├── output │ │ │ └── readme.md │ │ └── readme.md │ ├── PEITS │ │ ├── NN2016_Prt_full.txt │ │ ├── NNPEITS_param.txt │ │ ├── PEITS_example.m │ │ ├── figures │ │ │ ├── NN_PEITS_Mesh.png │ │ │ ├── PEITS_Bash.png │ │ │ └── PEITS_Volts.png │ │ ├── output │ │ │ └── readme.md │ │ ├── parameter │ │ ├── readme.md │ │ └── standardparamsNN │ ├── SuperSolver │ │ ├── NN2016_Prt_full.txt │ │ ├── NNSS_param.txt │ │ ├── figures │ │ │ └── SuperSolver_Volts.png │ │ ├── output │ │ │ └── readme.md │ │ ├── readme.md │ │ └── supersolver_example.m │ ├── readme.md │ └── toast │ │ ├── Params_Toast.txt │ │ ├── ToastElecs.txt │ │ ├── figures │ │ ├── Toast_PDMF.png │ │ └── Toast_Phi.png │ │ ├── mesher2toast.m │ │ ├── output │ │ └── readme.md │ │ └── readme.md └── unitcube │ ├── Params_0.txt │ ├── Params_1.txt │ ├── electrodes.txt │ ├── examplescube.m │ ├── figures │ ├── CubeInit.png │ ├── CubeMatlab.png │ └── CubeOpt.png │ ├── output │ └── readme.md │ ├── readme.md │ └── unit_cube.inr ├── inputs ├── Electrodes.txt ├── input.inr └── params.txt ├── src ├── CGAL_include.h ├── CMakeLists.txt ├── Sizing_fields.cpp ├── Sizing_fields.h ├── deform_volume.cpp ├── deform_volume.h ├── include.h ├── input_parameters.cpp ├── input_parameters.h ├── mesh_operations.cpp ├── mesh_operations.h ├── mesh_stretcher.cpp ├── mesh_stretcher.h ├── mesher.cpp ├── save_dgf.cpp ├── save_dgf.h └── write_c3t3_to_vtk_xml_file.h └── test ├── CMakeLists.txt ├── catch.hpp ├── electrodes.txt ├── input_idx.txt ├── list_of_deformations.txt ├── run_tests.cpp ├── test_mesh_operations.cpp ├── test_sizing_field.cpp ├── test_stretching.cpp ├── test_warping.cpp ├── unit_cube.inr └── unit_cube_2_domains.inr 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-------------------------------------------------------------------------------- 1 | #define CATCH_CONFIG_MAIN 2 | #include "catch.hpp" 3 | -------------------------------------------------------------------------------- /test/test_mesh_operations.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EIT-team/Mesher/HEAD/test/test_mesh_operations.cpp -------------------------------------------------------------------------------- /test/test_sizing_field.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EIT-team/Mesher/HEAD/test/test_sizing_field.cpp -------------------------------------------------------------------------------- /test/test_stretching.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EIT-team/Mesher/HEAD/test/test_stretching.cpp 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