└── cime_config
    ├── tables
        ├── data_table_hafs
        ├── data_table_mrweather
        ├── data_table_s2s
        ├── field_table_s2s
        ├── field_table_hafs
        ├── field_table_mrweather
        ├── diag_table_s2s
        ├── diag_table_mrweather
        └── diag_table_hafs
    ├── cpl
        └── atm_comp_nuopc.F90
    ├── config_archive.xml
    ├── user_nl_ufsatm
    ├── config_component.xml
    ├── config_compsets.xml
    ├── configure_cime.cmake
    ├── config_pes.xml
    ├── testlist.xml
    ├── buildlib
    └── buildnml


/cime_config/tables/data_table_hafs:
--------------------------------------------------------------------------------
1 | 


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/cime_config/tables/data_table_mrweather:
--------------------------------------------------------------------------------
1 | 


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/cime_config/tables/data_table_s2s:
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1 | "OCN", "runoff", "runoff", "./INPUT/runoff.daitren.clim.1440x1080.v20180328.nc", "none" ,  1.0
2 | 


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/cime_config/cpl/atm_comp_nuopc.F90:
--------------------------------------------------------------------------------
1 |  module atm_comp_nuopc
2 |    use fv3gfs_cap_mod, only : SetServices
3 |    public :: SetServices
4 |  end module atm_comp_nuopc
5 | 


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/cime_config/tables/field_table_s2s:
--------------------------------------------------------------------------------
 1 | # added by FRE: sphum must be present in atmos
 2 | # specific humidity for moist runs
 3 |  "TRACER", "atmos_mod", "sphum"
 4 |            "longname",     "specific humidity"
 5 |            "units",        "kg/kg"
 6 |        "profile_type", "fixed", "surface_value=3.e-6" /
 7 | # prognostic cloud water mixing ratio
 8 |  "TRACER", "atmos_mod", "liq_wat"
 9 |            "longname",     "cloud water mixing ratio"
10 |            "units",        "kg/kg"
11 |        "profile_type", "fixed", "surface_value=1.e30" /
12 | # prognostic ozone mixing ratio tracer
13 |  "TRACER", "atmos_mod", "o3mr"
14 |            "longname",     "ozone mixing ratio"
15 |            "units",        "kg/kg"
16 |        "profile_type", "fixed", "surface_value=1.e30" /
17 | 


--------------------------------------------------------------------------------
/cime_config/config_archive.xml:
--------------------------------------------------------------------------------
 1 | <components version="2.0">
 2 | 
 3 |   <comp_archive_spec compname="ufsatm" compclass="atm">
 4 |     <hist_file_extension>atm.f\d+.nc$</hist_file_extension>
 5 |     <hist_file_extension>sfc.f\d+.nc$</hist_file_extension>
 6 | 
 7 |     <rest_history_varname>nhfil</rest_history_varname>
 8 |     <test_file_names>
 9 |       <tfile disposition="move">casename.ufsatm.atm.f024.nc</tfile>
10 |       <tfile disposition="move">casename.ufsatm.sfc.f000.nc</tfile>
11 |       <tfile disposition="move">casename.ufsatm.atm.f999.nc</tfile>
12 |       <tfile disposition="ignore">othercase.ufsatm.sfc.f024.nc</tfile>
13 |       <tfile disposition="ignore">casename.ufsatm.sfc.f024.nc.base</tfile>
14 |     </test_file_names>
15 |   </comp_archive_spec>
16 | </components>
17 | 


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/cime_config/user_nl_ufsatm:
--------------------------------------------------------------------------------
 1 | !----------------------------------------------------------------------------------
 2 | ! This file can be used to change namelist options for:
 3 | ! - Chgres
 4 | ! - UFS MR-Weather Model
 5 | ! - NCEP Post
 6 | !
 7 | ! Users should add all user-specific namelist changes below in the form of
 8 | !  namelist_var = new_namelist_value
 9 | !
10 | ! To change the namelist variables that are defined as multiple times under 
11 | ! different namelist groups
12 | !  namelist_var@namelist_group = new_namelist_value
13 | !
14 | ! Following is the list of namelist variables that need to be accessed by
15 | ! specifying the namelist groups:
16 | !
17 | ! alpha@nam_physics_nml
18 | ! alpha@test_case_nml
19 | ! avg_max_length@atmos_model_nml
20 | ! avg_max_length@gfs_physics_nml
21 | ! debug@atmos_model_nml
22 | ! debug@gfs_physics_nml
23 | ! icliq_sw@gfs_physics_nml
24 | ! icliq_sw@nam_physics_nml
25 | ! iospec_ieee32@fms_nml
26 | ! iospec_ieee32@fms_io_nml
27 | ! ntiles@fv_core_nml
28 | ! ntiles@nest_nml
29 | ! read_all_pe@fms_io_nml
30 | ! read_all_pe@fms_nml
31 | ! regional@chgres
32 | ! regional@fv_core_nml
33 | !----------------------------------------------------------------------------------
34 | 
35 | 


--------------------------------------------------------------------------------
/cime_config/tables/field_table_hafs:
--------------------------------------------------------------------------------
 1 | # added by FRE: sphum must be present in atmos
 2 | # specific humidity for moist runs
 3 |  "TRACER", "atmos_mod", "sphum"
 4 |            "longname",     "specific humidity"
 5 |            "units",        "kg/kg"
 6 |        "profile_type", "fixed", "surface_value=1.e30" /
 7 | # prognostic cloud water mixing ratio
 8 |  "TRACER", "atmos_mod", "liq_wat"
 9 |            "longname",     "cloud water mixing ratio"
10 |            "units",        "kg/kg"
11 |        "profile_type", "fixed", "surface_value=1.e30" /
12 |  "TRACER", "atmos_mod", "rainwat"
13 |            "longname",     "rain mixing ratio"
14 |            "units",        "kg/kg"
15 |        "profile_type", "fixed", "surface_value=1.e30" /
16 |  "TRACER", "atmos_mod", "ice_wat"
17 |            "longname",     "cloud ice mixing ratio"
18 |            "units",        "kg/kg"
19 |        "profile_type", "fixed", "surface_value=1.e30" /
20 |  "TRACER", "atmos_mod", "snowwat"
21 |            "longname",     "snow mixing ratio"
22 |            "units",        "kg/kg"
23 |        "profile_type", "fixed", "surface_value=1.e30" /
24 |  "TRACER", "atmos_mod", "graupel"
25 |            "longname",     "graupel mixing ratio"
26 |            "units",        "kg/kg"
27 |        "profile_type", "fixed", "surface_value=1.e30" /
28 | # prognostic ozone mixing ratio tracer
29 |  "TRACER", "atmos_mod", "o3mr"
30 |            "longname",     "ozone mixing ratio"
31 |            "units",        "kg/kg"
32 |        "profile_type", "fixed", "surface_value=1.e30" /
33 | # non-prognostic cloud amount
34 |  "TRACER", "atmos_mod", "cld_amt"
35 |            "longname",     "cloud amount"
36 |            "units",        "1"
37 |        "profile_type", "fixed", "surface_value=1.e30" /
38 | 


--------------------------------------------------------------------------------
/cime_config/tables/field_table_mrweather:
--------------------------------------------------------------------------------
 1 | # added by FRE: sphum must be present in atmos
 2 | # specific humidity for moist runs
 3 |  "TRACER", "atmos_mod", "sphum"
 4 |            "longname",     "specific humidity"
 5 |            "units",        "kg/kg"
 6 |        "profile_type", "fixed", "surface_value=1.e30" /
 7 | # prognostic cloud water mixing ratio
 8 |  "TRACER", "atmos_mod", "liq_wat"
 9 |            "longname",     "cloud water mixing ratio"
10 |            "units",        "kg/kg"
11 |        "profile_type", "fixed", "surface_value=1.e30" /
12 |  "TRACER", "atmos_mod", "rainwat"
13 |            "longname",     "rain mixing ratio"
14 |            "units",        "kg/kg"
15 |        "profile_type", "fixed", "surface_value=1.e30" /
16 |  "TRACER", "atmos_mod", "ice_wat"
17 |            "longname",     "cloud ice mixing ratio"
18 |            "units",        "kg/kg"
19 |        "profile_type", "fixed", "surface_value=1.e30" /
20 |  "TRACER", "atmos_mod", "snowwat"
21 |            "longname",     "snow mixing ratio"
22 |            "units",        "kg/kg"
23 |        "profile_type", "fixed", "surface_value=1.e30" /
24 |  "TRACER", "atmos_mod", "graupel"
25 |            "longname",     "graupel mixing ratio"
26 |            "units",        "kg/kg"
27 |        "profile_type", "fixed", "surface_value=1.e30" /
28 | # prognostic ozone mixing ratio tracer
29 |  "TRACER", "atmos_mod", "o3mr"
30 |            "longname",     "ozone mixing ratio"
31 |            "units",        "kg/kg"
32 |        "profile_type", "fixed", "surface_value=1.e30" /
33 | # non-prognostic cloud amount
34 |  "TRACER", "atmos_mod", "cld_amt"
35 |            "longname",     "cloud amount"
36 |            "units",        "1"
37 |        "profile_type", "fixed", "surface_value=1.e30" /
38 | 


--------------------------------------------------------------------------------
/cime_config/config_component.xml:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0"?>
 2 | 
 3 | <?xml-stylesheet type="text/xsl" href="definitions_variables.xsl" ?>
 4 | 
 5 | <entry_id version="3.0">
 6 | 
 7 |   <description>
 8 |     <desc atm="ufsatm[%v15p2][%v16beta][%v0nocp][%2017coupled]">UFSATM Atmosphere with:</desc>
 9 |     <desc option="v15p2">CCPP physics version 15p2</desc>
10 |     <desc option="v16beta">CCPP physics version 16beta</desc>
11 |     <desc option="v0nocp">CCPP physics version for hafs</desc>
12 |     <desc option="2017coupled">CCPP physics version for S2S</desc>
13 |   </description>
14 | 
15 |   <entry id="COMP_ATM">
16 |     <type>char</type>
17 |     <valid_values>ufsatm</valid_values>
18 |     <default_value>ufsatm</default_value>
19 |     <group>case_comp</group>
20 |     <file>env_case.xml</file>
21 |     <desc>ufsatm Atmosphere component</desc>
22 |   </entry>
23 | 
24 |   <entry id="BUILD_CCPP">
25 |     <type>logical</type>
26 |     <default_value>TRUE</default_value>
27 |     <group>case_comp</group>
28 |     <file>env_build.xml</file>
29 |     <desc>Option for ufsatm CCPP feature</desc>
30 |   </entry>
31 | 
32 |   <entry id="CCPP_SUITES">
33 |     <type>char</type>
34 |     <valid_values>FV3_GFS_2017_coupled,FV3_GFS_v15p2,FV3_GFS_v16beta,HAFS_v0_gfdlmp_nocpugwd,HAFS_v0_gfdlmp_nocp,HAFS_v0_gfdlmp</valid_values>
35 |     <default_value>FV3_GFS_v15p2</default_value>
36 |     <values match="first">
37 |       <value compset="2017coupled">FV3_GFS_2017_coupled</value>
38 |       <value compset="v15p2">FV3_GFS_v15p2</value>
39 |       <value compset="v16beta">FV3_GFS_v16beta</value>
40 |       <value compset="v0nocp">HAFS_v0_gfdlmp_nocp</value>
41 |     </values>
42 |     <group>case_comp</group>
43 |     <file>env_build.xml</file>
44 |     <desc>Suite option for CCPP physics package</desc>
45 |   </entry>
46 | 
47 |   <entry id="BUILD_32BIT">
48 |     <type>logical</type>
49 |     <default_value>FALSE</default_value>
50 |     <values match="first">
51 |       <value compset="v15p2">FALSE</value>
52 |       <value compset="v16beta">FALSE</value>
53 |       <value compset="v0nocp">TRUE</value>
54 |     </values>
55 |     <group>case_comp</group>
56 |     <file>env_build.xml</file>
57 |     <desc>Option for building ufsatm dycore in 32 bit mode</desc>
58 |   </entry>
59 | 
60 |   <help>
61 |     =========================================
62 |     Say something
63 |     =========================================
64 |   </help>
65 | 
66 | </entry_id>
67 | 


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/cime_config/config_compsets.xml:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0"?>
 2 | 
 3 | <compsets>
 4 | 
 5 |   <help>
 6 |     =========================================
 7 |     compset naming convention
 8 |     =========================================
 9 |     The compset longname below has the specified order
10 |     atm, lnd, ice, ocn, river, glc wave cesm-options
11 | 
12 |     The notation for the compset longname is
13 |     TIME_ATM[%phys]_LND[%phys]_ICE[%phys]_OCN[%phys]_ROF[%phys]_GLC[%phys]_WAV[%phys][_BGC%phys]
14 |     Where for the CAM specific compsets below the following is supported
15 |     TIME = Time period (e.g. 2000, HIST, RCP8...)
16 |     ATM  = [CAM4, CAM5]
17 |     LND  = [CLM40, CLM45, CLM50, SLND]
18 |     ICE  = [CICE, DICE, SICE]
19 |     OCN  = [DOCN, ,AQUAP, SOCN]
20 |     ROF  = [RTM, SROF]
21 |     GLC  = [CISM1, CISM2, SGLC]
22 |     WAV  = [SWAV]
23 |     BGC  = optional BGC scenario
24 | 
25 |     The OPTIONAL %phys attributes specify submodes of the given system
26 |     For example DOCN%DOM is the data ocean model for DOCN
27 |     ALL the possible %phys choices for each component are listed
28 |     with the -list command for create_newcase
29 |     ALL data models must have a %phys option that corresponds to the data  model mode
30 | 
31 |     Each compset node is associated with the following elements
32 |     - lname
33 |     - alias
34 |     - support  (optional description of the support level for this compset)
35 |     Each compset node can also have the following attributes
36 |     - grid  (optional regular expression match for grid to work with the compset)
37 |   </help>
38 | 
39 |   <!-- F compsets -->
40 |   <compset>
41 |     <alias>GFSv15p2</alias>
42 |     <lname>FCST_ufsatm%v15p2_SLND_SICE_SOCN_SROF_SGLC_SWAV</lname>
43 |   </compset>
44 |   <compset>
45 |     <alias>GFSv16beta</alias>
46 |     <lname>FCST_ufsatm%v16beta_SLND_SICE_SOCN_SROF_SGLC_SWAV</lname>
47 |   </compset>
48 |   <compset>
49 |     <alias>HAFS</alias>
50 |     <lname>FCST_ufsatm%v0nocp_SLND_SICE_SOCN_SROF_SGLC_SWAV</lname>
51 |   </compset>
52 | 
53 |   <entries>
54 |     <entry id="RUN_STARTDATE">
55 |       <values>
56 | 	<!-- default value for testing -->
57 | 	<value compset="FCST_ufsatm%v1">2019-08-29</value>
58 | 	<value compset="FCST_ufsatm%v0">2019-09-01</value>
59 |       </values>
60 |     </entry>
61 |     <entry id="START_TOD">
62 |       <values>
63 |         <!-- default value for testing -->
64 |         <value compset="FCST_ufsatm%v1">0</value>
65 |         <value compset="FCST_ufsatm%v0">64800</value>
66 |       </values>
67 |     </entry>
68 |     <entry id="REST_N">
69 |       <values>
70 |         <!-- default value for testing -->
71 |         <value compset="FCST_ufsatm%v0">0</value>
72 |       </values>
73 |     </entry>
74 | 
75 |     <entry id="COMP_CLASSES">
76 |       <values>
77 | 	<value compset="ufsatm.*_SLND_SICE_SOCN_SROF_SGLC_SWAV">CPL,ATM</value>
78 | 	<value compset="ufsatm.*_SLND_CICE.*_MOM6.*_SROF_SGLC_SWAV">CPL,ATM,OCN,ICE</value>
79 | 	<value compset="ufsatm.*_SLND_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV">CPL,ATM,OCN,ICE</value>
80 |       </values>
81 |     </entry>
82 |     <entry id="CHECK_TIMING">
83 |       <values>
84 | 	<value compset="ufsatm.*_SLND_SICE_SOCN_SROF_SGLC_SWAV">FALSE</value>
85 |       </values>
86 |     </entry>
87 |   </entries>
88 | </compsets>
89 | 


--------------------------------------------------------------------------------
/cime_config/configure_cime.cmake:
--------------------------------------------------------------------------------
 1 | message("")
 2 | message("Setting configuration for $ENV{CMAKE_Platform}")
 3 | message("")
 4 | include( $ENV{CASEROOT}/Macros.cmake )
 5 | 
 6 | get_filename_component (C_COMPILER_NAME ${MPICC} NAME)
 7 | get_filename_component (CXX_COMPILER_NAME ${MPICXX} NAME)
 8 | get_filename_component (Fortran_COMPILER_NAME ${MPIFC} NAME)
 9 | message("C       compiler: ${CMAKE_C_COMPILER_ID} ${CMAKE_C_COMPILER_VERSION} (${C_COMPILER_NAME})")
10 | message("CXX     compiler: ${CMAKE_CXX_COMPILER_ID} ${CMAKE_CXX_COMPILER_VERSION} (${CXX_COMPILER_NAME})")
11 | message("Fortran compiler: ${CMAKE_Fortran_COMPILER_ID} ${CMAKE_Fortran_COMPILER_VERSION} (${Fortran_COMPILER_NAME})")
12 | message("")
13 | 
14 | option(DEBUG   "Enable DEBUG mode" OFF)
15 | option(REPRO   "Enable REPRO mode" OFF)
16 | option(VERBOSE "Enable VERBOSE mode" OFF)
17 | option(32BIT   "Enable 32BIT (single precision arithmetic in dycore)" OFF)
18 | option(OPENMP  "Enable OpenMP threading" ON)
19 | option(AVX2    "Enable AVX2 instruction set" OFF)
20 | 
21 | option(INLINE_POST "Enable inline post" OFF)
22 | 
23 | message("1: CMAKE_Fortran_FLAGS ${CMAKE_Fortran_FLAGS}")
24 | set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${FFLAGS}")
25 | message("2: CMAKE_Fortran_FLAGS ${CMAKE_Fortran_FLAGS}")
26 | 
27 | if(32BIT)
28 |     set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${FC_32BIT}")
29 |     add_definitions(-DOVERLOAD_R4)
30 |     add_definitions(-DOVERLOAD_R8)
31 | else()
32 |     set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${FC_64BIT}")
33 |     if(REPRO)
34 |         message("here NOT ${REPRO}")
35 |     else()
36 |         set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${FC_FAST}")
37 |     endif()
38 | endif()
39 | message("3: CMAKE_Fortran_FLAGS ${CMAKE_Fortran_FLAGS}")
40 | 
41 | if(REPRO)
42 |     add_definitions(-DREPRO)
43 |     set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${FC_REPRO}")
44 |     set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${CC_REPRO}")
45 | endif()
46 | 
47 | message("4: CMAKE_Fortran_FLAGS ${CMAKE_Fortran_FLAGS}")
48 | 
49 | set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -D__IFC ${CFLAGS}")
50 | set (CMAKE_EXE_LINKER_FLAGS "${LDFLAGS} ${SLIBS}")
51 | # print build options
52 | message("5: CMAKE_C_FLAGS ${CMAKE_C_FLAGS}")
53 | 
54 | if(DEBUG)
55 |     message("DEBUG  is      ENABLED")
56 | else()
57 |     message("DEBUG  is      disabled")
58 | endif()
59 | 
60 | if(REPRO)
61 |     message("REPRO  is      ENABLED")
62 | else()
63 |     message("REPRO  is      disabled")
64 | endif()
65 | 
66 | if(32BIT)
67 |     message("32BIT  is      ENABLED")
68 | else()
69 |     message("32BIT  is      disabled")
70 | endif()
71 | 
72 | if(OPENMP)
73 |     message("OPENMP is      ENABLED")
74 | else()
75 |     message("OPENMP is      disabled")
76 | endif()
77 | 
78 | if(INLINE_POST)
79 |     message("INLINE_POST is ENABLED")
80 | else()
81 |     message("INLINE_POST is disabled")
82 | endif()
83 | 
84 | 
85 | set(NEMSIO_INC $ENV{NEMSIO_INC})
86 | set(POST_INC $ENV{POST_INC})
87 | set(NCEP_LIBS $ENV{POST_LIB} $ENV{NEMSIO_LIB} $ENV{G2_LIB4} $ENV{G2TMPL_LIB} $ENV{BACIO_LIB4} $ENV{SP_LIBd} $ENV{W3EMC_LIBd} $ENV{W3NCO_LIBd} $ENV{CRTM_LIB} $ENV{PNG_LIB} $ENV{JASPER_LIB} $ENV{Z_LIB})
88 | 
89 | set(ESMF_MOD ${ESMF_F90COMPILEPATHS})
90 | set(ESMF_LIBS "${ESMF_F90ESMFLINKRPATHS} ${ESMF_F90ESMFLINKPATHS} ${ESMF_F90ESMFLINKLIBS}")
91 | 
92 | set(NETCDF_INC_DIR $ENV{NETCDF}/include)
93 | set(NETCDF_LIBDIR $ENV{NETCDF}/lib)
94 | set(NETCDF_LIBS -L$ENV{NETCDF}/lib -lnetcdff -lnetcdf)
95 | 
96 | message("")
97 | 


--------------------------------------------------------------------------------
/cime_config/config_pes.xml:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | 
  3 | <config_pes>
  4 |   <grid name="a%C96.+oi%tn0.25v3">
  5 |     <mach name="any">
  6 |       <pes pesize="any" compset="ufsatm.+CICE.+MOM">
  7 | 	<comment>none</comment>
  8 | 	<ntasks>
  9 | 	  <ntasks_atm>108</ntasks_atm>
 10 | 	  <ntasks_rof>1</ntasks_rof>
 11 | 	  <ntasks_ocn>108</ntasks_ocn>
 12 | 	  <ntasks_ice>108</ntasks_ice>
 13 | 	  <ntasks_cpl>108</ntasks_cpl>
 14 | 	  <ntasks_lnd>1</ntasks_lnd>
 15 | 	  <ntasks_glc>1</ntasks_glc>
 16 | 	  <ntasks_wav>1</ntasks_wav>
 17 | 	</ntasks>
 18 | 	<nthrds>
 19 | 	  <nthrds_atm>1</nthrds_atm>
 20 | 	  <nthrds_lnd>1</nthrds_lnd>
 21 | 	  <nthrds_rof>1</nthrds_rof>
 22 | 	  <nthrds_ice>1</nthrds_ice>
 23 | 	  <nthrds_ocn>1</nthrds_ocn>
 24 | 	  <nthrds_glc>1</nthrds_glc>
 25 | 	  <nthrds_wav>1</nthrds_wav>
 26 | 	  <nthrds_cpl>1</nthrds_cpl>
 27 | 	</nthrds>
 28 | 	<rootpe>
 29 | 	  <rootpe_atm>0</rootpe_atm>
 30 | 	  <rootpe_rof>0</rootpe_rof>
 31 | 	  <rootpe_ice>0</rootpe_ice>
 32 | 	  <rootpe_ocn>0</rootpe_ocn>
 33 | 	  <rootpe_cpl>0</rootpe_cpl>
 34 | 	  <rootpe_lnd>0</rootpe_lnd>
 35 | 	  <rootpe_glc>0</rootpe_glc>
 36 | 	  <rootpe_wav>0</rootpe_wav>
 37 | 	</rootpe>
 38 |       </pes>
 39 |     </mach>
 40 |   </grid>
 41 | 
 42 |   <grid name="a%C96.+oi%tx0.25v1">
 43 |     <mach name="any">
 44 |       <pes pesize="any" compset="ufsatm.+CICE.+MOM">
 45 | 	<comment>none</comment>
 46 | 	<ntasks>
 47 | 	  <ntasks_atm>150</ntasks_atm>
 48 | 	  <ntasks_rof>1</ntasks_rof>
 49 | 	  <ntasks_ocn>360</ntasks_ocn>
 50 | 	  <ntasks_ice>360</ntasks_ice>
 51 | 	  <ntasks_cpl>150</ntasks_cpl>
 52 | 	  <ntasks_lnd>1</ntasks_lnd>
 53 | 	  <ntasks_glc>1</ntasks_glc>
 54 | 	  <ntasks_wav>1</ntasks_wav>
 55 | 	</ntasks>
 56 | 	<nthrds>
 57 | 	  <nthrds_atm>1</nthrds_atm>
 58 | 	  <nthrds_lnd>1</nthrds_lnd>
 59 | 	  <nthrds_rof>1</nthrds_rof>
 60 | 	  <nthrds_ice>1</nthrds_ice>
 61 | 	  <nthrds_ocn>1</nthrds_ocn>
 62 | 	  <nthrds_glc>1</nthrds_glc>
 63 | 	  <nthrds_wav>1</nthrds_wav>
 64 | 	  <nthrds_cpl>1</nthrds_cpl>
 65 | 	</nthrds>
 66 | 	<rootpe>
 67 | 	  <rootpe_atm>0</rootpe_atm>
 68 | 	  <rootpe_rof>0</rootpe_rof>
 69 | 	  <rootpe_ice>0</rootpe_ice>
 70 | 	  <rootpe_ocn>360</rootpe_ocn>
 71 | 	  <rootpe_cpl>0</rootpe_cpl>
 72 | 	  <rootpe_lnd>0</rootpe_lnd>
 73 | 	  <rootpe_glc>0</rootpe_glc>
 74 | 	  <rootpe_wav>0</rootpe_wav>
 75 | 	</rootpe>
 76 |       </pes>
 77 |     </mach>
 78 |   </grid>
 79 | 
 80 |   <grid name="a%C384.+oi%tx0.25v1">
 81 |     <mach name="any">
 82 |       <pes pesize="any" compset="ufsatm.+CICE.+MOM">
 83 | 	<comment>none</comment>
 84 | 	<ntasks>
 85 | 	  <ntasks_atm>336</ntasks_atm>
 86 | 	  <ntasks_rof>1</ntasks_rof>
 87 | 	  <ntasks_ocn>360</ntasks_ocn>
 88 | 	  <ntasks_ice>360</ntasks_ice>
 89 | 	  <ntasks_cpl>336</ntasks_cpl>
 90 | 	  <ntasks_lnd>1</ntasks_lnd>
 91 | 	  <ntasks_glc>1</ntasks_glc>
 92 | 	  <ntasks_wav>1</ntasks_wav>
 93 | 	</ntasks>
 94 | 	<nthrds>
 95 | 	  <nthrds_atm>1</nthrds_atm>
 96 | 	  <nthrds_lnd>1</nthrds_lnd>
 97 | 	  <nthrds_rof>1</nthrds_rof>
 98 | 	  <nthrds_ice>1</nthrds_ice>
 99 | 	  <nthrds_ocn>1</nthrds_ocn>
100 | 	  <nthrds_glc>1</nthrds_glc>
101 | 	  <nthrds_wav>1</nthrds_wav>
102 | 	  <nthrds_cpl>1</nthrds_cpl>
103 | 	</nthrds>
104 | 	<rootpe>
105 | 	  <rootpe_atm>0</rootpe_atm>
106 | 	  <rootpe_rof>0</rootpe_rof>
107 | 	  <rootpe_ice>696</rootpe_ice>
108 | 	  <rootpe_ocn>336</rootpe_ocn>
109 | 	  <rootpe_cpl>0</rootpe_cpl>
110 | 	  <rootpe_lnd>0</rootpe_lnd>
111 | 	  <rootpe_glc>0</rootpe_glc>
112 | 	  <rootpe_wav>0</rootpe_wav>
113 | 	</rootpe>
114 |       </pes>
115 |     </mach>
116 |   </grid>
117 | 
118 |   <grid name="a%C96.*oi%tx0.66v1.*">
119 |     <mach name="any">
120 |       <pes pesize="any" compset="ufsatm%v1">
121 |         <comment>none</comment>
122 |         <ntasks>
123 |           <ntasks_atm>108</ntasks_atm>
124 |           <ntasks_ocn>108</ntasks_ocn>
125 |           <ntasks_ice>108</ntasks_ice>
126 |         </ntasks>
127 |         <nthrds>
128 |           <nthrds_atm>1</nthrds_atm>
129 |           <nthrds_ocn>1</nthrds_ocn>
130 |           <nthrds_ice>1</nthrds_ice>
131 | 	</nthrds>
132 |       </pes>
133 |     </mach>
134 |   </grid>
135 | 
136 |   <grid name="a%C96">
137 |     <mach name="macos">
138 |       <pes pesize="any" compset="ufsatm%v1">
139 |         <comment>none</comment>
140 |         <ntasks>
141 |           <ntasks_atm>8</ntasks_atm>
142 |         </ntasks>
143 |         <nthrds>
144 |           <nthrds_atm>1</nthrds_atm>
145 | 	</nthrds>
146 |       </pes>
147 |     </mach>
148 |   </grid>
149 | 
150 |   <grid name="a%C96">
151 |     <mach name="linux">
152 |       <pes pesize="any" compset="ufsatm">
153 |         <comment>none</comment>
154 |         <ntasks>
155 |           <ntasks_atm>8</ntasks_atm>
156 |         </ntasks>
157 |         <nthrds>
158 |           <nthrds_atm>1</nthrds_atm>
159 | 	</nthrds>
160 |       </pes>
161 |     </mach>
162 |   </grid>
163 | 
164 |   <grid name="a%C96">
165 |     <mach name="any">
166 |       <pes pesize="any" compset="ufsatm%v1">
167 |         <comment>none</comment>
168 |         <ntasks>
169 |           <ntasks_atm>108</ntasks_atm>
170 |         </ntasks>
171 |         <nthrds>
172 |           <nthrds_atm>1</nthrds_atm>
173 | 	</nthrds>
174 |       </pes>
175 |     </mach>
176 |   </grid>
177 | 
178 |   <grid name="a%C192">
179 |     <mach name="any">
180 |       <pes pesize="any" compset="ufsatm%v1">
181 |         <comment>none</comment>
182 |         <ntasks>
183 |           <ntasks_atm>180</ntasks_atm>
184 |         </ntasks>
185 |         <nthrds>
186 |           <nthrds_atm>1</nthrds_atm>
187 |         </nthrds>
188 |       </pes>
189 |     </mach>
190 |   </grid>
191 | 
192 |   <grid name="a%C384">
193 |     <mach name="any">
194 |       <pes pesize="any" compset="ufsatm%v1">
195 |         <comment>none</comment>
196 |         <ntasks>
197 |           <ntasks_atm>252</ntasks_atm>
198 |         </ntasks>
199 |         <nthrds>
200 |           <nthrds_atm>1</nthrds_atm>
201 |         </nthrds>
202 |       </pes>
203 |     </mach>
204 |   </grid>
205 | 
206 |   <grid name="a%C768">
207 |     <mach name="any">
208 |       <pes pesize="any" compset="ufsatm%v1">
209 |         <comment>none</comment>
210 |         <ntasks>
211 |           <ntasks_atm>684</ntasks_atm>
212 |         </ntasks>
213 |         <nthrds>
214 |           <nthrds_atm>4</nthrds_atm>
215 |         </nthrds>
216 |       </pes>
217 |     </mach>
218 |   </grid>
219 | 
220 |   <grid name="a%C768r">
221 |     <mach name="any">
222 |       <pes pesize="any" compset="ufsatm%v0">
223 |         <comment>none</comment>
224 |         <ntasks>
225 |           <ntasks_atm>1320</ntasks_atm>
226 |         </ntasks>
227 |         <nthrds>
228 |           <nthrds_atm>2</nthrds_atm>
229 |         </nthrds>
230 |       </pes>
231 |     </mach>
232 |   </grid>
233 | </config_pes>
234 | 


--------------------------------------------------------------------------------
/cime_config/testlist.xml:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0"?>
  2 | <testlist version="2.0">
  3 |   <!-- C96 -->
  4 |   <test compset="GFSv15p2" grid="C96" name="SMS_Lh3">
  5 |     <machines>
  6 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
  7 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
  8 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p1"/>
  9 |       <machine name="orion" compiler="intel" category="prealpha"/>
 10 |     </machines>
 11 |     <options>
 12 |       <option name="workflow">ufs-mrweather_wo_post</option>
 13 |       <option name="wallclock">00:30:00</option>
 14 |     </options>
 15 |   </test>
 16 |   <test compset="GFSv16beta" grid="C96" name="SMS_Lh3">
 17 |     <machines>
 18 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
 19 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
 20 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p1"/>
 21 |       <machine name="orion" compiler="intel" category="prealpha"/>
 22 |     </machines>
 23 |     <options>
 24 |       <option name="workflow">ufs-mrweather_wo_post</option>
 25 |       <option name="wallclock">00:30:00</option>
 26 |     </options>
 27 |   </test>
 28 |   <test compset="GFSv15p2" grid="C96" name="SMS_Lh3_D">
 29 |     <machines>
 30 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
 31 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
 32 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p1"/>
 33 |       <machine name="orion" compiler="intel" category="prealpha"/>
 34 |     </machines>
 35 |     <options>
 36 |       <option name="workflow">ufs-mrweather_wo_post</option>
 37 |       <option name="wallclock">01:00:00</option>
 38 |     </options>
 39 |   </test>
 40 |   <test compset="GFSv16beta" grid="C96" name="SMS_Lh3_D">
 41 |     <machines>
 42 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
 43 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
 44 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p1"/>
 45 |       <machine name="orion" compiler="intel" category="prealpha"/>
 46 |     </machines>
 47 |     <options>
 48 |       <option name="workflow">ufs-mrweather_wo_post</option>
 49 |       <option name="wallclock">01:00:00</option>
 50 |     </options>
 51 |   </test>
 52 |   <test compset="GFSv15p2" grid="C96" name="ERS_Lh11">
 53 |     <machines>
 54 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
 55 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
 56 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p1"/>
 57 |       <machine name="orion" compiler="intel" category="prealpha"/>
 58 |     </machines>
 59 |     <options>
 60 |       <option name="workflow">ufs-mrweather_wo_post</option>
 61 |       <option name="wallclock">00:30:00</option>
 62 |     </options>
 63 |   </test>
 64 |   <test compset="GFSv16beta" grid="C96" name="ERS_Lh11">
 65 |     <machines>
 66 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
 67 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
 68 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p1"/>
 69 |       <machine name="orion" compiler="intel" category="prealpha"/>
 70 |     </machines>
 71 |     <options>
 72 |       <option name="workflow">ufs-mrweather_wo_post</option>
 73 |       <option name="wallclock">00:30:00</option>
 74 |     </options>
 75 |   </test>
 76 |   <test compset="GFSv15p2" grid="C96" name="PET_Lh11">
 77 |     <machines>
 78 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
 79 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
 80 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p2"/>
 81 |       <machine name="orion" compiler="intel" category="prealpha"/>
 82 |     </machines>
 83 |     <options>
 84 |       <option name="workflow">ufs-mrweather_wo_post</option>
 85 |       <option name="wallclock">00:30:00</option>
 86 |     </options>
 87 |   </test>
 88 |   <!-- C192 -->
 89 |   <test compset="GFSv15p2" grid="C192" name="SMS_Lh3">
 90 |     <machines>
 91 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
 92 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
 93 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p2"/>
 94 |       <machine name="orion" compiler="intel" category="prealpha"/>
 95 |     </machines>
 96 |     <options>
 97 |       <option name="workflow">ufs-mrweather_wo_post</option>
 98 |       <option name="wallclock">01:00:00</option>
 99 |     </options>
100 |   </test>
101 |   <test compset="GFSv16beta" grid="C192" name="SMS_Lh3">
102 |     <machines>
103 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
104 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
105 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p2"/>
106 |       <machine name="orion" compiler="intel" category="prealpha"/>
107 |     </machines>
108 |     <options>
109 |       <option name="workflow">ufs-mrweather_wo_post</option>
110 |       <option name="wallclock">01:00:00</option>
111 |     </options>
112 |   </test>
113 |   <test compset="GFSv15p2" grid="C192" name="SMS_Lh3_D">
114 |     <machines>
115 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
116 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
117 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p2"/>
118 |       <machine name="orion" compiler="intel" category="prealpha"/>
119 |     </machines>
120 |     <options>
121 |       <option name="workflow">ufs-mrweather_wo_post</option>
122 |       <option name="wallclock">02:00:00</option>
123 |     </options>
124 |   </test>
125 |   <test compset="GFSv16beta" grid="C192" name="SMS_Lh3_D">
126 |     <machines>
127 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
128 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
129 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p2"/>
130 |       <machine name="orion" compiler="intel" category="prealpha"/>
131 |     </machines>
132 |     <options>
133 |       <option name="workflow">ufs-mrweather_wo_post</option>
134 |       <option name="wallclock">02:00:00</option>
135 |     </options>
136 |   </test>
137 |   <!-- C384 -->
138 |   <test compset="GFSv15p2" grid="C384" name="SMS_Lh3">
139 |     <machines>
140 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
141 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
142 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p2"/>
143 |       <machine name="orion" compiler="intel" category="prealpha"/>
144 |     </machines>
145 |     <options>
146 |       <option name="workflow">ufs-mrweather_wo_post</option>
147 |       <option name="wallclock">02:00:00</option>
148 |     </options>
149 |   </test>
150 |   <test compset="GFSv16beta" grid="C384" name="SMS_Lh3">
151 |     <machines>
152 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
153 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
154 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p3"/>
155 |       <machine name="orion" compiler="intel" category="prealpha"/>
156 |     </machines>
157 |     <options>
158 |       <option name="workflow">ufs-mrweather_wo_post</option>
159 |       <option name="wallclock">02:00:00</option>
160 |     </options>
161 |   </test>
162 |   <test compset="GFSv15p2" grid="C384" name="SMS_Lh3_D">
163 |     <machines>
164 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
165 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
166 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p3"/>
167 |       <machine name="orion" compiler="intel" category="prealpha"/>
168 |     </machines>
169 |     <options>
170 |       <option name="workflow">ufs-mrweather_wo_post</option>
171 |       <option name="wallclock">04:00:00</option>
172 |     </options>
173 |   </test>
174 |   <test compset="GFSv16beta" grid="C384" name="SMS_Lh3_D">
175 |     <machines>
176 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
177 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
178 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p3"/>
179 |       <machine name="orion" compiler="intel" category="prealpha"/>
180 |     </machines>
181 |     <options>
182 |       <option name="workflow">ufs-mrweather_wo_post</option>
183 |       <option name="wallclock">04:00:00</option>
184 |     </options>
185 |   </test>
186 |   <!-- C768 -->
187 |   <test compset="GFSv15p2" grid="C768" name="SMS_Lh3">
188 |     <machines>
189 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
190 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
191 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p3"/>
192 |       <machine name="orion" compiler="intel" category="prealpha"/>
193 |     </machines>
194 |     <options>
195 |       <option name="workflow">ufs-mrweather_wo_post</option>
196 |       <option name="wallclock">06:00:00</option>
197 |     </options>
198 |   </test>
199 |   <test compset="GFSv16beta" grid="C768" name="SMS_Lh3">
200 |     <machines>
201 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
202 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
203 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p3"/>
204 |       <machine name="orion" compiler="intel" category="prealpha"/>
205 |     </machines>
206 |     <options>
207 |       <option name="workflow">ufs-mrweather_wo_post</option>
208 |       <option name="wallclock">06:00:00</option>
209 |     </options>
210 |   </test>
211 |   <test compset="GFSv15p2" grid="C768" name="SMS_Lh3_D">
212 |     <machines>
213 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
214 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
215 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p3"/>
216 |       <machine name="orion" compiler="intel" category="prealpha"/>
217 |     </machines>
218 |     <options>
219 |       <option name="workflow">ufs-mrweather_wo_post</option>
220 |       <option name="wallclock">08:00:00</option>
221 |     </options>
222 |   </test>
223 |   <test compset="GFSv16beta" grid="C768" name="SMS_Lh3_D">
224 |     <machines>
225 |       <machine name="cheyenne" compiler="intel" category="prealpha"/>
226 |       <machine name="cheyenne" compiler="gnu" category="prealpha"/>
227 |       <machine name="stampede2-skx" compiler="intel" category="prealpha_p3"/>
228 |       <machine name="orion" compiler="intel" category="prealpha"/>
229 |     </machines>
230 |     <options>
231 |       <option name="workflow">ufs-mrweather_wo_post</option>
232 |       <option name="wallclock">08:00:00</option>
233 |     </options>
234 |   </test>
235 |   <!-- HAFS App -->
236 |   <!-- C768r -->
237 |   <test compset="HAFS" grid="C768r" name="SMS_Lh3">
238 |     <machines>
239 |       <machine name="orion" compiler="intel" category="hafs"/>
240 |     </machines>
241 |     <options>
242 |       <option name="wallclock">03:00:00</option>
243 |     </options>
244 |   </test>
245 |   <test compset="HAFS" grid="C768r" name="ERS_Lh11">
246 |     <machines>
247 |       <machine name="orion" compiler="intel" category="hafs"/>
248 |     </machines>
249 |     <options>
250 |       <option name="wallclock">03:00:00</option>
251 |     </options>
252 |   </test>
253 | </testlist>
254 | 


--------------------------------------------------------------------------------
/cime_config/buildlib:
--------------------------------------------------------------------------------
  1 | #!/usr/bin/env python
  2 | 
  3 | """
  4 | build ufsatm library
  5 | """
  6 | import sys, os
  7 | 
  8 | _CIMEROOT = os.environ.get("CIMEROOT")
  9 | if _CIMEROOT is None:
 10 |     raise SystemExit("ERROR: must set CIMEROOT environment variable")
 11 | 
 12 | _LIBDIR = os.path.join(_CIMEROOT, "scripts", "Tools")
 13 | sys.path.append(_LIBDIR)
 14 | 
 15 | from standard_script_setup import *
 16 | from CIME.buildlib import parse_input
 17 | from CIME.case import Case
 18 | from CIME.utils import run_cmd, expect, safe_copy, symlink_force
 19 | from CIME.build import get_standard_makefile_args
 20 | from CIME.XML.compilers import Compilers
 21 | from CIME.XML.machines import Machines
 22 | import six
 23 | 
 24 | logger = logging.getLogger(__name__)
 25 | 
 26 | def _build_ccpp_cmake_files(ccpp_blddir, ccpp_srcmods):
 27 |     """
 28 |     Set env variables CCPP_SCHEMES and CCPP_CAPS to the full path list of files to be compiled.
 29 |     Check the case SourceMods/src.ufsatm for files and update the env variables if required.
 30 |     """
 31 |     needs_update = False
 32 |     for ccppfile in ("SCHEMES","CAPS"):
 33 |         ccpp_srcfiles = []
 34 |         current_settings_fname = os.path.join(ccpp_blddir,"cime_cmake_{}.txt".format(ccppfile))
 35 |         current_settings = None
 36 |         if os.path.isfile(current_settings_fname):
 37 |             with open(current_settings_fname,"r") as fcs:
 38 |                 current_settings = fcs.read()
 39 | 
 40 |         with open(os.path.join(ccpp_blddir,"physics","CCPP_{}.cmake").format(ccppfile)) as fd:
 41 |             env_var = "CCPP_{}".format(ccppfile)
 42 |             for line in fd:
 43 |                 line = line.strip()
 44 |                 if os.path.isfile(line):
 45 |                     tfile = os.path.basename(line)
 46 |                     if os.path.isfile(os.path.join(ccpp_srcmods,tfile)):
 47 |                         line = os.path.join(ccpp_srcmods,tfile)
 48 |                     ccpp_srcfiles.append(line)
 49 |         os.environ[env_var] = ";".join(ccpp_srcfiles)
 50 |         if not current_settings or current_settings != os.environ[env_var]:
 51 |             needs_update = True
 52 |             with open(current_settings_fname,"w") as fw:
 53 |                 fw.write(os.environ[env_var])
 54 | 
 55 |     return needs_update
 56 | 
 57 | def _create_dir_structure(srcdir,targetdir, sourcemods=None):
 58 |     """
 59 |     Reproduce the directory structure of srcdir in targetdir with
 60 |     links to the files of srcdir.  If a sourcemods dir is provided and
 61 |     a file in the source tree matchs a file in the sourcemods directory
 62 |     link the sourcemods file instead
 63 |     """
 64 |     structure_updated = False
 65 |     for dirpath, _, filenames in os.walk(srcdir):
 66 |         structure = targetdir + dirpath[len(srcdir):]
 67 |         if not os.path.isdir(structure):
 68 |             os.mkdir(structure)
 69 |         for fname in filenames:
 70 |             # ignore some files
 71 |             if fname.startswith('.') or fname.startswith('#') or fname.startswith('~'):
 72 |                 continue
 73 |             newfullpath = os.path.join(structure,fname)
 74 |             if sourcemods and os.path.isfile(os.path.join(sourcemods,fname)):
 75 |                 # If file exists in case sourcemods use it
 76 |                 linkto = os.path.join(sourcemods,fname)
 77 |             else:
 78 |                 # otherwise link original file
 79 |                 linkto = os.path.join(dirpath,fname)
 80 | 
 81 |             # Broken link or link to wrong path - remove it
 82 |             if (os.path.lexists(newfullpath) and not os.path.exists(newfullpath)) or \
 83 |                (os.path.exists(newfullpath) and not os.path.samefile(linkto,newfullpath)):
 84 |                 os.unlink(newfullpath)
 85 |             # Create new link
 86 |             if not os.path.exists(newfullpath):
 87 |                 os.symlink(linkto, newfullpath)
 88 |                 structure_updated = True
 89 |     return structure_updated
 90 | 
 91 | def get_compiler_names(case):
 92 |     machobj = Machines(machine=case.get_value("MACH"))
 93 |     compobj = Compilers(machobj)
 94 |     ccomp = compobj.get_value("MPICC")
 95 |     cxxcomp = compobj.get_value("MPICXX")
 96 |     fcomp = compobj.get_value("MPIFC")
 97 | 
 98 |     return ccomp, cxxcomp, fcomp
 99 | 
100 | ###############################################################################
101 | #pylint: disable=unused-argument
102 | def buildlib(caseroot, libroot, bldroot):
103 | ###############################################################################
104 | 
105 |     with Case(caseroot) as case:
106 |         # retrieve variables
107 |         srcroot = case.get_value("SRCROOT")
108 |         compset = case.get_value("COMPSET")
109 |         comp_root_dir_atm = case.get_value("COMP_ROOT_DIR_ATM")
110 |         srcdir = os.path.join(srcroot,"src","model")
111 |         os.environ["CASEROOT"] = caseroot
112 | 
113 |         structure_updated = _create_dir_structure(srcdir,bldroot,
114 |                                sourcemods=os.path.join(caseroot,"SourceMods","src.ufsatm"))
115 | 
116 |         #Now build ccpp if needed
117 |         ccpp = case.get_value("BUILD_CCPP")
118 |         mode32bit = case.get_value("BUILD_32BIT")
119 |         gmake = case.get_value("GMAKE")
120 |         gmake_j = case.get_value("GMAKE_J")
121 |         debug = case.get_value("DEBUG")
122 |         cmake_flags = " -DCOMPILER={} ".format(case.get_value("COMPILER"))
123 |         cmake_flags += " -DMPILIB={} ".format(case.get_value("MPILIB"))
124 |         if debug:
125 |             cmake_flags += " -DDEBUG=TRUE "
126 |             cmake_flags += " -DCMAKE_BUILD_TYPE=Debug "
127 |         else:
128 |             cmake_flags += " -DDEBUG=FALSE "
129 | 
130 |         if not debug and case.get_value("TEST"):
131 |             if "PFS" not in case.get_value("TESTCASE"):
132 |                 cmake_flags += " -DREPRO=ON "
133 |                 cmake_flags += " -DCMAKE_BUILD_TYPE=Bitforbit "
134 |         comp_classes = case.get_values("COMP_CLASSES")
135 |         if ccpp:
136 |             ccpp_srcroot = os.path.join(comp_root_dir_atm,"ccpp")
137 |             ccpp_srcmods = os.path.join(caseroot,"SourceMods","src.ufsatm")
138 |             ccpp_suites = case.get_value("CCPP_SUITES")
139 |             # fix for UFS MR-Weather App
140 |             components = compset.split("_")[1:]
141 |             components = [ x for x in components if "S" not in x[0] ]
142 |             if os.path.isfile(os.path.join(ccpp_srcroot,"suites","suite_{}_no_nsst.xml".format(ccpp_suites))) and len(components) < 2:
143 |                 ccpp_suites += ","+ccpp_suites+"_no_nsst"
144 |             ccpp_blddir=os.path.join(bldroot,"FV3","ccpp")
145 |             if not os.path.exists(os.path.join(ccpp_blddir,"cime_cmake_CAPS.txt")):
146 |                 ccpp_preconfig = os.path.join(ccpp_srcroot,"framework","scripts","ccpp_prebuild.py")
147 |                 ccpp_config = os.path.join(ccpp_srcroot,"config","ccpp_prebuild_config.py")
148 |                 ccpp_options = "--config {} --suites={} --builddir {}".format(ccpp_config, ccpp_suites, os.path.join(bldroot,"FV3"))
149 |                 print("HERE comp_classes {}".format(comp_classes))
150 |                 # TODO: do not compile HAFS app with --static, it is not supported yet
151 |                 # this needs to be removed once UFSATM under HAFS is updated
152 |                 if len(comp_classes) < 3 and "HAFS" not in ccpp_suites:
153 |                     ccpp_options += " --static"
154 |                 stat, _, err = run_cmd("{} {}".format(ccpp_preconfig, ccpp_options),
155 |                                        verbose=True,
156 |                                        from_dir=srcdir)
157 |                 expect(stat==0,"ccpp_preconfig error from fv3 {}".format(err))
158 |                 _build_ccpp_cmake_files(ccpp_blddir,ccpp_srcmods)
159 | 
160 | 
161 |             cmake_flags += " -DCCPP=ON -DSUITES={} ".format(ccpp_suites)
162 | 
163 |         cmake_flags += " -DMPI=ON "
164 |         cmake_flags += " -DSTATIC=ON "
165 |         if mode32bit:
166 |             cmake_flags += " -D32BIT=ON "
167 | 
168 |         if case.get_value("BUILD_THREADED") or case.get_value("FORCE_BUILD_SMP") or case.get_value("SMP_PRESENT"):
169 |             cmake_flags += " -DOPENMP=ON -Dcompile_threaded=TRUE "
170 |         else:
171 |             cmake_flags += " -DOPENMP=OFF "
172 | 
173 |         mklroot = os.environ.get("MKLROOT")
174 |         if mklroot:
175 |             cmake_flags += " -DMKL_DIR={}".format(mklroot)
176 |         for name in ("NETCDF", "NETCDF_DIR", "NETCDF_PATH", "TACC_NETCDF_DIR", "NETCDFROOT"):
177 |             netcdf = os.environ.get(name)
178 |             if netcdf:
179 |                 cmake_flags += " -DNETCDF_DIR={} ".format(netcdf)
180 |                 break
181 |         if not netcdf:
182 |             # one last try
183 |             from distutils.spawn import find_executable
184 |             netcdf = find_executable("ncdump")
185 |             if netcdf:
186 |                 if six.PY3:
187 |                     netcdf = os.path.dirname(netcdf).parent
188 |                 else:
189 |                     netcdf = os.path.abspath(os.path.join(netcdf, os.pardir))
190 |                 cmake_flags += " -DNETCDF_DIR={} ".format(netcdf)
191 |         # This is the variable expected in configure_cime.cmake
192 |         os.environ["NETCDF"] = netcdf
193 |         ccomp, cxxcomp, fcomp = get_compiler_names(case)
194 |         os.environ["CMAKE_C_COMPILER"]=ccomp.strip()
195 |         os.environ["CMAKE_CXX_COMPILER"]=cxxcomp.strip()
196 |         os.environ["CMAKE_Fortran_COMPILER"]=fcomp.strip()
197 |         if structure_updated or not os.path.exists(os.path.join(bldroot,"CMakeFiles")):
198 |             cmake_flags += " -C {}".format(os.path.join(bldroot,"cmake","configure_cime.cmake"))
199 |             print "HERE {} {} {}".format( os.environ["CMAKE_C_COMPILER"], os.environ["CMAKE_CXX_COMPILER"], os.environ["CMAKE_Fortran_COMPILER"])
200 |             os.environ["CMAKE_Platform"]="cime"
201 |             safe_copy(os.path.join(comp_root_dir_atm,"cime","cime_config","configure_cime.cmake"),
202 |                       os.path.join(bldroot,"cmake"))
203 | 
204 |             logger.info("Calling cmake {} {}".format(cmake_flags, bldroot))
205 |             stat, _, err = run_cmd("cmake {} {} ".format(cmake_flags,bldroot),from_dir=bldroot,verbose=True)
206 |             expect(stat==0,"CMAKE error from fv3 {}".format(err))
207 |         gmake_args = "-j {} ".format(gmake_j)+get_standard_makefile_args(case)
208 |         gmake_args += " VERBOSE=1 "
209 |         stat, _, err = run_cmd("{} {}".format(gmake,gmake_args),from_dir=bldroot,verbose=True)
210 |         expect(stat==0,"Build error from fv3 {}".format(err))
211 | 
212 |         if os.path.exists(os.path.join(bldroot,"FMS","libfms.a")):
213 |             safe_copy(os.path.join(bldroot,"FMS","libfms.a"), libroot)
214 | 
215 |         # This step is needed for CIME build
216 |         if "CPL" in comp_classes:
217 |             nuopc_cap_src = os.path.join(bldroot,"FV3","cime","cime_config","cpl")
218 |             filepath_file = os.path.join(nuopc_cap_src,"Filepath")
219 | 
220 |             if not os.path.exists(filepath_file):
221 |                 with open(filepath_file, "w") as fp:
222 |                     fp.write(os.path.join(caseroot,"SourceMods","src.ufsatm"))
223 |                     fp.write(os.path.join(nuopc_cap_src))
224 |             complib = os.path.join(libroot,"libatm.a")
225 |             makefile = os.path.join(case.get_value("CASETOOLS"),"Makefile")
226 | 
227 |             cmd = "{} complib -j {} MODEL=ufsatm COMPLIB={} -f {} {} USER_INCLDIR=-I{} " \
228 |                 .format(gmake, gmake_j, complib, makefile, get_standard_makefile_args(case), os.path.join(bldroot,"FV3","mod"))
229 | 
230 |             rc, out, err = run_cmd(cmd, from_dir=nuopc_cap_src )
231 |             expect(rc == 0, "Command %s failed rc=%d\nout=%s\nerr=%s" % (cmd, rc, out, err))
232 |             safe_copy(os.path.join(nuopc_cap_src,"atm_comp_nuopc.mod"),os.path.join(libroot,"include"))
233 | 
234 | def _main_func():
235 |     caseroot, libroot, bldroot = parse_input(sys.argv)
236 |     buildlib(caseroot, libroot, bldroot)
237 | 
238 | ###############################################################################
239 | 
240 | if __name__ == "__main__":
241 |     _main_func()
242 | 


--------------------------------------------------------------------------------
/cime_config/tables/diag_table_s2s:
--------------------------------------------------------------------------------
  1 | 20161003.00Z.C96.64bit.non-mono
  2 | 2016 10 03 00 0 0
  3 | 
  4 | "grid_spec",              -1,  "months",   1, "days",  "time"
  5 | "atmos_4xdaily",           6,  "hours",    1, "days",  "time"
  6 | "atmos_static",           -1,  "hours",    1, "hours", "time"
  7 | "fv3_history",    0,  "hours",  1,  "hours",  "time"
  8 | "fv3_history2d",  0,  "hours",  1,  "hours",  "time"
  9 | 
 10 | #
 11 | #=======================
 12 | # ATMOSPHERE DIAGNOSTICS
 13 | #=======================
 14 | ###
 15 | # grid_spec
 16 | ###
 17 |  "dynamics", "grid_lon", "grid_lon", "grid_spec", "all", .false.,  "none", 2,
 18 |  "dynamics", "grid_lat", "grid_lat", "grid_spec", "all", .false.,  "none", 2,
 19 |  "dynamics", "grid_lont", "grid_lont", "grid_spec", "all", .false.,  "none", 2,
 20 |  "dynamics", "grid_latt", "grid_latt", "grid_spec", "all", .false.,  "none", 2,
 21 |  "dynamics", "area",     "area",     "grid_spec", "all", .false.,  "none", 2,
 22 | ###
 23 | # 4x daily output
 24 | ###
 25 |  "dynamics",  "slp",         "slp",        "atmos_4xdaily", "all", .false.,  "none", 2
 26 |  "dynamics",  "vort850",     "vort850",    "atmos_4xdaily", "all", .false.,  "none", 2
 27 |  "dynamics",  "vort200",     "vort200",    "atmos_4xdaily", "all", .false.,  "none", 2
 28 |  "dynamics",  "us",          "us",         "atmos_4xdaily", "all", .false.,  "none", 2
 29 |  "dynamics",  "u1000",       "u1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 30 |  "dynamics",  "u850",        "u850",       "atmos_4xdaily", "all", .false.,  "none", 2
 31 |  "dynamics",  "u700",        "u700",       "atmos_4xdaily", "all", .false.,  "none", 2
 32 |  "dynamics",  "u500",        "u500",       "atmos_4xdaily", "all", .false.,  "none", 2
 33 |  "dynamics",  "u200",        "u200",       "atmos_4xdaily", "all", .false.,  "none", 2
 34 |  "dynamics",  "u100",        "u100",       "atmos_4xdaily", "all", .false.,  "none", 2
 35 |  "dynamics",  "u50",         "u50",        "atmos_4xdaily", "all", .false.,  "none", 2
 36 |  "dynamics",  "u10",         "u10",        "atmos_4xdaily", "all", .false.,  "none", 2
 37 |  "dynamics",  "vs",          "vs",         "atmos_4xdaily", "all", .false.,  "none", 2
 38 |  "dynamics",  "v1000",       "v1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 39 |  "dynamics",  "v850",        "v850",       "atmos_4xdaily", "all", .false.,  "none", 2
 40 |  "dynamics",  "v700",        "v700",       "atmos_4xdaily", "all", .false.,  "none", 2
 41 |  "dynamics",  "v500",        "v500",       "atmos_4xdaily", "all", .false.,  "none", 2
 42 |  "dynamics",  "v200",        "v200",       "atmos_4xdaily", "all", .false.,  "none", 2
 43 |  "dynamics",  "v100",        "v100",       "atmos_4xdaily", "all", .false.,  "none", 2
 44 |  "dynamics",  "v50",         "v50",        "atmos_4xdaily", "all", .false.,  "none", 2
 45 |  "dynamics",  "v10",         "v10",        "atmos_4xdaily", "all", .false.,  "none", 2
 46 | ####
 47 |  "dynamics",  "tm",          "tm",         "atmos_4xdaily", "all", .false.,  "none", 2
 48 |  "dynamics",  "t1000",       "t1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 49 |  "dynamics",  "t850",        "t850",       "atmos_4xdaily", "all", .false.,  "none", 2
 50 |  "dynamics",  "t700",        "t700",       "atmos_4xdaily", "all", .false.,  "none", 2
 51 |  "dynamics",  "t500",        "t500",       "atmos_4xdaily", "all", .false.,  "none", 2
 52 |  "dynamics",  "t200",        "t200",       "atmos_4xdaily", "all", .false.,  "none", 2
 53 |  "dynamics",  "t100",        "t100",       "atmos_4xdaily", "all", .false.,  "none", 2
 54 |  "dynamics",  "t50",         "t50",        "atmos_4xdaily", "all", .false.,  "none", 2
 55 |  "dynamics",  "t10",         "t10",        "atmos_4xdaily", "all", .false.,  "none", 2
 56 | ####
 57 |  "dynamics",  "h1000",       "h1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 58 |  "dynamics",  "h850",        "h850",       "atmos_4xdaily", "all", .false.,  "none", 2
 59 |  "dynamics",  "h700",        "h700",       "atmos_4xdaily", "all", .false.,  "none", 2
 60 |  "dynamics",  "h500",        "h500",       "atmos_4xdaily", "all", .false.,  "none", 2
 61 |  "dynamics",  "h200",        "h200",       "atmos_4xdaily", "all", .false.,  "none", 2
 62 |  "dynamics",  "h100",        "h100",       "atmos_4xdaily", "all", .false.,  "none", 2
 63 |  "dynamics",  "h50",         "h50",        "atmos_4xdaily", "all", .false.,  "none", 2
 64 |  "dynamics",  "h10",         "h10",        "atmos_4xdaily", "all", .false.,  "none", 2
 65 | ####
 66 | #"dynamics",  "w1000",       "w1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 67 |  "dynamics",  "w850",        "w850",       "atmos_4xdaily", "all", .false.,  "none", 2
 68 |  "dynamics",  "w700",        "w700",       "atmos_4xdaily", "all", .false.,  "none", 2
 69 |  "dynamics",  "w500",        "w500",       "atmos_4xdaily", "all", .false.,  "none", 2
 70 |  "dynamics",  "w200",        "w200",       "atmos_4xdaily", "all", .false.,  "none", 2
 71 | ####
 72 |  "dynamics",  "q1000",       "q1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 73 |  "dynamics",  "q850",        "q850",       "atmos_4xdaily", "all", .false.,  "none", 2
 74 |  "dynamics",  "q700",        "q700",       "atmos_4xdaily", "all", .false.,  "none", 2
 75 |  "dynamics",  "q500",        "q500",       "atmos_4xdaily", "all", .false.,  "none", 2
 76 |  "dynamics",  "q200",        "q200",       "atmos_4xdaily", "all", .false.,  "none", 2
 77 |  "dynamics",  "q100",        "q100",       "atmos_4xdaily", "all", .false.,  "none", 2
 78 |  "dynamics",  "q50",         "q50",        "atmos_4xdaily", "all", .false.,  "none", 2
 79 |  "dynamics",  "q10",         "q10",        "atmos_4xdaily", "all", .false.,  "none", 2
 80 | ####
 81 |  "dynamics",  "rh1000",      "rh1000",     "atmos_4xdaily", "all", .false.,  "none", 2
 82 |  "dynamics",  "rh850",       "rh850",      "atmos_4xdaily", "all", .false.,  "none", 2
 83 |  "dynamics",  "rh700",       "rh700",      "atmos_4xdaily", "all", .false.,  "none", 2
 84 |  "dynamics",  "rh500",       "rh500",      "atmos_4xdaily", "all", .false.,  "none", 2
 85 |  "dynamics",  "rh200",       "rh200",      "atmos_4xdaily", "all", .false.,  "none", 2
 86 |  "dynamics",  "omg1000",     "omg1000",    "atmos_4xdaily", "all", .false.,  "none", 2
 87 |  "dynamics",  "omg850",      "omg850",     "atmos_4xdaily", "all", .false.,  "none", 2
 88 |  "dynamics",  "omg700",      "omg700",     "atmos_4xdaily", "all", .false.,  "none", 2
 89 |  "dynamics",  "omg500",      "omg500",     "atmos_4xdaily", "all", .false.,  "none", 2
 90 |  "dynamics",  "omg200",      "omg200",     "atmos_4xdaily", "all", .false.,  "none", 2
 91 |  "dynamics",  "omg100",      "omg100",     "atmos_4xdaily", "all", .false.,  "none", 2
 92 |  "dynamics",  "omg50",       "omg50",      "atmos_4xdaily", "all", .false.,  "none", 2
 93 |  "dynamics",  "omg10",       "omg10",      "atmos_4xdaily", "all", .false.,  "none", 2
 94 | ###
 95 | # gfs static data
 96 | ###
 97 |  "dynamics",      "pk",          "pk",           "atmos_static",      "all", .false.,  "none", 2
 98 |  "dynamics",      "bk",          "bk",           "atmos_static",      "all", .false.,  "none", 2
 99 |  "dynamics",      "hyam",        "hyam",         "atmos_static",      "all", .false.,  "none", 2
100 |  "dynamics",      "hybm",        "hybm",         "atmos_static",      "all", .false.,  "none", 2
101 |  "dynamics",      "zsurf",       "zsurf",        "atmos_static",      "all", .false.,  "none", 2
102 | ###
103 | # FV3 variabls needed for NGGPS evaluation
104 | ###
105 | "gfs_dyn",     "ucomp",       "ugrd",      "fv3_history",    "all",  .false.,  "none",  2
106 | "gfs_dyn",     "vcomp",       "vgrd",      "fv3_history",    "all",  .false.,  "none",  2
107 | "gfs_dyn",     "sphum",       "spfh",      "fv3_history",    "all",  .false.,  "none",  2
108 | "gfs_dyn",     "temp",        "tmp",       "fv3_history",    "all",  .false.,  "none",  2
109 | "gfs_dyn",     "liq_wat",     "clwmr",     "fv3_history",    "all",  .false.,  "none",  2
110 | "gfs_dyn",     "o3mr",        "o3mr",      "fv3_history",    "all",  .false.,  "none",  2
111 | "gfs_dyn",     "delp",        "dpres",     "fv3_history",    "all",  .false.,  "none",  2
112 | "gfs_dyn",     "delz",        "delz",      "fv3_history",    "all",  .false.,  "none",  2
113 | "gfs_dyn",     "w",           "dzdt",      "fv3_history",    "all",  .false.,  "none",  2
114 | "gfs_dyn",     "ice_wat",     "icmr",      "fv3_history",    "all",  .false.,  "none",  2
115 | "gfs_dyn",     "rainwat",     "rwmr",      "fv3_history",    "all",  .false.,  "none",  2
116 | "gfs_dyn",     "snowwat",     "snmr",      "fv3_history",    "all",  .false.,  "none",  2
117 | "gfs_dyn",     "graupel",     "grle",      "fv3_history",    "all",  .false.,  "none",  2
118 | "gfs_dyn",     "ps",          "pressfc",   "fv3_history",    "all",  .false.,  "none",  2
119 | "gfs_dyn",     "hs",          "hgtsfc",    "fv3_history",    "all",  .false.,  "none",  2
120 | #"gfs_dyn",     "ice_nc",      "nicp",      "fv3_history",  "all",  .false.,  "none",  2
121 | #"gfs_dyn",     "rain_nc",     "ntrnc",     "fv3_history",  "all",  .false.,  "none",  2
122 | 
123 | "gfs_phys",  "ALBDO_ave",     "albdo_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
124 | "gfs_phys",  "cnvprcp_ave",   "cprat_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
125 | "gfs_phys",  "cnvprcpb_ave",  "cpratb_ave",  "fv3_history2d",         "all",  .false.,  "none",  2
126 | "gfs_phys",  "totprcp_ave",   "prate_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
127 | "gfs_phys",  "totprcpb_ave",  "prateb_ave",  "fv3_history2d",         "all",  .false.,  "none",  2
128 | "gfs_phys",  "DLWRF",         "dlwrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
129 | "gfs_phys",  "DLWRFI",        "dlwrf",       "fv3_history2d",         "all",  .false.,  "none",  2
130 | "gfs_phys",  "ULWRF",         "ulwrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
131 | "gfs_phys",  "ULWRFI",        "ulwrf",       "fv3_history2d",         "all",  .false.,  "none",  2
132 | "gfs_phys",  "DSWRF",         "dswrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
133 | "gfs_phys",  "DSWRFI",        "dswrf",       "fv3_history2d",         "all",  .false.,  "none",  2
134 | "gfs_phys",  "USWRF",         "uswrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
135 | "gfs_phys",  "USWRFI",        "uswrf",       "fv3_history2d",         "all",  .false.,  "none",  2
136 | "gfs_phys",  "DSWRFtoa",      "dswrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
137 | "gfs_phys",  "USWRFtoa",      "uswrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
138 | "gfs_phys",  "ULWRFtoa",      "ulwrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
139 | "gfs_phys",  "gflux_ave",     "gflux_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
140 | "gfs_phys",  "hpbl",          "hpbl",        "fv3_history2d",         "all",  .false.,  "none",  2
141 | "gfs_phys",  "lhtfl_ave",     "lhtfl_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
142 | "gfs_phys",  "shtfl_ave",     "shtfl_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
143 | "gfs_phys",  "pwat",          "pwatclm",     "fv3_history2d",         "all",  .false.,  "none",  2
144 | "gfs_phys",  "soilm",         "soilm",       "fv3_history2d",         "all",  .false.,  "none",  2
145 | "gfs_phys",  "TCDC_aveclm",   "tcdc_aveclm", "fv3_history2d",         "all",  .false.,  "none",  2
146 | "gfs_phys",  "TCDC_avebndcl", "tcdc_avebndcl",  "fv3_history2d",         "all",  .false.,  "none",  2
147 | "gfs_phys",  "TCDC_avehcl",   "tcdc_avehcl", "fv3_history2d",         "all",  .false.,  "none",  2
148 | "gfs_phys",  "TCDC_avelcl",   "tcdc_avelcl", "fv3_history2d",         "all",  .false.,  "none",  2
149 | "gfs_phys",  "TCDC_avemcl",   "tcdc_avemcl", "fv3_history2d",         "all",  .false.,  "none",  2
150 | "gfs_phys",  "TCDCcnvcl",     "tcdccnvcl",   "fv3_history2d",         "all",  .false.,  "none",  2
151 | "gfs_phys",  "PREScnvclt",    "prescnvclt",  "fv3_history2d",         "all",  .false.,  "none",  2
152 | "gfs_phys",  "PREScnvclb",    "prescnvclb",  "fv3_history2d",         "all",  .false.,  "none",  2
153 | "gfs_phys",  "PRES_avehct",   "pres_avehct", "fv3_history2d",         "all",  .false.,  "none",  2
154 | "gfs_phys",  "PRES_avehcb",   "pres_avehcb", "fv3_history2d",         "all",  .false.,  "none",  2
155 | "gfs_phys",  "TEMP_avehct",   "tmp_avehct",  "fv3_history2d",         "all",  .false.,  "none",  2
156 | "gfs_phys",  "PRES_avemct",   "pres_avemct", "fv3_history2d",         "all",  .false.,  "none",  2
157 | "gfs_phys",  "PRES_avemcb",   "pres_avemcb", "fv3_history2d",         "all",  .false.,  "none",  2
158 | "gfs_phys",  "TEMP_avemct",   "tmp_avemct",  "fv3_history2d",         "all",  .false.,  "none",  2
159 | "gfs_phys",  "PRES_avelct",   "pres_avelct", "fv3_history2d",         "all",  .false.,  "none",  2
160 | "gfs_phys",  "PRES_avelcb",   "pres_avelcb", "fv3_history2d",         "all",  .false.,  "none",  2
161 | "gfs_phys",  "TEMP_avelct",   "tmp_avelct",  "fv3_history2d",         "all",  .false.,  "none",  2
162 | "gfs_phys",  "u-gwd_ave",     "u-gwd_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
163 | "gfs_phys",  "v-gwd_ave",     "v-gwd_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
164 | "gfs_phys",  "dusfc",         "uflx_ave",    "fv3_history2d",         "all",  .false.,  "none",  2
165 | "gfs_phys",  "dvsfc",         "vflx_ave",    "fv3_history2d",         "all",  .false.,  "none",  2
166 | #"gfs_phys",  "cnvw",          "cnvcldwat",   "fv3_history2d",         "all",  .false.,  "none",  2
167 | 
168 | "gfs_phys",    "psurf",       "pressfc",   "fv3_history2d",  "all",  .false.,  "none",  2
169 | "gfs_phys",    "u10m",        "ugrd10m",   "fv3_history2d",  "all",  .false.,  "none",  2
170 | "gfs_phys",    "v10m",        "vgrd10m",   "fv3_history2d",  "all",  .false.,  "none",  2
171 | "gfs_sfc",     "crain",       "crain",     "fv3_history2d",  "all",  .false.,  "none",  2
172 | "gfs_sfc",     "tprcp",       "tprcp",     "fv3_history2d",  "all",  .false.,  "none",  2
173 | "gfs_sfc",     "hgtsfc",      "orog",      "fv3_history2d",  "all",  .false.,  "none",  2
174 | "gfs_sfc",     "weasd",       "weasd",     "fv3_history2d",  "all",  .false.,  "none",  2
175 | "gfs_sfc",     "f10m",        "f10m",      "fv3_history2d",  "all",  .false.,  "none",  2
176 | "gfs_sfc",     "q2m",         "spfh2m",    "fv3_history2d",  "all",  .false.,  "none",  2
177 | "gfs_sfc",     "t2m",         "tmp2m",     "fv3_history2d",  "all",  .false.,  "none",  2
178 | "gfs_sfc",     "tsfc",        "tmpsfc",    "fv3_history2d",  "all",  .false.,  "none",  2
179 | "gfs_sfc",     "vtype",       "vtype",     "fv3_history2d",  "all",  .false.,  "none",  2
180 | "gfs_sfc",     "stype",       "sotyp",     "fv3_history2d",  "all",  .false.,  "none",  2
181 | "gfs_sfc",     "slmsksfc",    "land",      "fv3_history2d",  "all",  .false.,  "none",  2
182 | "gfs_sfc",     "vfracsfc",    "veg",       "fv3_history2d",  "all",  .false.,  "none",  2
183 | "gfs_sfc",     "zorlsfc",     "sfcr",      "fv3_history2d",  "all",  .false.,  "none",  2
184 | "gfs_sfc",     "uustar",      "fricv",     "fv3_history2d",  "all",  .false.,  "none",  2
185 | "gfs_sfc",     "soilt1",      "soilt1"     "fv3_history2d",  "all",  .false.,  "none",  2
186 | "gfs_sfc",     "soilt2",      "soilt2"     "fv3_history2d",  "all",  .false.,  "none",  2
187 | "gfs_sfc",     "soilt3",      "soilt3"     "fv3_history2d",  "all",  .false.,  "none",  2
188 | "gfs_sfc",     "soilt4",      "soilt4"     "fv3_history2d",  "all",  .false.,  "none",  2
189 | "gfs_sfc",     "soilw1",      "soilw1"     "fv3_history2d",  "all",  .false.,  "none",  2
190 | "gfs_sfc",     "soilw2",      "soilw2"     "fv3_history2d",  "all",  .false.,  "none",  2
191 | "gfs_sfc",     "soilw3",      "soilw3"     "fv3_history2d",  "all",  .false.,  "none",  2
192 | "gfs_sfc",     "soilw4",      "soilw4"     "fv3_history2d",  "all",  .false.,  "none",  2
193 | "gfs_sfc",     "slc_1",       "soill1",    "fv3_history2d",  "all",  .false.,  "none",  2
194 | "gfs_sfc",     "slc_2",       "soill2",    "fv3_history2d",  "all",  .false.,  "none",  2
195 | "gfs_sfc",     "slc_3",       "soill3",    "fv3_history2d",  "all",  .false.,  "none",  2
196 | "gfs_sfc",     "slc_4",       "soill4",    "fv3_history2d",  "all",  .false.,  "none",  2
197 | "gfs_sfc",     "slope",       "sltyp",     "fv3_history2d",  "all",  .false.,  "none",  2
198 | "gfs_sfc",     "alnsf",       "alnsf",     "fv3_history2d",  "all",  .false.,  "none",  2
199 | "gfs_sfc",     "alnwf",       "alnwf",     "fv3_history2d",  "all",  .false.,  "none",  2
200 | "gfs_sfc",     "alvsf",       "alvsf",     "fv3_history2d",  "all",  .false.,  "none",  2
201 | "gfs_sfc",     "alvwf",       "alvwf",     "fv3_history2d",  "all",  .false.,  "none",  2
202 | "gfs_sfc",     "canopy",      "cnwat",     "fv3_history2d",  "all",  .false.,  "none",  2
203 | "gfs_sfc",     "facsf",       "facsf",     "fv3_history2d",  "all",  .false.,  "none",  2
204 | "gfs_sfc",     "facwf",       "facwf",     "fv3_history2d",  "all",  .false.,  "none",  2
205 | "gfs_sfc",     "ffhh",        "ffhh",      "fv3_history2d",  "all",  .false.,  "none",  2
206 | "gfs_sfc",     "ffmm",        "ffmm",      "fv3_history2d",  "all",  .false.,  "none",  2
207 | "gfs_sfc",     "fice",        "icec",      "fv3_history2d",  "all",  .false.,  "none",  2
208 | "gfs_sfc",     "hice",        "icetk",     "fv3_history2d",  "all",  .false.,  "none",  2
209 | "gfs_sfc",     "snoalb",      "snoalb",    "fv3_history2d",  "all",  .false.,  "none",  2
210 | "gfs_sfc",     "shdmax",      "shdmax",    "fv3_history2d",  "all",  .false.,  "none",  2
211 | "gfs_sfc",     "shdmin",      "shdmin",    "fv3_history2d",  "all",  .false.,  "none",  2
212 | "gfs_sfc",     "snowd",       "snod",      "fv3_history2d",  "all",  .false.,  "none",  2
213 | "gfs_sfc",     "tg3",         "tg3",       "fv3_history2d",  "all",  .false.,  "none",  2
214 | "gfs_sfc",     "tisfc",       "tisfc",     "fv3_history2d",  "all",  .false.,  "none",  2
215 | "gfs_sfc",     "tref",        "tref",      "fv3_history2d",  "all",  .false.,  "none",  2
216 | "gfs_sfc",     "z_c",         "zc",        "fv3_history2d",  "all",  .false.,  "none",  2
217 | "gfs_sfc",     "c_0",         "c0",        "fv3_history2d",  "all",  .false.,  "none",  2
218 | "gfs_sfc",     "c_d",         "cd",        "fv3_history2d",  "all",  .false.,  "none",  2
219 | "gfs_sfc",     "w_0",         "w0",        "fv3_history2d",  "all",  .false.,  "none",  2
220 | "gfs_sfc",     "w_d",         "wd",        "fv3_history2d",  "all",  .false.,  "none",  2
221 | "gfs_sfc",     "xt",          "xt",        "fv3_history2d",  "all",  .false.,  "none",  2
222 | "gfs_sfc",     "xz",          "xz",        "fv3_history2d",  "all",  .false.,  "none",  2
223 | "gfs_sfc",     "dt_cool",     "dtcool",    "fv3_history2d",  "all",  .false.,  "none",  2
224 | "gfs_sfc",     "xs",          "xs",        "fv3_history2d",  "all",  .false.,  "none",  2
225 | "gfs_sfc",     "xu",          "xu",        "fv3_history2d",  "all",  .false.,  "none",  2
226 | "gfs_sfc",     "xv",          "xv",        "fv3_history2d",  "all",  .false.,  "none",  2
227 | "gfs_sfc",     "xtts",        "xtts",      "fv3_history2d",  "all",  .false.,  "none",  2
228 | "gfs_sfc",     "xzts",        "xzts",      "fv3_history2d",  "all",  .false.,  "none",  2
229 | "gfs_sfc",     "d_conv",      "dconv",     "fv3_history2d",  "all",  .false.,  "none",  2
230 | "gfs_sfc",     "qrain",       "qrain",     "fv3_history2d",  "all",  .false.,  "none",  2
231 | 
232 | "gfs_phys",    "acond",        "acond",         "fv3_history2d",  "all",  .false.,  "none",  2
233 | "gfs_phys",    "cduvb_ave",    "cduvb_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
234 | "gfs_phys",    "cpofp",        "cpofp",         "fv3_history2d",  "all",  .false.,  "none",  2
235 | "gfs_phys",    "duvb_ave",     "duvb_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
236 | "gfs_phys",    "csdlf_ave",    "csdlf",         "fv3_history2d",  "all",  .false.,  "none",  2
237 | "gfs_phys",    "csusf_ave",    "csusf",         "fv3_history2d",  "all",  .false.,  "none",  2
238 | "gfs_phys",    "csusf_avetoa", "csusftoa",      "fv3_history2d",  "all",  .false.,  "none",  2
239 | "gfs_phys",    "csdsf_ave",    "csdsf",         "fv3_history2d",  "all",  .false.,  "none",  2
240 | "gfs_phys",    "csulf_ave",    "csulf",         "fv3_history2d",  "all",  .false.,  "none",  2
241 | "gfs_phys",    "csulf_avetoa", "csulftoa",      "fv3_history2d",  "all",  .false.,  "none",  2
242 | "gfs_phys",    "cwork_ave",    "cwork_aveclm",  "fv3_history2d",  "all",  .false.,  "none",  2
243 | "gfs_phys",    "evbs_ave",     "evbs_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
244 | "gfs_phys",    "evcw_ave",     "evcw_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
245 | "gfs_phys",    "fldcp",        "fldcp",         "fv3_history2d",  "all",  .false.,  "none",  2
246 | "gfs_phys",    "hgt_hyblev1",  "hgt_hyblev1",   "fv3_history2d",  "all",  .false.,  "none",  2
247 | "gfs_phys",    "spfh_hyblev1", "spfh_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
248 | "gfs_phys",    "ugrd_hyblev1", "ugrd_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
249 | "gfs_phys",    "vgrd_hyblev1", "vgrd_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
250 | "gfs_phys",    "tmp_hyblev1",  "tmp_hyblev1",   "fv3_history2d",  "all",  .false.,  "none",  2
251 | "gfs_phys",    "gfluxi",       "gflux",         "fv3_history2d",  "all",  .false.,  "none",  2
252 | "gfs_phys",    "lhtfl",        "lhtfl",         "fv3_history2d",  "all",  .false.,  "none",  2
253 | "gfs_phys",    "shtfl",        "shtfl",         "fv3_history2d",  "all",  .false.,  "none",  2
254 | "gfs_phys",    "pevpr",        "pevpr",         "fv3_history2d",  "all",  .false.,  "none",  2
255 | "gfs_phys",    "pevpr_ave",    "pevpr_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
256 | "gfs_phys",    "sbsno_ave",    "sbsno_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
257 | "gfs_phys",    "sfexc",        "sfexc",         "fv3_history2d",  "all",  .false.,  "none",  2
258 | "gfs_phys",    "snohf",        "snohf",         "fv3_history2d",  "all",  .false.,  "none",  2
259 | "gfs_phys",    "snowc_ave",    "snowc_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
260 | "gfs_phys",    "spfhmax2m",    "spfhmax_max2m", "fv3_history2d",  "all",  .false.,  "none",  2
261 | "gfs_phys",    "spfhmin2m",    "spfhmin_min2m", "fv3_history2d",  "all",  .false.,  "none",  2
262 | "gfs_phys",    "tmpmax2m",     "tmax_max2m",    "fv3_history2d",  "all",  .false.,  "none",  2
263 | "gfs_phys",    "tmpmin2m",     "tmin_min2m",    "fv3_history2d",  "all",  .false.,  "none",  2
264 | "gfs_phys",    "ssrun_acc",    "ssrun_acc",     "fv3_history2d",  "all",  .false.,  "none",  2
265 | "gfs_phys",    "sunsd_acc",    "sunsd_acc",     "fv3_history2d",  "all",  .false.,  "none",  2
266 | "gfs_phys",    "watr_acc",     "watr_acc",      "fv3_history2d",  "all",  .false.,  "none",  2
267 | "gfs_phys",    "wilt",         "wilt",          "fv3_history2d",  "all",  .false.,  "none",  2
268 | "gfs_phys",    "vbdsf_ave",    "vbdsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
269 | "gfs_phys",    "vddsf_ave",    "vddsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
270 | "gfs_phys",    "nbdsf_ave",    "nbdsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
271 | "gfs_phys",    "nddsf_ave",    "nddsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
272 | "gfs_phys",    "trans_ave",    "trans_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
273 | 
274 | #=============================================================================================
275 | #
276 | #====> This file can be used with diag_manager/v2.0a (or higher) <====
277 | #
278 | #
279 | #  FORMATS FOR FILE ENTRIES (not all input values are used)
280 | #  ------------------------
281 | #
282 | #"file_name", output_freq, "output_units", format, "time_units", "long_name",
283 | #
284 | #
285 | #output_freq:  > 0  output frequency in "output_units"
286 | #              = 0  output frequency every time step
287 | #              =-1  output frequency at end of run
288 | #
289 | #output_units = units used for output frequency
290 | #               (years, months, days, minutes, hours, seconds)
291 | #
292 | #time_units   = units used to label the time axis
293 | #               (days, minutes, hours, seconds)
294 | #
295 | #
296 | #  FORMAT FOR FIELD ENTRIES (not all input values are used)
297 | #  ------------------------
298 | #
299 | #"module_name", "field_name", "output_name", "file_name" "time_sampling", time_avg, "other_opts", packing
300 | #
301 | #time_avg = .true. or .false.
302 | #
303 | #packing  = 1  double precision
304 | #         = 2  float
305 | #         = 4  packed 16-bit integers
306 | #         = 8  packed 1-byte (not tested?)
307 | 


--------------------------------------------------------------------------------
/cime_config/tables/diag_table_mrweather:
--------------------------------------------------------------------------------
  1 | 20161003.00Z.C96.64bit.non-mono
  2 | 2016 10 03 00 0 0
  3 | 
  4 | "grid_spec",              -1,  "months",   1, "days",  "time"
  5 | "atmos_4xdaily",           6,  "hours",    1, "days",  "time"
  6 | "atmos_static",           -1,  "hours",    1, "hours", "time"
  7 | "fv3_history",    0,  "hours",  1,  "hours",  "time"
  8 | "fv3_history2d",  0,  "hours",  1,  "hours",  "time"
  9 | 
 10 | #
 11 | #=======================
 12 | # ATMOSPHERE DIAGNOSTICS
 13 | #=======================
 14 | ###
 15 | # grid_spec
 16 | ###
 17 |  "dynamics", "grid_lon", "grid_lon", "grid_spec", "all", .false.,  "none", 2,
 18 |  "dynamics", "grid_lat", "grid_lat", "grid_spec", "all", .false.,  "none", 2,
 19 |  "dynamics", "grid_lont", "grid_lont", "grid_spec", "all", .false.,  "none", 2,
 20 |  "dynamics", "grid_latt", "grid_latt", "grid_spec", "all", .false.,  "none", 2,
 21 |  "dynamics", "area",     "area",     "grid_spec", "all", .false.,  "none", 2,
 22 | ###
 23 | # 4x daily output
 24 | ###
 25 |  "dynamics",  "slp",         "slp",        "atmos_4xdaily", "all", .false.,  "none", 2
 26 |  "dynamics",  "vort850",     "vort850",    "atmos_4xdaily", "all", .false.,  "none", 2
 27 |  "dynamics",  "vort200",     "vort200",    "atmos_4xdaily", "all", .false.,  "none", 2
 28 |  "dynamics",  "us",          "us",         "atmos_4xdaily", "all", .false.,  "none", 2
 29 |  "dynamics",  "u1000",       "u1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 30 |  "dynamics",  "u850",        "u850",       "atmos_4xdaily", "all", .false.,  "none", 2
 31 |  "dynamics",  "u700",        "u700",       "atmos_4xdaily", "all", .false.,  "none", 2
 32 |  "dynamics",  "u500",        "u500",       "atmos_4xdaily", "all", .false.,  "none", 2
 33 |  "dynamics",  "u200",        "u200",       "atmos_4xdaily", "all", .false.,  "none", 2
 34 |  "dynamics",  "u100",        "u100",       "atmos_4xdaily", "all", .false.,  "none", 2
 35 |  "dynamics",  "u50",         "u50",        "atmos_4xdaily", "all", .false.,  "none", 2
 36 |  "dynamics",  "u10",         "u10",        "atmos_4xdaily", "all", .false.,  "none", 2
 37 |  "dynamics",  "vs",          "vs",         "atmos_4xdaily", "all", .false.,  "none", 2
 38 |  "dynamics",  "v1000",       "v1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 39 |  "dynamics",  "v850",        "v850",       "atmos_4xdaily", "all", .false.,  "none", 2
 40 |  "dynamics",  "v700",        "v700",       "atmos_4xdaily", "all", .false.,  "none", 2
 41 |  "dynamics",  "v500",        "v500",       "atmos_4xdaily", "all", .false.,  "none", 2
 42 |  "dynamics",  "v200",        "v200",       "atmos_4xdaily", "all", .false.,  "none", 2
 43 |  "dynamics",  "v100",        "v100",       "atmos_4xdaily", "all", .false.,  "none", 2
 44 |  "dynamics",  "v50",         "v50",        "atmos_4xdaily", "all", .false.,  "none", 2
 45 |  "dynamics",  "v10",         "v10",        "atmos_4xdaily", "all", .false.,  "none", 2
 46 | ####
 47 |  "dynamics",  "tm",          "tm",         "atmos_4xdaily", "all", .false.,  "none", 2
 48 |  "dynamics",  "t1000",       "t1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 49 |  "dynamics",  "t850",        "t850",       "atmos_4xdaily", "all", .false.,  "none", 2
 50 |  "dynamics",  "t700",        "t700",       "atmos_4xdaily", "all", .false.,  "none", 2
 51 |  "dynamics",  "t500",        "t500",       "atmos_4xdaily", "all", .false.,  "none", 2
 52 |  "dynamics",  "t200",        "t200",       "atmos_4xdaily", "all", .false.,  "none", 2
 53 |  "dynamics",  "t100",        "t100",       "atmos_4xdaily", "all", .false.,  "none", 2
 54 |  "dynamics",  "t50",         "t50",        "atmos_4xdaily", "all", .false.,  "none", 2
 55 |  "dynamics",  "t10",         "t10",        "atmos_4xdaily", "all", .false.,  "none", 2
 56 | ####
 57 |  "dynamics",  "h1000",       "h1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 58 |  "dynamics",  "h850",        "h850",       "atmos_4xdaily", "all", .false.,  "none", 2
 59 |  "dynamics",  "h700",        "h700",       "atmos_4xdaily", "all", .false.,  "none", 2
 60 |  "dynamics",  "h500",        "h500",       "atmos_4xdaily", "all", .false.,  "none", 2
 61 |  "dynamics",  "h200",        "h200",       "atmos_4xdaily", "all", .false.,  "none", 2
 62 |  "dynamics",  "h100",        "h100",       "atmos_4xdaily", "all", .false.,  "none", 2
 63 |  "dynamics",  "h50",         "h50",        "atmos_4xdaily", "all", .false.,  "none", 2
 64 |  "dynamics",  "h10",         "h10",        "atmos_4xdaily", "all", .false.,  "none", 2
 65 | ####
 66 | #"dynamics",  "w1000",       "w1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 67 |  "dynamics",  "w850",        "w850",       "atmos_4xdaily", "all", .false.,  "none", 2
 68 |  "dynamics",  "w700",        "w700",       "atmos_4xdaily", "all", .false.,  "none", 2
 69 |  "dynamics",  "w500",        "w500",       "atmos_4xdaily", "all", .false.,  "none", 2
 70 |  "dynamics",  "w200",        "w200",       "atmos_4xdaily", "all", .false.,  "none", 2
 71 | ####
 72 |  "dynamics",  "q1000",       "q1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 73 |  "dynamics",  "q850",        "q850",       "atmos_4xdaily", "all", .false.,  "none", 2
 74 |  "dynamics",  "q700",        "q700",       "atmos_4xdaily", "all", .false.,  "none", 2
 75 |  "dynamics",  "q500",        "q500",       "atmos_4xdaily", "all", .false.,  "none", 2
 76 |  "dynamics",  "q200",        "q200",       "atmos_4xdaily", "all", .false.,  "none", 2
 77 |  "dynamics",  "q100",        "q100",       "atmos_4xdaily", "all", .false.,  "none", 2
 78 |  "dynamics",  "q50",         "q50",        "atmos_4xdaily", "all", .false.,  "none", 2
 79 |  "dynamics",  "q10",         "q10",        "atmos_4xdaily", "all", .false.,  "none", 2
 80 | ####
 81 |  "dynamics",  "rh1000",      "rh1000",     "atmos_4xdaily", "all", .false.,  "none", 2
 82 |  "dynamics",  "rh850",       "rh850",      "atmos_4xdaily", "all", .false.,  "none", 2
 83 |  "dynamics",  "rh700",       "rh700",      "atmos_4xdaily", "all", .false.,  "none", 2
 84 |  "dynamics",  "rh500",       "rh500",      "atmos_4xdaily", "all", .false.,  "none", 2
 85 |  "dynamics",  "rh200",       "rh200",      "atmos_4xdaily", "all", .false.,  "none", 2
 86 |  "dynamics",  "omg1000",     "omg1000",    "atmos_4xdaily", "all", .false.,  "none", 2
 87 |  "dynamics",  "omg850",      "omg850",     "atmos_4xdaily", "all", .false.,  "none", 2
 88 |  "dynamics",  "omg700",      "omg700",     "atmos_4xdaily", "all", .false.,  "none", 2
 89 |  "dynamics",  "omg500",      "omg500",     "atmos_4xdaily", "all", .false.,  "none", 2
 90 |  "dynamics",  "omg200",      "omg200",     "atmos_4xdaily", "all", .false.,  "none", 2
 91 |  "dynamics",  "omg100",      "omg100",     "atmos_4xdaily", "all", .false.,  "none", 2
 92 |  "dynamics",  "omg50",       "omg50",      "atmos_4xdaily", "all", .false.,  "none", 2
 93 |  "dynamics",  "omg10",       "omg10",      "atmos_4xdaily", "all", .false.,  "none", 2
 94 | ###
 95 | # gfs static data
 96 | ###
 97 |  "dynamics",      "pk",          "pk",           "atmos_static",      "all", .false.,  "none", 2
 98 |  "dynamics",      "bk",          "bk",           "atmos_static",      "all", .false.,  "none", 2
 99 |  "dynamics",      "hyam",        "hyam",         "atmos_static",      "all", .false.,  "none", 2
100 |  "dynamics",      "hybm",        "hybm",         "atmos_static",      "all", .false.,  "none", 2
101 |  "dynamics",      "zsurf",       "zsurf",        "atmos_static",      "all", .false.,  "none", 2
102 | ###
103 | # FV3 variabls needed for NGGPS evaluation
104 | ###
105 | "gfs_dyn",     "ucomp",       "ugrd",      "fv3_history",    "all",  .false.,  "none",  2
106 | "gfs_dyn",     "vcomp",       "vgrd",      "fv3_history",    "all",  .false.,  "none",  2
107 | "gfs_dyn",     "sphum",       "spfh",      "fv3_history",    "all",  .false.,  "none",  2
108 | "gfs_dyn",     "temp",        "tmp",       "fv3_history",    "all",  .false.,  "none",  2
109 | "gfs_dyn",     "liq_wat",     "clwmr",     "fv3_history",    "all",  .false.,  "none",  2
110 | "gfs_dyn",     "o3mr",        "o3mr",      "fv3_history",    "all",  .false.,  "none",  2
111 | "gfs_dyn",     "delp",        "dpres",     "fv3_history",    "all",  .false.,  "none",  2
112 | "gfs_dyn",     "delz",        "delz",      "fv3_history",    "all",  .false.,  "none",  2
113 | "gfs_dyn",     "w",           "dzdt",      "fv3_history",    "all",  .false.,  "none",  2
114 | "gfs_dyn",     "ice_wat",     "icmr",      "fv3_history",    "all",  .false.,  "none",  2
115 | "gfs_dyn",     "rainwat",     "rwmr",      "fv3_history",    "all",  .false.,  "none",  2
116 | "gfs_dyn",     "snowwat",     "snmr",      "fv3_history",    "all",  .false.,  "none",  2
117 | "gfs_dyn",     "graupel",     "grle",      "fv3_history",    "all",  .false.,  "none",  2
118 | "gfs_dyn",     "ps",          "pressfc",   "fv3_history",    "all",  .false.,  "none",  2
119 | "gfs_dyn",     "hs",          "hgtsfc",    "fv3_history",    "all",  .false.,  "none",  2
120 | #"gfs_dyn",     "ice_nc",      "nicp",      "fv3_history",  "all",  .false.,  "none",  2
121 | #"gfs_dyn",     "rain_nc",     "ntrnc",     "fv3_history",  "all",  .false.,  "none",  2
122 | 
123 | "gfs_phys",  "ALBDO_ave",     "albdo_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
124 | "gfs_phys",  "cnvprcp_ave",   "cprat_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
125 | "gfs_phys",  "cnvprcpb_ave",  "cpratb_ave",  "fv3_history2d",         "all",  .false.,  "none",  2
126 | "gfs_phys",  "totprcp_ave",   "prate_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
127 | "gfs_phys",  "totprcpb_ave",  "prateb_ave",  "fv3_history2d",         "all",  .false.,  "none",  2
128 | "gfs_phys",  "DLWRF",         "dlwrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
129 | "gfs_phys",  "DLWRFI",        "dlwrf",       "fv3_history2d",         "all",  .false.,  "none",  2
130 | "gfs_phys",  "ULWRF",         "ulwrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
131 | "gfs_phys",  "ULWRFI",        "ulwrf",       "fv3_history2d",         "all",  .false.,  "none",  2
132 | "gfs_phys",  "DSWRF",         "dswrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
133 | "gfs_phys",  "DSWRFI",        "dswrf",       "fv3_history2d",         "all",  .false.,  "none",  2
134 | "gfs_phys",  "USWRF",         "uswrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
135 | "gfs_phys",  "USWRFI",        "uswrf",       "fv3_history2d",         "all",  .false.,  "none",  2
136 | "gfs_phys",  "DSWRFtoa",      "dswrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
137 | "gfs_phys",  "USWRFtoa",      "uswrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
138 | "gfs_phys",  "ULWRFtoa",      "ulwrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
139 | "gfs_phys",  "gflux_ave",     "gflux_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
140 | "gfs_phys",  "hpbl",          "hpbl",        "fv3_history2d",         "all",  .false.,  "none",  2
141 | "gfs_phys",  "lhtfl_ave",     "lhtfl_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
142 | "gfs_phys",  "shtfl_ave",     "shtfl_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
143 | "gfs_phys",  "pwat",          "pwatclm",     "fv3_history2d",         "all",  .false.,  "none",  2
144 | "gfs_phys",  "soilm",         "soilm",       "fv3_history2d",         "all",  .false.,  "none",  2
145 | "gfs_phys",  "TCDC_aveclm",   "tcdc_aveclm", "fv3_history2d",         "all",  .false.,  "none",  2
146 | "gfs_phys",  "TCDC_avebndcl", "tcdc_avebndcl",  "fv3_history2d",         "all",  .false.,  "none",  2
147 | "gfs_phys",  "TCDC_avehcl",   "tcdc_avehcl", "fv3_history2d",         "all",  .false.,  "none",  2
148 | "gfs_phys",  "TCDC_avelcl",   "tcdc_avelcl", "fv3_history2d",         "all",  .false.,  "none",  2
149 | "gfs_phys",  "TCDC_avemcl",   "tcdc_avemcl", "fv3_history2d",         "all",  .false.,  "none",  2
150 | "gfs_phys",  "TCDCcnvcl",     "tcdccnvcl",   "fv3_history2d",         "all",  .false.,  "none",  2
151 | "gfs_phys",  "PREScnvclt",    "prescnvclt",  "fv3_history2d",         "all",  .false.,  "none",  2
152 | "gfs_phys",  "PREScnvclb",    "prescnvclb",  "fv3_history2d",         "all",  .false.,  "none",  2
153 | "gfs_phys",  "PRES_avehct",   "pres_avehct", "fv3_history2d",         "all",  .false.,  "none",  2
154 | "gfs_phys",  "PRES_avehcb",   "pres_avehcb", "fv3_history2d",         "all",  .false.,  "none",  2
155 | "gfs_phys",  "TEMP_avehct",   "tmp_avehct",  "fv3_history2d",         "all",  .false.,  "none",  2
156 | "gfs_phys",  "PRES_avemct",   "pres_avemct", "fv3_history2d",         "all",  .false.,  "none",  2
157 | "gfs_phys",  "PRES_avemcb",   "pres_avemcb", "fv3_history2d",         "all",  .false.,  "none",  2
158 | "gfs_phys",  "TEMP_avemct",   "tmp_avemct",  "fv3_history2d",         "all",  .false.,  "none",  2
159 | "gfs_phys",  "PRES_avelct",   "pres_avelct", "fv3_history2d",         "all",  .false.,  "none",  2
160 | "gfs_phys",  "PRES_avelcb",   "pres_avelcb", "fv3_history2d",         "all",  .false.,  "none",  2
161 | "gfs_phys",  "TEMP_avelct",   "tmp_avelct",  "fv3_history2d",         "all",  .false.,  "none",  2
162 | "gfs_phys",  "u-gwd_ave",     "u-gwd_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
163 | "gfs_phys",  "v-gwd_ave",     "v-gwd_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
164 | "gfs_phys",  "dusfc",         "uflx_ave",    "fv3_history2d",         "all",  .false.,  "none",  2
165 | "gfs_phys",  "dvsfc",         "vflx_ave",    "fv3_history2d",         "all",  .false.,  "none",  2
166 | #"gfs_phys",  "cnvw",          "cnvcldwat",   "fv3_history2d",         "all",  .false.,  "none",  2
167 | 
168 | "gfs_phys",    "psurf",       "pressfc",   "fv3_history2d",  "all",  .false.,  "none",  2
169 | "gfs_phys",    "u10m",        "ugrd10m",   "fv3_history2d",  "all",  .false.,  "none",  2
170 | "gfs_phys",    "v10m",        "vgrd10m",   "fv3_history2d",  "all",  .false.,  "none",  2
171 | "gfs_sfc",     "crain",       "crain",     "fv3_history2d",  "all",  .false.,  "none",  2
172 | "gfs_sfc",     "tprcp",       "tprcp",     "fv3_history2d",  "all",  .false.,  "none",  2
173 | "gfs_sfc",     "hgtsfc",      "orog",      "fv3_history2d",  "all",  .false.,  "none",  2
174 | "gfs_sfc",     "weasd",       "weasd",     "fv3_history2d",  "all",  .false.,  "none",  2
175 | "gfs_sfc",     "f10m",        "f10m",      "fv3_history2d",  "all",  .false.,  "none",  2
176 | "gfs_sfc",     "q2m",         "spfh2m",    "fv3_history2d",  "all",  .false.,  "none",  2
177 | "gfs_sfc",     "t2m",         "tmp2m",     "fv3_history2d",  "all",  .false.,  "none",  2
178 | "gfs_sfc",     "tsfc",        "tmpsfc",    "fv3_history2d",  "all",  .false.,  "none",  2
179 | "gfs_sfc",     "vtype",       "vtype",     "fv3_history2d",  "all",  .false.,  "none",  2
180 | "gfs_sfc",     "stype",       "sotyp",     "fv3_history2d",  "all",  .false.,  "none",  2
181 | "gfs_sfc",     "slmsksfc",    "land",      "fv3_history2d",  "all",  .false.,  "none",  2
182 | "gfs_sfc",     "vfracsfc",    "veg",       "fv3_history2d",  "all",  .false.,  "none",  2
183 | "gfs_sfc",     "zorlsfc",     "sfcr",      "fv3_history2d",  "all",  .false.,  "none",  2
184 | "gfs_sfc",     "uustar",      "fricv",     "fv3_history2d",  "all",  .false.,  "none",  2
185 | "gfs_sfc",     "soilt1",      "soilt1"     "fv3_history2d",  "all",  .false.,  "none",  2
186 | "gfs_sfc",     "soilt2",      "soilt2"     "fv3_history2d",  "all",  .false.,  "none",  2
187 | "gfs_sfc",     "soilt3",      "soilt3"     "fv3_history2d",  "all",  .false.,  "none",  2
188 | "gfs_sfc",     "soilt4",      "soilt4"     "fv3_history2d",  "all",  .false.,  "none",  2
189 | "gfs_sfc",     "soilw1",      "soilw1"     "fv3_history2d",  "all",  .false.,  "none",  2
190 | "gfs_sfc",     "soilw2",      "soilw2"     "fv3_history2d",  "all",  .false.,  "none",  2
191 | "gfs_sfc",     "soilw3",      "soilw3"     "fv3_history2d",  "all",  .false.,  "none",  2
192 | "gfs_sfc",     "soilw4",      "soilw4"     "fv3_history2d",  "all",  .false.,  "none",  2
193 | "gfs_sfc",     "slc_1",       "soill1",    "fv3_history2d",  "all",  .false.,  "none",  2
194 | "gfs_sfc",     "slc_2",       "soill2",    "fv3_history2d",  "all",  .false.,  "none",  2
195 | "gfs_sfc",     "slc_3",       "soill3",    "fv3_history2d",  "all",  .false.,  "none",  2
196 | "gfs_sfc",     "slc_4",       "soill4",    "fv3_history2d",  "all",  .false.,  "none",  2
197 | "gfs_sfc",     "slope",       "sltyp",     "fv3_history2d",  "all",  .false.,  "none",  2
198 | "gfs_sfc",     "alnsf",       "alnsf",     "fv3_history2d",  "all",  .false.,  "none",  2
199 | "gfs_sfc",     "alnwf",       "alnwf",     "fv3_history2d",  "all",  .false.,  "none",  2
200 | "gfs_sfc",     "alvsf",       "alvsf",     "fv3_history2d",  "all",  .false.,  "none",  2
201 | "gfs_sfc",     "alvwf",       "alvwf",     "fv3_history2d",  "all",  .false.,  "none",  2
202 | "gfs_sfc",     "canopy",      "cnwat",     "fv3_history2d",  "all",  .false.,  "none",  2
203 | "gfs_sfc",     "facsf",       "facsf",     "fv3_history2d",  "all",  .false.,  "none",  2
204 | "gfs_sfc",     "facwf",       "facwf",     "fv3_history2d",  "all",  .false.,  "none",  2
205 | "gfs_sfc",     "ffhh",        "ffhh",      "fv3_history2d",  "all",  .false.,  "none",  2
206 | "gfs_sfc",     "ffmm",        "ffmm",      "fv3_history2d",  "all",  .false.,  "none",  2
207 | "gfs_sfc",     "fice",        "icec",      "fv3_history2d",  "all",  .false.,  "none",  2
208 | "gfs_sfc",     "hice",        "icetk",     "fv3_history2d",  "all",  .false.,  "none",  2
209 | "gfs_sfc",     "snoalb",      "snoalb",    "fv3_history2d",  "all",  .false.,  "none",  2
210 | "gfs_sfc",     "shdmax",      "shdmax",    "fv3_history2d",  "all",  .false.,  "none",  2
211 | "gfs_sfc",     "shdmin",      "shdmin",    "fv3_history2d",  "all",  .false.,  "none",  2
212 | "gfs_sfc",     "snowd",       "snod",      "fv3_history2d",  "all",  .false.,  "none",  2
213 | "gfs_sfc",     "tg3",         "tg3",       "fv3_history2d",  "all",  .false.,  "none",  2
214 | "gfs_sfc",     "tisfc",       "tisfc",     "fv3_history2d",  "all",  .false.,  "none",  2
215 | "gfs_sfc",     "tref",        "tref",      "fv3_history2d",  "all",  .false.,  "none",  2
216 | "gfs_sfc",     "z_c",         "zc",        "fv3_history2d",  "all",  .false.,  "none",  2
217 | "gfs_sfc",     "c_0",         "c0",        "fv3_history2d",  "all",  .false.,  "none",  2
218 | "gfs_sfc",     "c_d",         "cd",        "fv3_history2d",  "all",  .false.,  "none",  2
219 | "gfs_sfc",     "w_0",         "w0",        "fv3_history2d",  "all",  .false.,  "none",  2
220 | "gfs_sfc",     "w_d",         "wd",        "fv3_history2d",  "all",  .false.,  "none",  2
221 | "gfs_sfc",     "xt",          "xt",        "fv3_history2d",  "all",  .false.,  "none",  2
222 | "gfs_sfc",     "xz",          "xz",        "fv3_history2d",  "all",  .false.,  "none",  2
223 | "gfs_sfc",     "dt_cool",     "dtcool",    "fv3_history2d",  "all",  .false.,  "none",  2
224 | "gfs_sfc",     "xs",          "xs",        "fv3_history2d",  "all",  .false.,  "none",  2
225 | "gfs_sfc",     "xu",          "xu",        "fv3_history2d",  "all",  .false.,  "none",  2
226 | "gfs_sfc",     "xv",          "xv",        "fv3_history2d",  "all",  .false.,  "none",  2
227 | "gfs_sfc",     "xtts",        "xtts",      "fv3_history2d",  "all",  .false.,  "none",  2
228 | "gfs_sfc",     "xzts",        "xzts",      "fv3_history2d",  "all",  .false.,  "none",  2
229 | "gfs_sfc",     "d_conv",      "dconv",     "fv3_history2d",  "all",  .false.,  "none",  2
230 | "gfs_sfc",     "qrain",       "qrain",     "fv3_history2d",  "all",  .false.,  "none",  2
231 | 
232 | "gfs_phys",    "acond",        "acond",         "fv3_history2d",  "all",  .false.,  "none",  2
233 | "gfs_phys",    "cduvb_ave",    "cduvb_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
234 | "gfs_phys",    "cpofp",        "cpofp",         "fv3_history2d",  "all",  .false.,  "none",  2
235 | "gfs_phys",    "duvb_ave",     "duvb_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
236 | "gfs_phys",    "csdlf_ave",    "csdlf",         "fv3_history2d",  "all",  .false.,  "none",  2
237 | "gfs_phys",    "csusf_ave",    "csusf",         "fv3_history2d",  "all",  .false.,  "none",  2
238 | "gfs_phys",    "csusf_avetoa", "csusftoa",      "fv3_history2d",  "all",  .false.,  "none",  2
239 | "gfs_phys",    "csdsf_ave",    "csdsf",         "fv3_history2d",  "all",  .false.,  "none",  2
240 | "gfs_phys",    "csulf_ave",    "csulf",         "fv3_history2d",  "all",  .false.,  "none",  2
241 | "gfs_phys",    "csulf_avetoa", "csulftoa",      "fv3_history2d",  "all",  .false.,  "none",  2
242 | "gfs_phys",    "cwork_ave",    "cwork_aveclm",  "fv3_history2d",  "all",  .false.,  "none",  2
243 | "gfs_phys",    "evbs_ave",     "evbs_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
244 | "gfs_phys",    "evcw_ave",     "evcw_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
245 | "gfs_phys",    "fldcp",        "fldcp",         "fv3_history2d",  "all",  .false.,  "none",  2
246 | "gfs_phys",    "hgt_hyblev1",  "hgt_hyblev1",   "fv3_history2d",  "all",  .false.,  "none",  2
247 | "gfs_phys",    "spfh_hyblev1", "spfh_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
248 | "gfs_phys",    "ugrd_hyblev1", "ugrd_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
249 | "gfs_phys",    "vgrd_hyblev1", "vgrd_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
250 | "gfs_phys",    "tmp_hyblev1",  "tmp_hyblev1",   "fv3_history2d",  "all",  .false.,  "none",  2
251 | "gfs_phys",    "gfluxi",       "gflux",         "fv3_history2d",  "all",  .false.,  "none",  2
252 | "gfs_phys",    "lhtfl",        "lhtfl",         "fv3_history2d",  "all",  .false.,  "none",  2
253 | "gfs_phys",    "shtfl",        "shtfl",         "fv3_history2d",  "all",  .false.,  "none",  2
254 | "gfs_phys",    "pevpr",        "pevpr",         "fv3_history2d",  "all",  .false.,  "none",  2
255 | "gfs_phys",    "pevpr_ave",    "pevpr_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
256 | "gfs_phys",    "sbsno_ave",    "sbsno_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
257 | "gfs_phys",    "sfexc",        "sfexc",         "fv3_history2d",  "all",  .false.,  "none",  2
258 | "gfs_phys",    "snohf",        "snohf",         "fv3_history2d",  "all",  .false.,  "none",  2
259 | "gfs_phys",    "snowc_ave",    "snowc_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
260 | "gfs_phys",    "spfhmax2m",    "spfhmax_max2m", "fv3_history2d",  "all",  .false.,  "none",  2
261 | "gfs_phys",    "spfhmin2m",    "spfhmin_min2m", "fv3_history2d",  "all",  .false.,  "none",  2
262 | "gfs_phys",    "tmpmax2m",     "tmax_max2m",    "fv3_history2d",  "all",  .false.,  "none",  2
263 | "gfs_phys",    "tmpmin2m",     "tmin_min2m",    "fv3_history2d",  "all",  .false.,  "none",  2
264 | "gfs_phys",    "ssrun_acc",    "ssrun_acc",     "fv3_history2d",  "all",  .false.,  "none",  2
265 | "gfs_phys",    "sunsd_acc",    "sunsd_acc",     "fv3_history2d",  "all",  .false.,  "none",  2
266 | "gfs_phys",    "watr_acc",     "watr_acc",      "fv3_history2d",  "all",  .false.,  "none",  2
267 | "gfs_phys",    "wilt",         "wilt",          "fv3_history2d",  "all",  .false.,  "none",  2
268 | "gfs_phys",    "vbdsf_ave",    "vbdsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
269 | "gfs_phys",    "vddsf_ave",    "vddsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
270 | "gfs_phys",    "nbdsf_ave",    "nbdsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
271 | "gfs_phys",    "nddsf_ave",    "nddsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
272 | "gfs_phys",    "trans_ave",    "trans_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
273 | 
274 | #=============================================================================================
275 | #
276 | #====> This file can be used with diag_manager/v2.0a (or higher) <====
277 | #
278 | #
279 | #  FORMATS FOR FILE ENTRIES (not all input values are used)
280 | #  ------------------------
281 | #
282 | #"file_name", output_freq, "output_units", format, "time_units", "long_name",
283 | #
284 | #
285 | #output_freq:  > 0  output frequency in "output_units"
286 | #              = 0  output frequency every time step
287 | #              =-1  output frequency at end of run
288 | #
289 | #output_units = units used for output frequency
290 | #               (years, months, days, minutes, hours, seconds)
291 | #
292 | #time_units   = units used to label the time axis
293 | #               (days, minutes, hours, seconds)
294 | #
295 | #
296 | #  FORMAT FOR FIELD ENTRIES (not all input values are used)
297 | #  ------------------------
298 | #
299 | #"module_name", "field_name", "output_name", "file_name" "time_sampling", time_avg, "other_opts", packing
300 | #
301 | #time_avg = .true. or .false.
302 | #
303 | #packing  = 1  double precision
304 | #         = 2  float
305 | #         = 4  packed 16-bit integers
306 | #         = 8  packed 1-byte (not tested?)
307 | 


--------------------------------------------------------------------------------
/cime_config/tables/diag_table_hafs:
--------------------------------------------------------------------------------
  1 | 20190901.18Z.C768.32bit.non-hydro
  2 | 2019 09 01 18 0 0
  3 | #output files
  4 | "grid_spec",     -1,  "months",  1,  "days",   "time"
  5 | #"atmos_4xdaily",  1,  "hours",   1,  "days",   "time"
  6 | "atmos_static",  -1,  "hours",   1,  "hours",  "time"
  7 | "fv3_history",    0,  "hours",   1,  "hours",  "time"
  8 | "fv3_history2d",  0,  "hours",   1,  "hours",  "time"
  9 | #"ref3D",          0,  "hours",   1,  "hours",  "time"
 10 | #"maxmin2D",       1,  "hours",   1,  "hours",  "time"
 11 | 
 12 | #
 13 | #=======================
 14 | # ATMOSPHERE DIAGNOSTICS
 15 | #=======================
 16 | ###
 17 | # grid_spec
 18 | ###
 19 |  "dynamics", "grid_lon", "grid_lon", "grid_spec", "all", .false.,  "none", 2,
 20 |  "dynamics", "grid_lat", "grid_lat", "grid_spec", "all", .false.,  "none", 2,
 21 |  "dynamics", "grid_lont", "grid_lont", "grid_spec", "all", .false.,  "none", 2,
 22 |  "dynamics", "grid_latt", "grid_latt", "grid_spec", "all", .false.,  "none", 2,
 23 |  "dynamics", "area",     "area",     "grid_spec", "all", .false.,  "none", 2,
 24 | ###
 25 | # 4x daily output
 26 | ###
 27 | # "dynamics",  "slp",         "slp",        "atmos_4xdaily", "all", .false.,  "none", 2
 28 | # "dynamics",  "vort850",     "vort850",    "atmos_4xdaily", "all", .false.,  "none", 2
 29 | # "dynamics",  "vort500",     "vort500",    "atmos_4xdaily", "all", .false.,  "none", 2
 30 | # "dynamics",  "vort200",     "vort200",    "atmos_4xdaily", "all", .false.,  "none", 2
 31 | # "dynamics",  "us",          "us",         "atmos_4xdaily", "all", .false.,  "none", 2
 32 | # "dynamics",  "u1000",       "u1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 33 | # "dynamics",  "u850",        "u850",       "atmos_4xdaily", "all", .false.,  "none", 2
 34 | # "dynamics",  "u700",        "u700",       "atmos_4xdaily", "all", .false.,  "none", 2
 35 | # "dynamics",  "u500",        "u500",       "atmos_4xdaily", "all", .false.,  "none", 2
 36 | # "dynamics",  "u200",        "u200",       "atmos_4xdaily", "all", .false.,  "none", 2
 37 | # "dynamics",  "u100",        "u100",       "atmos_4xdaily", "all", .false.,  "none", 2
 38 | # "dynamics",  "u50",         "u50",        "atmos_4xdaily", "all", .false.,  "none", 2
 39 | # "dynamics",  "u10",         "u10",        "atmos_4xdaily", "all", .false.,  "none", 2
 40 | # "dynamics",  "vs",          "vs",         "atmos_4xdaily", "all", .false.,  "none", 2
 41 | # "dynamics",  "v1000",       "v1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 42 | # "dynamics",  "v850",        "v850",       "atmos_4xdaily", "all", .false.,  "none", 2
 43 | # "dynamics",  "v700",        "v700",       "atmos_4xdaily", "all", .false.,  "none", 2
 44 | # "dynamics",  "v500",        "v500",       "atmos_4xdaily", "all", .false.,  "none", 2
 45 | # "dynamics",  "v200",        "v200",       "atmos_4xdaily", "all", .false.,  "none", 2
 46 | # "dynamics",  "v100",        "v100",       "atmos_4xdaily", "all", .false.,  "none", 2
 47 | # "dynamics",  "v50",         "v50",        "atmos_4xdaily", "all", .false.,  "none", 2
 48 | # "dynamics",  "v10",         "v10",        "atmos_4xdaily", "all", .false.,  "none", 2
 49 | ####
 50 | # "dynamics",  "tm",          "tm",         "atmos_4xdaily", "all", .false.,  "none", 2
 51 | # "dynamics",  "t1000",       "t1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 52 | # "dynamics",  "t850",        "t850",       "atmos_4xdaily", "all", .false.,  "none", 2
 53 | # "dynamics",  "t700",        "t700",       "atmos_4xdaily", "all", .false.,  "none", 2
 54 | # "dynamics",  "t500",        "t500",       "atmos_4xdaily", "all", .false.,  "none", 2
 55 | # "dynamics",  "t200",        "t200",       "atmos_4xdaily", "all", .false.,  "none", 2
 56 | # "dynamics",  "t100",        "t100",       "atmos_4xdaily", "all", .false.,  "none", 2
 57 | # "dynamics",  "t50",         "t50",        "atmos_4xdaily", "all", .false.,  "none", 2
 58 | # "dynamics",  "t10",         "t10",        "atmos_4xdaily", "all", .false.,  "none", 2
 59 | ####
 60 | # "dynamics",  "z1000",       "z1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 61 | # "dynamics",  "z850",        "z850",       "atmos_4xdaily", "all", .false.,  "none", 2
 62 | # "dynamics",  "z700",        "z700",       "atmos_4xdaily", "all", .false.,  "none", 2
 63 | # "dynamics",  "z500",        "z500",       "atmos_4xdaily", "all", .false.,  "none", 2
 64 | # "dynamics",  "z200",        "z200",       "atmos_4xdaily", "all", .false.,  "none", 2
 65 | # "dynamics",  "z100",        "z100",       "atmos_4xdaily", "all", .false.,  "none", 2
 66 | # "dynamics",  "z50",         "z50",        "atmos_4xdaily", "all", .false.,  "none", 2
 67 | # "dynamics",  "z10",         "z10",        "atmos_4xdaily", "all", .false.,  "none", 2
 68 | ####
 69 | #"dynamics",  "w1000",       "w1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 70 | # "dynamics",  "w850",        "w850",       "atmos_4xdaily", "all", .false.,  "none", 2
 71 | # "dynamics",  "w700",        "w700",       "atmos_4xdaily", "all", .false.,  "none", 2
 72 | # "dynamics",  "w500",        "w500",       "atmos_4xdaily", "all", .false.,  "none", 2
 73 | # "dynamics",  "w200",        "w200",       "atmos_4xdaily", "all", .false.,  "none", 2
 74 | ####
 75 | # "dynamics",  "q1000",       "q1000",      "atmos_4xdaily", "all", .false.,  "none", 2
 76 | # "dynamics",  "q850",        "q850",       "atmos_4xdaily", "all", .false.,  "none", 2
 77 | # "dynamics",  "q700",        "q700",       "atmos_4xdaily", "all", .false.,  "none", 2
 78 | # "dynamics",  "q500",        "q500",       "atmos_4xdaily", "all", .false.,  "none", 2
 79 | # "dynamics",  "q200",        "q200",       "atmos_4xdaily", "all", .false.,  "none", 2
 80 | # "dynamics",  "q100",        "q100",       "atmos_4xdaily", "all", .false.,  "none", 2
 81 | # "dynamics",  "q50",         "q50",        "atmos_4xdaily", "all", .false.,  "none", 2
 82 | # "dynamics",  "q10",         "q10",        "atmos_4xdaily", "all", .false.,  "none", 2
 83 | ####
 84 | # "dynamics",  "rh1000",      "rh1000",     "atmos_4xdaily", "all", .false.,  "none", 2
 85 | # "dynamics",  "rh850",       "rh850",      "atmos_4xdaily", "all", .false.,  "none", 2
 86 | # "dynamics",  "rh700",       "rh700",      "atmos_4xdaily", "all", .false.,  "none", 2
 87 | # "dynamics",  "rh500",       "rh500",      "atmos_4xdaily", "all", .false.,  "none", 2
 88 | # "dynamics",  "rh200",       "rh200",      "atmos_4xdaily", "all", .false.,  "none", 2
 89 | # "dynamics",  "omg1000",     "omg1000",    "atmos_4xdaily", "all", .false.,  "none", 2
 90 | # "dynamics",  "omg850",      "omg850",     "atmos_4xdaily", "all", .false.,  "none", 2
 91 | # "dynamics",  "omg700",      "omg700",     "atmos_4xdaily", "all", .false.,  "none", 2
 92 | # "dynamics",  "omg500",      "omg500",     "atmos_4xdaily", "all", .false.,  "none", 2
 93 | # "dynamics",  "omg200",      "omg200",     "atmos_4xdaily", "all", .false.,  "none", 2
 94 | # "dynamics",  "omg100",      "omg100",     "atmos_4xdaily", "all", .false.,  "none", 2
 95 | # "dynamics",  "omg50",       "omg50",      "atmos_4xdaily", "all", .false.,  "none", 2
 96 | # "dynamics",  "omg10",       "omg10",      "atmos_4xdaily", "all", .false.,  "none", 2
 97 | ####
 98 | # "dynamics",  "cape",        "sbcape",     "atmos_4xdaily", "all", .false.,  "none", 2
 99 | # "dynamics",  "cin",         "sbcin",      "atmos_4xdaily", "all", .false.,  "none", 2
100 | ###
101 | # gfs static data
102 | ###
103 |  "dynamics",      "pk",          "pk",           "atmos_static",      "all", .false.,  "none", 2
104 |  "dynamics",      "bk",          "bk",           "atmos_static",      "all", .false.,  "none", 2
105 |  "dynamics",      "hyam",        "hyam",         "atmos_static",      "all", .false.,  "none", 2
106 |  "dynamics",      "hybm",        "hybm",         "atmos_static",      "all", .false.,  "none", 2
107 |  "dynamics",      "zsurf",       "zsurf",        "atmos_static",      "all", .false.,  "none", 2
108 | ###
109 | # FV3 variabls needed for NGGPS evaluation
110 | ###
111 | "gfs_dyn",     "ucomp",       "ugrd",      "fv3_history",    "all",  .false.,  "none",  2
112 | "gfs_dyn",     "vcomp",       "vgrd",      "fv3_history",    "all",  .false.,  "none",  2
113 | "gfs_dyn",     "sphum",       "spfh",      "fv3_history",    "all",  .false.,  "none",  2
114 | "gfs_dyn",     "temp",        "tmp",       "fv3_history",    "all",  .false.,  "none",  2
115 | "gfs_dyn",     "liq_wat",     "clwmr",     "fv3_history",    "all",  .false.,  "none",  2
116 | "gfs_dyn",     "o3mr",        "o3mr",      "fv3_history",    "all",  .false.,  "none",  2
117 | "gfs_dyn",     "delp",        "dpres",     "fv3_history",    "all",  .false.,  "none",  2
118 | "gfs_dyn",     "delz",        "delz",      "fv3_history",    "all",  .false.,  "none",  2
119 | "gfs_dyn",     "w",           "dzdt",      "fv3_history",    "all",  .false.,  "none",  2
120 | "gfs_dyn",     "ice_wat",     "icmr",      "fv3_history",    "all",  .false.,  "none",  2
121 | "gfs_dyn",     "rainwat",     "rwmr",      "fv3_history",    "all",  .false.,  "none",  2
122 | "gfs_dyn",     "snowwat",     "snmr",      "fv3_history",    "all",  .false.,  "none",  2
123 | "gfs_dyn",     "graupel",     "grle",      "fv3_history",    "all",  .false.,  "none",  2
124 | "gfs_dyn",     "ps",          "pressfc",   "fv3_history",    "all",  .false.,  "none",  2
125 | "gfs_dyn",     "hs",          "hgtsfc",    "fv3_history",    "all",  .false.,  "none",  2
126 | "gfs_dyn",     "cld_amt",     "cld_amt",   "fv3_history",    "all",  .false.,  "none",  2
127 | #"gfs_dyn",     "ice_nc",      "nicp",      "fv3_history",  "all",  .false.,  "none",  2
128 | #"gfs_dyn",     "rain_nc",     "ntrnc",     "fv3_history",  "all",  .false.,  "none",  2
129 | 
130 | ###
131 | # Max hourly fields
132 | ###
133 | "gfs_dyn",   "wmaxup",      "upvvelmax",    "fv3_history",    "all",  .false.,  "none",  2
134 | "gfs_dyn",   "wmaxdn",      "dnvvelmax",    "fv3_history",    "all",  .false.,  "none",  2
135 | "gfs_dyn",   "uhmax03",     "uhmax03",      "fv3_history",    "all",  .false.,  "none",  2
136 | "gfs_dyn",   "uhmax25",     "uhmax25",      "fv3_history",    "all",  .false.,  "none",  2
137 | "gfs_dyn",   "uhmin03",     "uhmin03",      "fv3_history",    "all",  .false.,  "none",  2
138 | "gfs_dyn",   "uhmin25",     "uhmin25",      "fv3_history",    "all",  .false.,  "none",  2
139 | "gfs_dyn",   "maxvort01",   "maxvort01",    "fv3_history",    "all",  .false.,  "none",  2
140 | "gfs_dyn",   "maxvort02",   "maxvort02",    "fv3_history",    "all",  .false.,  "none",  2
141 | "gfs_dyn",   "maxvorthy1",  "maxvorthy1",   "fv3_history",    "all",  .false.,  "none",  2
142 | "gfs_dyn",   "ustm",        "ustm",         "fv3_history",    "all",  .false.,  "none",  2
143 | "gfs_dyn",   "vstm",        "vstm",         "fv3_history",    "all",  .false.,  "none",  2
144 | "gfs_dyn",   "srh01",       "srh01",        "fv3_history",    "all",  .false.,  "none",  2
145 | "gfs_dyn",   "srh03",       "srh03",        "fv3_history",    "all",  .false.,  "none",  2
146 | 
147 | "gfs_phys",  "u10max",       "u10max",       "fv3_history2d",  "all",  .false.,  "none",  2
148 | "gfs_phys",  "v10max",       "v10max",       "fv3_history2d",  "all",  .false.,  "none",  2
149 | "gfs_phys",  "spd10max",     "spd10max",     "fv3_history2d",  "all",  .false.,  "none",  2
150 | "gfs_phys",  "refdmax",      "refdmax",      "fv3_history2d",  "all",  .false.,  "none",  2
151 | "gfs_phys",  "refdmax263k",  "refdmax263k",  "fv3_history2d",  "all",  .false.,  "none",  2
152 | "gfs_phys",  "t02max",       "t02max",       "fv3_history2d",  "all",  .false.,  "none",  2
153 | "gfs_phys",  "t02min",       "t02min",       "fv3_history2d",  "all",  .false.,  "none",  2
154 | "gfs_phys",  "rh02max",      "rh02max",      "fv3_history2d",  "all",  .false.,  "none",  2
155 | "gfs_phys",  "rh02min",      "rh02min",      "fv3_history2d",  "all",  .false.,  "none",  2
156 | 
157 | 
158 | "gfs_phys",  "ALBDO_ave",     "albdo_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
159 | "gfs_phys",  "cnvprcp_ave",   "cprat_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
160 | "gfs_phys",  "cnvprcpb_ave",  "cpratb_ave",  "fv3_history2d",         "all",  .false.,  "none",  2
161 | "gfs_phys",  "totprcp_ave",   "prate_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
162 | "gfs_phys",  "totprcpb_ave",  "prateb_ave",  "fv3_history2d",         "all",  .false.,  "none",  2
163 | "gfs_phys",  "DLWRF",         "dlwrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
164 | "gfs_phys",  "DLWRFI",        "dlwrf",       "fv3_history2d",         "all",  .false.,  "none",  2
165 | "gfs_phys",  "ULWRF",         "ulwrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
166 | "gfs_phys",  "ULWRFI",        "ulwrf",       "fv3_history2d",         "all",  .false.,  "none",  2
167 | "gfs_phys",  "DSWRF",         "dswrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
168 | "gfs_phys",  "DSWRFI",        "dswrf",       "fv3_history2d",         "all",  .false.,  "none",  2
169 | "gfs_phys",  "USWRF",         "uswrf_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
170 | "gfs_phys",  "USWRFI",        "uswrf",       "fv3_history2d",         "all",  .false.,  "none",  2
171 | "gfs_phys",  "DSWRFtoa",      "dswrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
172 | "gfs_phys",  "USWRFtoa",      "uswrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
173 | "gfs_phys",  "ULWRFtoa",      "ulwrf_avetoa","fv3_history2d",         "all",  .false.,  "none",  2
174 | "gfs_phys",  "gflux_ave",     "gflux_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
175 | "gfs_phys",  "hpbl",          "hpbl",        "fv3_history2d",         "all",  .false.,  "none",  2
176 | "gfs_phys",  "lhtfl_ave",     "lhtfl_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
177 | "gfs_phys",  "shtfl_ave",     "shtfl_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
178 | "gfs_phys",  "pwat",          "pwatclm",     "fv3_history2d",         "all",  .false.,  "none",  2
179 | "gfs_phys",  "soilm",         "soilm",       "fv3_history2d",         "all",  .false.,  "none",  2
180 | "gfs_phys",  "TCDC_aveclm",   "tcdc_aveclm", "fv3_history2d",         "all",  .false.,  "none",  2
181 | "gfs_phys",  "TCDC_avebndcl", "tcdc_avebndcl",  "fv3_history2d",         "all",  .false.,  "none",  2
182 | "gfs_phys",  "TCDC_avehcl",   "tcdc_avehcl", "fv3_history2d",         "all",  .false.,  "none",  2
183 | "gfs_phys",  "TCDC_avelcl",   "tcdc_avelcl", "fv3_history2d",         "all",  .false.,  "none",  2
184 | "gfs_phys",  "TCDC_avemcl",   "tcdc_avemcl", "fv3_history2d",         "all",  .false.,  "none",  2
185 | "gfs_phys",  "TCDCcnvcl",     "tcdccnvcl",   "fv3_history2d",         "all",  .false.,  "none",  2
186 | "gfs_phys",  "PREScnvclt",     "prescnvclt", "fv3_history2d",         "all",  .false.,  "none",  2
187 | "gfs_phys",  "PREScnvclb",     "prescnvclb", "fv3_history2d",         "all",  .false.,  "none",  2
188 | "gfs_phys",  "PRES_avehct",   "pres_avehct", "fv3_history2d",         "all",  .false.,  "none",  2
189 | "gfs_phys",  "PRES_avehcb",   "pres_avehcb", "fv3_history2d",         "all",  .false.,  "none",  2
190 | "gfs_phys",  "TEMP_avehct",   "tmp_avehct",  "fv3_history2d",         "all",  .false.,  "none",  2
191 | "gfs_phys",  "PRES_avemct",   "pres_avemct", "fv3_history2d",         "all",  .false.,  "none",  2
192 | "gfs_phys",  "PRES_avemcb",   "pres_avemcb", "fv3_history2d",         "all",  .false.,  "none",  2
193 | "gfs_phys",  "TEMP_avemct",   "tmp_avemct",  "fv3_history2d",         "all",  .false.,  "none",  2
194 | "gfs_phys",  "PRES_avelct",   "pres_avelct", "fv3_history2d",         "all",  .false.,  "none",  2
195 | "gfs_phys",  "PRES_avelcb",   "pres_avelcb", "fv3_history2d",         "all",  .false.,  "none",  2
196 | "gfs_phys",  "TEMP_avelct",   "tmp_avelct",  "fv3_history2d",         "all",  .false.,  "none",  2
197 | "gfs_phys",  "u-gwd_ave",     "u-gwd_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
198 | "gfs_phys",  "v-gwd_ave",     "v-gwd_ave",   "fv3_history2d",         "all",  .false.,  "none",  2
199 | "gfs_phys",  "dusfc",         "uflx_ave",    "fv3_history2d",         "all",  .false.,  "none",  2
200 | "gfs_phys",  "dvsfc",         "vflx_ave",    "fv3_history2d",         "all",  .false.,  "none",  2
201 | 
202 | "gfs_phys",    "psurf",       "pressfc",   "fv3_history2d",  "all",  .false.,  "none",  2
203 | "gfs_phys",    "u10m",        "ugrd10m",   "fv3_history2d",  "all",  .false.,  "none",  2
204 | "gfs_phys",    "v10m",        "vgrd10m",   "fv3_history2d",  "all",  .false.,  "none",  2
205 | "gfs_phys",    "crain",       "crain",     "fv3_history2d",  "all",  .false.,  "none",  2
206 | "gfs_sfc",     "tprcp",       "tprcp",     "fv3_history2d",  "all",  .false.,  "none",  2
207 | "gfs_sfc",     "hgtsfc",      "orog",      "fv3_history2d",  "all",  .false.,  "none",  2
208 | "gfs_sfc",     "weasd",       "weasd",     "fv3_history2d",  "all",  .false.,  "none",  2
209 | "gfs_sfc",     "f10m",        "f10m",      "fv3_history2d",  "all",  .false.,  "none",  2
210 | "gfs_sfc",     "q2m",         "spfh2m",    "fv3_history2d",  "all",  .false.,  "none",  2
211 | "gfs_sfc",     "t2m",         "tmp2m",     "fv3_history2d",  "all",  .false.,  "none",  2
212 | "gfs_sfc",     "tsfc",        "tmpsfc",    "fv3_history2d",  "all",  .false.,  "none",  2
213 | "gfs_sfc",     "vtype",       "vtype",     "fv3_history2d",  "all",  .false.,  "none",  2
214 | "gfs_sfc",     "stype",       "sotyp",     "fv3_history2d",  "all",  .false.,  "none",  2
215 | "gfs_sfc",     "slmsksfc",    "land",      "fv3_history2d",  "all",  .false.,  "none",  2
216 | "gfs_sfc",     "vfracsfc",    "veg",       "fv3_history2d",  "all",  .false.,  "none",  2
217 | "gfs_sfc",     "zorlsfc",     "sfcr",      "fv3_history2d",  "all",  .false.,  "none",  2
218 | "gfs_sfc",     "uustar",      "fricv",     "fv3_history2d",  "all",  .false.,  "none",  2
219 | "gfs_sfc",     "soilt1",      "soilt1"     "fv3_history2d",  "all",  .false.,  "none",  2
220 | "gfs_sfc",     "soilt2",      "soilt2"     "fv3_history2d",  "all",  .false.,  "none",  2
221 | "gfs_sfc",     "soilt3",      "soilt3"     "fv3_history2d",  "all",  .false.,  "none",  2
222 | "gfs_sfc",     "soilt4",      "soilt4"     "fv3_history2d",  "all",  .false.,  "none",  2
223 | "gfs_sfc",     "soilw1",      "soilw1"     "fv3_history2d",  "all",  .false.,  "none",  2
224 | "gfs_sfc",     "soilw2",      "soilw2"     "fv3_history2d",  "all",  .false.,  "none",  2
225 | "gfs_sfc",     "soilw3",      "soilw3"     "fv3_history2d",  "all",  .false.,  "none",  2
226 | "gfs_sfc",     "soilw4",      "soilw4"     "fv3_history2d",  "all",  .false.,  "none",  2
227 | "gfs_sfc",     "slc_1",       "soill1",    "fv3_history2d",  "all",  .false.,  "none",  2
228 | "gfs_sfc",     "slc_2",       "soill2",    "fv3_history2d",  "all",  .false.,  "none",  2
229 | "gfs_sfc",     "slc_3",       "soill3",    "fv3_history2d",  "all",  .false.,  "none",  2
230 | "gfs_sfc",     "slc_4",       "soill4",    "fv3_history2d",  "all",  .false.,  "none",  2
231 | "gfs_sfc",     "slope",       "sltyp",     "fv3_history2d",  "all",  .false.,  "none",  2
232 | "gfs_sfc",     "alnsf",       "alnsf",     "fv3_history2d",  "all",  .false.,  "none",  2
233 | "gfs_sfc",     "alnwf",       "alnwf",     "fv3_history2d",  "all",  .false.,  "none",  2
234 | "gfs_sfc",     "alvsf",       "alvsf",     "fv3_history2d",  "all",  .false.,  "none",  2
235 | "gfs_sfc",     "alvwf",       "alvwf",     "fv3_history2d",  "all",  .false.,  "none",  2
236 | "gfs_sfc",     "canopy",      "cnwat",     "fv3_history2d",  "all",  .false.,  "none",  2
237 | "gfs_sfc",     "facsf",       "facsf",     "fv3_history2d",  "all",  .false.,  "none",  2
238 | "gfs_sfc",     "facwf",       "facwf",     "fv3_history2d",  "all",  .false.,  "none",  2
239 | "gfs_sfc",     "ffhh",        "ffhh",      "fv3_history2d",  "all",  .false.,  "none",  2
240 | "gfs_sfc",     "ffmm",        "ffmm",      "fv3_history2d",  "all",  .false.,  "none",  2
241 | "gfs_sfc",     "fice",        "icec",      "fv3_history2d",  "all",  .false.,  "none",  2
242 | "gfs_sfc",     "hice",        "icetk",     "fv3_history2d",  "all",  .false.,  "none",  2
243 | "gfs_sfc",     "snoalb",      "snoalb",    "fv3_history2d",  "all",  .false.,  "none",  2
244 | "gfs_sfc",     "shdmax",      "shdmax",    "fv3_history2d",  "all",  .false.,  "none",  2
245 | "gfs_sfc",     "shdmin",      "shdmin",    "fv3_history2d",  "all",  .false.,  "none",  2
246 | "gfs_sfc",     "snowd",       "snod",      "fv3_history2d",  "all",  .false.,  "none",  2
247 | "gfs_sfc",     "tg3",         "tg3",       "fv3_history2d",  "all",  .false.,  "none",  2
248 | "gfs_sfc",     "tisfc",       "tisfc",     "fv3_history2d",  "all",  .false.,  "none",  2
249 | "gfs_sfc",     "tref",        "tref",      "fv3_history2d",  "all",  .false.,  "none",  2
250 | "gfs_sfc",     "z_c",         "zc",       "fv3_history2d",  "all",  .false.,  "none",  2
251 | "gfs_sfc",     "c_0",         "c0",       "fv3_history2d",  "all",  .false.,  "none",  2
252 | "gfs_sfc",     "c_d",         "cd",       "fv3_history2d",  "all",  .false.,  "none",  2
253 | "gfs_sfc",     "w_0",         "w0",       "fv3_history2d",  "all",  .false.,  "none",  2
254 | "gfs_sfc",     "w_d",         "wd",       "fv3_history2d",  "all",  .false.,  "none",  2
255 | "gfs_sfc",     "xt",          "xt",        "fv3_history2d",  "all",  .false.,  "none",  2
256 | "gfs_sfc",     "xz",          "xz",        "fv3_history2d",  "all",  .false.,  "none",  2
257 | "gfs_sfc",     "dt_cool",     "dtcool",    "fv3_history2d",  "all",  .false.,  "none",  2
258 | "gfs_sfc",     "xs",          "xs",        "fv3_history2d",  "all",  .false.,  "none",  2
259 | "gfs_sfc",     "xu",          "xu",        "fv3_history2d",  "all",  .false.,  "none",  2
260 | "gfs_sfc",     "xv",          "xv",        "fv3_history2d",  "all",  .false.,  "none",  2
261 | "gfs_sfc",     "xtts",        "xtts",      "fv3_history2d",  "all",  .false.,  "none",  2
262 | "gfs_sfc",     "xzts",        "xzts",      "fv3_history2d",  "all",  .false.,  "none",  2
263 | "gfs_sfc",     "d_conv",      "dconv",    "fv3_history2d",  "all",  .false.,  "none",  2
264 | "gfs_sfc",     "qrain",       "qrain",     "fv3_history2d",  "all",  .false.,  "none",  2
265 | 
266 | "gfs_phys",    "acond",        "acond",         "fv3_history2d",  "all",  .false.,  "none",  2
267 | "gfs_phys",    "cduvb_ave",    "cduvb_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
268 | "gfs_phys",    "cpofp",        "cpofp",         "fv3_history2d",  "all",  .false.,  "none",  2
269 | "gfs_phys",    "duvb_ave",     "duvb_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
270 | "gfs_phys",    "csdlf_ave",    "csdlf",         "fv3_history2d",  "all",  .false.,  "none",  2
271 | "gfs_phys",    "csusf_ave",    "csusf",         "fv3_history2d",  "all",  .false.,  "none",  2
272 | "gfs_phys",    "csusf_avetoa", "csusftoa",      "fv3_history2d",  "all",  .false.,  "none",  2
273 | "gfs_phys",    "csdsf_ave",    "csdsf",         "fv3_history2d",  "all",  .false.,  "none",  2
274 | "gfs_phys",    "csulf_ave",    "csulf",         "fv3_history2d",  "all",  .false.,  "none",  2
275 | "gfs_phys",    "csulf_avetoa", "csulftoa",      "fv3_history2d",  "all",  .false.,  "none",  2
276 | "gfs_phys",    "cwork_ave",    "cwork_aveclm",  "fv3_history2d",  "all",  .false.,  "none",  2
277 | "gfs_phys",    "evbs_ave",     "evbs_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
278 | "gfs_phys",    "evcw_ave",     "evcw_ave",      "fv3_history2d",  "all",  .false.,  "none",  2
279 | "gfs_phys",    "fldcp",        "fldcp",         "fv3_history2d",  "all",  .false.,  "none",  2
280 | "gfs_phys",    "hgt_hyblev1",  "hgt_hyblev1",   "fv3_history2d",  "all",  .false.,  "none",  2
281 | "gfs_phys",    "spfh_hyblev1", "spfh_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
282 | "gfs_phys",    "ugrd_hyblev1", "ugrd_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
283 | "gfs_phys",    "vgrd_hyblev1", "vgrd_hyblev1",  "fv3_history2d",  "all",  .false.,  "none",  2
284 | "gfs_phys",    "tmp_hyblev1",  "tmp_hyblev1",   "fv3_history2d",  "all",  .false.,  "none",  2
285 | "gfs_phys",    "gfluxi",       "gflux",         "fv3_history2d",  "all",  .false.,  "none",  2
286 | "gfs_phys",    "lhtfl",        "lhtfl",         "fv3_history2d",  "all",  .false.,  "none",  2
287 | "gfs_phys",    "shtfl",        "shtfl",         "fv3_history2d",  "all",  .false.,  "none",  2
288 | "gfs_phys",    "pevpr",        "pevpr",         "fv3_history2d",  "all",  .false.,  "none",  2
289 | "gfs_phys",    "pevpr_ave",    "pevpr_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
290 | "gfs_phys",    "sbsno_ave",    "sbsno_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
291 | "gfs_phys",    "sfexc",        "sfexc",         "fv3_history2d",  "all",  .false.,  "none",  2
292 | "gfs_phys",    "snohf",        "snohf",         "fv3_history2d",  "all",  .false.,  "none",  2
293 | "gfs_phys",    "snowc_ave",    "snowc_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
294 | "gfs_phys",    "spfhmax2m",    "spfhmax_max2m", "fv3_history2d",  "all",  .false.,  "none",  2
295 | "gfs_phys",    "spfhmin2m",    "spfhmin_min2m", "fv3_history2d",  "all",  .false.,  "none",  2
296 | "gfs_phys",    "tmpmax2m",     "tmax_max2m",    "fv3_history2d",  "all",  .false.,  "none",  2
297 | "gfs_phys",    "tmpmin2m",     "tmin_min2m",    "fv3_history2d",  "all",  .false.,  "none",  2
298 | "gfs_phys",    "ssrun_acc",    "ssrun_acc",     "fv3_history2d",  "all",  .false.,  "none",  2
299 | "gfs_phys",    "sunsd_acc",    "sunsd_acc",     "fv3_history2d",  "all",  .false.,  "none",  2
300 | "gfs_phys",    "watr_acc",     "watr_acc",      "fv3_history2d",  "all",  .false.,  "none",  2
301 | "gfs_phys",    "wilt",         "wilt",          "fv3_history2d",  "all",  .false.,  "none",  2
302 | "gfs_phys",    "vbdsf_ave",    "vbdsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
303 | "gfs_phys",    "vddsf_ave",    "vddsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
304 | "gfs_phys",    "nbdsf_ave",    "nbdsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
305 | "gfs_phys",    "nddsf_ave",    "nddsf_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
306 | "gfs_phys",    "trans_ave",    "trans_ave",     "fv3_history2d",  "all",  .false.,  "none",  2
307 | 
308 | # Reflectivity from GFDL microphysics
309 | "gfs_phys", "refl_10cm", "refl_10cm", "fv3_history2d", "all", .false., "none", 2
310 | 
311 | #Max/Min must be kept in separate files.  Time is controlled by diag_table
312 | # "dynamics",  "uh25",             "MXUPHL2_5km",     "maxmin2D", "all", max, "none", 2
313 | # "dynamics",  "uh25",             "MNUPHL2_5km",     "maxmin2D", "all", min, "none", 2
314 | # "dynamics", "max_reflectivity",  "MAXREFC",         "maxmin2D", "all", max, "none", 2
315 | # "dynamics", "base_reflectivity", "MAXREF_1km",      "maxmin2D", "all", max, "none", 2
316 | #
317 | #=============================================================================================
318 | #
319 | #====> This file can be used with diag_manager/v2.0a (or higher) <====
320 | #
321 | #
322 | #  FORMATS FOR FILE ENTRIES (not all input values are used)
323 | #  ------------------------
324 | #
325 | #"file_name", output_freq, "output_units", format, "time_units", "long_name",
326 | #
327 | #
328 | #output_freq:  > 0  output frequency in "output_units"
329 | #              = 0  output frequency every time step
330 | #              =-1  output frequency at end of run
331 | #
332 | #output_units = units used for output frequency
333 | #               (years, months, days, minutes, hours, seconds)
334 | #
335 | #time_units   = units used to label the time axis
336 | #               (days, minutes, hours, seconds)
337 | #
338 | #
339 | #  FORMAT FOR FIELD ENTRIES (not all input values are used)
340 | #  ------------------------
341 | #
342 | #"module_name", "field_name", "output_name", "file_name" "time_sampling", time_avg, "other_opts", packing
343 | #
344 | #time_avg = .true. or .false.
345 | #
346 | #packing  = 1  double precision
347 | #         = 2  float
348 | #         = 4  packed 16-bit integers
349 | #         = 8  packed 1-byte (not tested?)
350 | 


--------------------------------------------------------------------------------
/cime_config/buildnml:
--------------------------------------------------------------------------------
   1 | #!/usr/bin/env python
   2 | 
   3 | """ufsatm namelist creator
   4 | """
   5 | 
   6 | # Typically ignore this.
   7 | # pylint: disable=invalid-name
   8 | 
   9 | # Disable these because this is our standard setup
  10 | # pylint: disable=wildcard-import,unused-wildcard-import,wrong-import-position
  11 | 
  12 | import os, sys, copy, time
  13 | from datetime import datetime
  14 | 
  15 | CIMEROOT = os.environ.get("CIMEROOT")
  16 | if CIMEROOT is None:
  17 |     raise SystemExit("ERROR: must set CIMEROOT environment variable")
  18 | sys.path.append(os.path.join(CIMEROOT, "scripts", "Tools"))
  19 | 
  20 | from standard_script_setup import *
  21 | from CIME.case import Case
  22 | from CIME.nmlgen import NamelistGenerator
  23 | from CIME.namelist import parse
  24 | from CIME.buildnml import create_namelist_infile, parse_input
  25 | from CIME.utils import expect, safe_copy, symlink_force, ls_sorted_by_mtime
  26 | 
  27 | logger = logging.getLogger(__name__)
  28 | 
  29 | def date_yyyymmddhh(case):
  30 |     run_start_date = case.get_value('RUN_STARTDATE').split('-')
  31 |     yyyy = int(run_start_date[0])
  32 |     mm = int(run_start_date[1])
  33 |     dd = int(run_start_date[2])
  34 |     run_start_tod = case.get_value('START_TOD')
  35 |     hh = int(run_start_tod)//3600
  36 |     return yyyy, mm, dd, hh
  37 | 
  38 | # find factors of a number
  39 | def factors(n):
  40 |     return set(x for tup in ([i, n//i] for i in range(1, int(n**0.5)+1) if n % i == 0) for x in tup)
  41 | 
  42 | # check if all elements in a list are same
  43 | def checkList(lst):
  44 |     ele = lst[0]
  45 |     chk = True
  46 |     # Comparing each element with first item
  47 |     for item in lst:
  48 |         if ele != item:
  49 |             chk = False
  50 |             break
  51 |     return chk
  52 | 
  53 | # returns active components
  54 | def active_components(case):
  55 |     # query compset
  56 |     compset = case.get_value("COMPSET")
  57 |     # parse compset
  58 |     components = compset.split("_")[1:]
  59 |     # remove stub components
  60 |     components = [ x for x in components if "S" not in x[0] ]
  61 | 
  62 |     return components
  63 | 
  64 | # converts one item list to value, if list has more than one item then do nothing
  65 | def list_to_value(val):
  66 |     if isinstance(val, list):
  67 |         if len(val) == 1:
  68 |             return val[0]
  69 |         else:
  70 |             return val
  71 |     else:
  72 |         return val
  73 | 
  74 | # keep only changed namelist options
  75 | def nmlKeepChangedOnly(nmlgen_ini, nmlgen_cur, namelist_user):
  76 | 
  77 |     nmlgen_ret = copy.copy(nmlgen_cur)
  78 |     #pylint: disable=protected-access
  79 |     for nml in nmlgen_cur._namelist.get_group_names():
  80 |         for var in nmlgen_cur.get_group_variables(nml):
  81 |             matched = False
  82 | 
  83 |             # if it is an user modified parameter, add it to namelist in any case
  84 |             lst = namelist_user.get_value(var)
  85 |             if any(len(item) > 0 for item in lst):
  86 |                 continue
  87 | 
  88 |             # list of namelist options that will always appear in the namelist file
  89 |             lst = ['ccpp_suite', 'nstf_name']
  90 |             if var in lst:
  91 |                 continue
  92 | 
  93 |             # get type and size of namelist variable
  94 |             var_type, _, var_size, = nmlgen_cur._definition.split_type_string(var)
  95 | 
  96 |             # retrieve the initial (default) and current values of the namelist variable
  97 |             ini = nmlgen_ini.get_value(var)
  98 |             cur = nmlgen_cur.get_value(var)
  99 | 
 100 |             # if it is list and size is different from var_size
 101 |             if var_size > 1:
 102 |                 # create empty list
 103 |                 var_act = [None]*var_size
 104 |                 var_def = [None]*var_size
 105 | 
 106 |                 # force to have same length
 107 |                 var_act_len = len(cur)
 108 |                 var_act[0:var_act_len] = [x for x in cur]
 109 |                 var_def_len = len(ini)
 110 |                 var_def[0:var_def_len] = [x for x in ini]
 111 | 
 112 |                 # compare
 113 |                 if var_type == 'character' or var_type == 'logical':
 114 |                     var_act = ['xyz' if x is None else x.lower() for x in var_act]
 115 |                     var_def = ['xyz' if x is None else x.lower() for x in var_def]
 116 |                     matched = all(y.startswith(x) for x,y in zip(var_act,var_def))
 117 |                 elif var_type == 'integer':
 118 |                     var_act = [-99 if x is None else int(x) for x in var_act]
 119 |                     var_def = [-99 if x is None else int(x) for x in var_def]
 120 |                     matched = all(x == y for x,y in zip(var_act,var_def))
 121 |                 elif var_type == 'real':
 122 |                     var_act = [-99.9 if x is None else float(eval(x.lower().replace('d','e'))) for x in var_act]
 123 |                     var_def = [-99.9 if x is None else float(eval(x.lower().replace('d','e'))) for x in var_def]
 124 |                     matched = all(x == y for x,y in zip(var_act,var_def))
 125 |             else:
 126 |                 if var_type == 'character' or var_type == 'logical':
 127 |                     if not ini.strip() == "":
 128 |                         if cur.startswith(ini):
 129 |                             matched = True
 130 |                     else:
 131 |                         if ini.strip() == "" and cur.strip() == "":
 132 |                             matched = True
 133 |                 elif var_type == 'integer':
 134 |                     if ini:
 135 |                         if int(cur) == int(ini):
 136 |                             matched = True
 137 |                     else:
 138 |                         if not (ini and cur):
 139 |                             matched = True
 140 |                 elif var_type == 'real' and ini and cur:
 141 |                     if float(eval(ini.lower().replace('d','e'))) == \
 142 |                        float(eval(cur.lower().replace('d','e'))):
 143 |                         matched = True
 144 | 
 145 |             # if there is a match, remove it from the list
 146 |             if matched:
 147 |                 nmlgen_ret._namelist.delete_variable(nml, var)
 148 | 
 149 |     return nmlgen_ret
 150 | 
 151 | # copy namelist options from one namelist to other
 152 | def nmlOverwrite(nmlgen_src, nmlgen_dst):
 153 | 
 154 |     nmlgen_ret = copy.copy(nmlgen_dst)
 155 |     #pylint: disable=protected-access
 156 |     for nml in nmlgen_src.get_group_names():
 157 |         for var in nmlgen_src.get_group_variables(nml):
 158 |             nmlgen_ret.set_value(var, nmlgen_src.get_value(var))
 159 | 
 160 |     return nmlgen_ret
 161 | 
 162 | # prepares the input files of a case and places in rundir:
 163 | def prep_input(case, casedocsdir, datestamp, nmlgen_input, prefix, input_type):
 164 |     casename = case.get_value("CASE")
 165 |     Buildconf = case.get_value("CASEBUILD")
 166 |     rundir = case.get_value("RUNDIR")
 167 |     atm_grid = case.get_value("ATM_GRID").replace('r', '')
 168 |     testcase = case.get_value("TEST")
 169 |     din_loc_root = case.get_value("DIN_LOC_ROOT")
 170 |     din_loc_ic = case.get_value("DIN_LOC_IC")
 171 |     is_restart =  case.get_value("CONTINUE_RUN")
 172 |     srcroot = case.get_value("SRCROOT")
 173 |     caseroot = case.get_value("CASEROOT")
 174 | 
 175 |     #----------------------------------------------------
 176 |     # Query jobs
 177 |     #----------------------------------------------------
 178 | 
 179 |     env_workflow = case.get_env("workflow")
 180 |     jobs = env_workflow.get_jobs()
 181 | 
 182 |     #----------------------------------------------------
 183 |     # Create list of input files
 184 |     #----------------------------------------------------
 185 | 
 186 |     # TODO: make it xmlchnage variable
 187 |     new_o3forc = True
 188 |     if "s2s" in app:
 189 |         new_o3forc = False
 190 | 
 191 |     # Query date and time
 192 |     yyyy, mm, dd, hh = date_yyyymmddhh(case)
 193 | 
 194 |     # Define base directories
 195 |     icdir = os.path.join(din_loc_ic,"{:04d}{:02d}".format(yyyy,mm),"{:04d}{:02d}{:02d}".format(yyyy,mm,dd))
 196 |     if "hafs" in app:
 197 |         dir_fix_am  = os.path.join(din_loc_root,"regional","fix_am")
 198 |         dir_fix_ufsatm = os.path.join(din_loc_root,"regional","fix",atm_grid)
 199 |         dir_fix_parm = os.path.join(din_loc_root,"parm")
 200 |         dir_fix_lib = os.path.join(din_loc_root,"lib")
 201 |         dir_bdy = os.path.join(din_loc_root,"regional","bcond","{:04d}{:02d}{:02d}{:02d}".format(int(yyyy),int(mm),int(dd),hh))
 202 |     else:
 203 |         dir_fix_am  = os.path.join(din_loc_root,"global","fix","fix_am.v{}".format(datestamp))
 204 |         if "s2s" in app:
 205 |             dir_fix_ufsatm = os.path.join(din_loc_root,"global","fix","fix_fv3_gmted2010.v{}".format(datestamp),"{}_s2s".format(atm_grid))
 206 |         else:
 207 |             dir_fix_ufsatm = os.path.join(din_loc_root,"global","fix","fix_fv3_gmted2010.v{}".format(datestamp),atm_grid)
 208 |         dir_fix_parm = os.path.join(din_loc_root,"parm")
 209 |         dir_fix_lib = os.path.join(din_loc_root,"lib")
 210 | 
 211 |     # Create generic dictionary to hold input files: [source_file, "ln" | "cp", target_file]
 212 |     input_files = dict()
 213 | 
 214 |     # Grid and orography data
 215 |     if "hafs" in app:
 216 |         halo_lst = ["halo0", "halo3", "halo4"]
 217 |         for halo in halo_lst:
 218 |             input_files["grid_tile7_{}".format(halo)] = [os.path.join(dir_fix_ufsatm,atm_grid+"_grid.tile7.{}.nc".format(halo)), "ln", os.path.join("INPUT",atm_grid+"_grid.tile7.{}.nc".format(halo))]
 219 |             input_files["orog_tile7_{}".format(halo)] = [os.path.join(dir_fix_ufsatm,atm_grid+"_oro_data.tile7.{}.nc".format(halo)), "ln", os.path.join("INPUT",atm_grid+"_oro_data.tile7.{}.nc".format(halo))]
 220 |         input_files["oro_data_tile7h0"] = [os.path.join(dir_fix_ufsatm,atm_grid+"_oro_data.tile7.halo0.nc"), "ln",  os.path.join("INPUT","oro_data.nc")]
 221 |         input_files["oro_data_tile7h4"] = [os.path.join(dir_fix_ufsatm,atm_grid+"_oro_data.tile7.halo4.nc"), "ln",  os.path.join("INPUT","oro_data.tile7.halo4.nc")]
 222 |         input_files["grid_tile7h3"] = [os.path.join(dir_fix_ufsatm,atm_grid+"_grid.tile7.halo3.nc"), "ln",  os.path.join("INPUT",atm_grid+"_grid.tile7.nc")]
 223 |         input_files["grid_tile7h0"] = [os.path.join(dir_fix_ufsatm,atm_grid+"_grid.tile7.halo0.nc"), "ln",  os.path.join("INPUT","grid.tile7.halo0.nc")]
 224 |         input_files["grid_tile7h4"] = [os.path.join(dir_fix_ufsatm,atm_grid+"_grid.tile7.halo4.nc"), "ln",  os.path.join("INPUT","grid.tile7.halo4.nc")]
 225 |     else:
 226 |         for tile in range(1,7):
 227 |             input_files["grid_tile{}".format(tile)] = [os.path.join(dir_fix_ufsatm,atm_grid+"_grid.tile{}.nc".format(tile)), "ln", os.path.join("INPUT",atm_grid+"_grid.tile{}.nc".format(tile))]
 228 |             input_files["orog_data{}".format(tile)] = [os.path.join(dir_fix_ufsatm,atm_grid+"_oro_data.tile{}.nc".format(tile)), "ln", os.path.join("INPUT","oro_data.tile{}.nc".format(tile))]
 229 | 
 230 |     if "s2s" in app:
 231 |         input_files["grid_spec"] = [os.path.join(icdir,"grid_spec.nc"), "ln", os.path.join("INPUT","grid_spec.nc")]
 232 |     else:
 233 |         input_files["grid_spec"] = [os.path.join(dir_fix_ufsatm,atm_grid+"_mosaic.nc"), "ln", os.path.join("INPUT","grid_spec.nc")]
 234 |     input_files["grid_mosaic"] = [os.path.join(dir_fix_ufsatm,atm_grid+"_mosaic.nc"), "ln", os.path.join("INPUT",atm_grid+"_mosaic.nc")]
 235 | 
 236 |     # GFS standard input files
 237 |     iaer = nmlgen_input.get_value('iaer')
 238 |     ico2 = nmlgen_input.get_value('ico2')
 239 | 
 240 |     if new_o3forc:
 241 |         input_files["o3forc"] = [os.path.join(dir_fix_am,"ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77"), "ln", "global_o3prdlos.f77"]
 242 |     else:
 243 |         input_files["o3forc"] = [os.path.join(dir_fix_am,"global_o3prdlos.f77"), "ln", "global_o3prdlos.f77"]
 244 | 
 245 |     input_files["h2oforc"] = [os.path.join(dir_fix_am,"global_h2o_pltc.f77"), "ln", "global_h2oprdlos.f77"]
 246 |     input_files["solcnst"] = [os.path.join(dir_fix_am,"global_solarconstant_noaa_an.txt"), "ln", "solarconstant_noaa_an.txt"]
 247 |     input_files["sfcemis"] = [os.path.join(dir_fix_am,"global_sfc_emissivity_idx.txt"), "ln", "sfc_emissivity_idx.txt"]
 248 |     input_files["co2hist"] = [os.path.join(dir_fix_am,"global_co2historicaldata_glob.txt"), "ln", "co2historicaldata_glob.txt"]
 249 |     input_files["co2mont"] = [os.path.join(dir_fix_am,"co2monthlycyc.txt"), "ln", "co2monthlycyc.txt"]
 250 | 
 251 |     # NOTE: CIME.namelist.parse returns single values as one element list
 252 |     ico2 = list_to_value(ico2)
 253 |     if ico2 and int(ico2) > 0:
 254 |         # TODO: make it automatic
 255 |         yy = int(time.strftime("%Y,%m,%d,%H,%M,%S").split(',')[0])
 256 |         for year in range(2009,yy+1):
 257 |             input_files["co2his_{}".format(year)] = [os.path.join(dir_fix_am,"fix_co2_proj","global_co2historicaldata_{}.txt".format(year)), "ln", "co2historicaldata_{}.txt".format(year)]
 258 | 
 259 |     input_files["clmaero"] = [os.path.join(dir_fix_am,"global_climaeropac_global.txt"), "ln", "aerosol.dat"]
 260 | 
 261 |     # NOTE: CIME.namelist.parse returns single values as one element list
 262 |     iaer = list_to_value(iaer)
 263 |     if iaer and int(iaer) > 0 and "hafs" not in app:
 264 |         for year in range(1850,2000,10):
 265 |             input_files["volaer_{}".format(year)] = [os.path.join(dir_fix_am,"global_volcanic_aerosols_{}-{}.txt".format(year,year+9)), "ln", "volcanic_aerosols_{}-{}.txt".format(year,year+9)]
 266 | 
 267 |     # Fixed files
 268 |     for var in nmlgen_input.get_group_variables('namsfc'):
 269 |         #pylint: disable=protected-access
 270 |         var_str = str(nmlgen_input.get_value(var)).replace("'", "").strip()
 271 |         if not var_str.startswith('igbp') and var_str.endswith('.grb'):
 272 |             input_files[var] = [var_str, "ln", os.path.basename(var_str)]
 273 | 
 274 |     # Look for NCEPLIBS_DIR
 275 |     nceplibs_dir = os.environ.get("NCEPLIBS_DIR")
 276 |     if "case.chgres" in jobs:
 277 |         expect(nceplibs_dir, "NCEPLIBS_DIR environment variable need to be set to process raw input data!")
 278 |         expect(os.path.exists(nceplibs_dir),"NCEPLIBS_DIR {} not found".format(nceplibs_dir))
 279 | 
 280 |     # Pre-processing specific files (chgres)
 281 |     if "case.chgres" in jobs:
 282 |         # Fixed files for chgres
 283 |         for tile in range(1,7):
 284 |             for f in ["facsf", "maximum_snow_albedo", "slope_type", "snowfree_albedo", "soil_type", "substrate_temperature", "vegetation_greenness", "vegetation_type"]:
 285 |                 input_files["{}{}".format(f,tile)] = [os.path.join(dir_fix_ufsatm,"fix_sfc",atm_grid+".{}.tile{}.nc".format(f,tile)), "ln", os.path.join("INPUT",atm_grid+".{}.tile{}.nc".format(f,tile))]
 286 | 
 287 |         # Vertical layer file for chgres
 288 |         levp = nmlgen_input.get_value("levp")
 289 |         input_files["global_hyblev"] = [os.path.join(dir_fix_am,"global_hyblev.l{}.txt".format(levp)), "ln", os.path.join("INPUT","global_hyblev.l{}.txt".format(levp))]
 290 | 
 291 |         # Grib2 specific file
 292 |         input_files["var_map"] = [os.path.join(nceplibs_dir,"share","GFSphys_var_map.txt"), "ln", "GFSphys_var_map.txt"]
 293 | 
 294 |     # Post-processing specific files (gfs_post, copy from source directory)
 295 |     if "case.gfs_post" in jobs:
 296 |         src_file = os.path.join(caseroot,"SourceMods","src.ufsatm","postxconfig-NT-GFS.txt")
 297 |         dst_file = os.path.join(rundir, "postxconfig-NT-GFS.txt")
 298 |         if os.path.isfile(dst_file):
 299 |             os.remove(dst_file)
 300 | 
 301 |         if os.path.isfile(src_file):
 302 |             safe_copy(src_file, dst_file)
 303 |             logger.info("Using {} for post-processing".format(src_file))
 304 |         else:
 305 |             logger.info("Using {} for post-processing".format(os.path.join(nceplibs_dir,"share","postxconfig-NT-GFS.txt")))
 306 |             input_files["postxconfig1"] = [os.path.join(nceplibs_dir,"share","postxconfig-NT-GFS.txt"), "ln", "postxconfig-NT-GFS.txt"]
 307 | 
 308 |         src_file = os.path.join(caseroot,"SourceMods","src.ufsatm","postxconfig-NT-GFS-F00.txt")
 309 |         dst_file = os.path.join(rundir, "postxconfig-NT-GFS-F00.txt")
 310 |         if os.path.isfile(dst_file):
 311 |             os.remove(dst_file)
 312 | 
 313 |         if os.path.isfile(src_file):
 314 |             safe_copy(src_file, dst_file)
 315 |             logger.info("Using {} for post-processing".format(src_file))
 316 |         else:
 317 |             logger.info("Using {} for post-processing".format(os.path.join(nceplibs_dir,"share","postxconfig-NT-GFS-F00.txt")))
 318 |             input_files["postxconfig2"] = [os.path.join(nceplibs_dir,"share","postxconfig-NT-GFS-F00.txt"), "ln", "postxconfig-NT-GFS-F00.txt"]
 319 | 
 320 |         input_files["params_grib2_tbl"] = [os.path.join(nceplibs_dir,"share","params_grib2_tbl_new"), "ln", "params_grib2_tbl_new"]
 321 | 
 322 |     # Make sure that rundir exists. If not, make it:
 323 |     if not os.path.exists(rundir):
 324 |         os.makedirs(rundir)
 325 | 
 326 |     # Create INPUT and RESTART directories
 327 |     logger.info("\tCreating INPUT and RESTART directory")
 328 |     for _dir in ("INPUT","RESTART"):
 329 |         fulldir = os.path.join(rundir, _dir)
 330 |         if not os.path.exists(fulldir):
 331 |             os.makedirs(fulldir)
 332 | 
 333 |     # For cime tests that use two test directories
 334 |     rundirdst = rundir
 335 |     if rundir.endswith("case2run"):
 336 |         rundirsrc = os.path.abspath(os.path.join(rundir, os.pardir))
 337 |     else:
 338 |         rundirsrc = rundir
 339 | 
 340 |     # Initial conditions
 341 |     if is_restart: # Warm start
 342 |         # Tiled files
 343 |         tile_max = 7
 344 |         if "hafs" in app:
 345 |             # Regional case has only one tile (1)
 346 |             tile_max = 2
 347 | 
 348 |         lst = ["fv_core.res", "fv_srf_wnd.res", "fv_tracer.res", "phy_data", "sfc_data"]
 349 |         lst = [prefix + f for f in lst]
 350 |         for f in lst:
 351 |             for tile in range(1,tile_max):
 352 |                 if "_data" in f and "hafs" in app:
 353 |                     src_file = os.path.join(rundir,"RESTART","{}.nc".format(f))
 354 |                     tgt_file = os.path.join(rundir,"INPUT","{}.nc".format(f.replace(prefix,"")))
 355 |                 else:
 356 |                     src_file = os.path.join(rundir,"RESTART","{}.tile{}.nc".format(f,tile))
 357 |                     tgt_file = os.path.join(rundir,"INPUT","{}.tile{}.nc".format(f.replace(prefix,""),tile))
 358 |                 if not os.path.isfile(src_file):
 359 |                     expect(False, "{} is missing.".format(src_file))
 360 |                 else:
 361 |                     safe_copy(src_file, tgt_file)
 362 | 
 363 |         # Others
 364 |         lst = ["fv_core.res.nc", "coupler.res"]
 365 |         lst = [prefix + f for f in lst]
 366 |         for f in lst:
 367 |             src_file = os.path.join(rundir,"RESTART",f)
 368 |             tgt_file = os.path.join(rundir,"INPUT",f.replace(prefix,""))
 369 |             if not os.path.isfile(src_file):
 370 |                 expect(False, "{} is missing.".format(src_file))
 371 |             else:
 372 |                 safe_copy(src_file, tgt_file)
 373 | 
 374 |         # Reorder boundary files
 375 |         if "hafs" in app:
 376 |             # Boundary conditions
 377 |             lst = ls_sorted_by_mtime(dir_bdy)
 378 |             lst.remove("gfs_ctrl.nc")
 379 |             lst.remove("gfs_data.tile7.nc")
 380 |             lst.remove("sfc_data.tile7.nc")
 381 |             for f in lst:
 382 |                 # Remove old links
 383 |                 src_file = os.path.join(rundirdst,"INPUT",f)
 384 |                 if os.path.isfile(src_file):
 385 |                     os.remove(src_file)
 386 | 
 387 |                 # Link files again
 388 |                 time_step = int(f.split(".")[2])
 389 |                 #logger.warning("time_step = {}".format(time_step))
 390 |                 if time_step < nhours_fcst_pre:
 391 |                     continue
 392 |                 else:
 393 |                     src_file = os.path.join(dir_bdy,f)
 394 |                     dst_file = os.path.join(rundir,"INPUT","gfs_bndy.tile7.{:03d}.nc".format(time_step-nhours_fcst_pre))
 395 |                     #logger.warning("{} --> {}".format(src_file, dst_file))
 396 |                     symlink_force(src_file, dst_file)
 397 | 
 398 |     else: # Cold start
 399 |         if "hafs" in app:
 400 |             # Boundary conditions
 401 |             lst = ls_sorted_by_mtime(dir_bdy)
 402 |             for f in lst:
 403 |                 # Link files
 404 |                 symlink_force(os.path.join(dir_bdy,f), os.path.join(rundirdst,"INPUT",f))
 405 | 
 406 |             symlink_force(os.path.join(dir_bdy,"sfc_data.tile7.nc"), os.path.join(rundirdst,"INPUT","sfc_data.nc"))
 407 |             symlink_force(os.path.join(dir_bdy,"gfs_data.tile7.nc"), os.path.join(rundirdst,"INPUT","gfs_data.nc"))
 408 |         else:
 409 |             # Remove restart files form INPUT/ directory, if there are
 410 |             # Tiled files
 411 |             lst = ["fv_core.res", "fv_srf_wnd.res", "fv_tracer.res", "phy_data", "sfc_data"]
 412 |             for f in lst:
 413 |                 for tile in range(1,7):
 414 |                     src_file = os.path.join(rundir,"INPUT","{}.tile{}.nc".format(f,tile))
 415 |                     if os.path.isfile(src_file):
 416 |                         logger.warning("removing file {}".format(src_file))
 417 |                         os.remove(src_file)
 418 | 
 419 |             # Others
 420 |             lst = ["fv_core.res.nc", "coupler.res"]
 421 |             for f in lst:
 422 |                 src_file = os.path.join(rundir,"INPUT",f)
 423 |                 if os.path.isfile(src_file):
 424 |                     logger.warning("removing file {}".format(src_file))
 425 |                     os.remove(src_file)
 426 | 
 427 |             # Check chgres processes initial condition exists or not?
 428 |             src_file = os.path.join(rundirsrc,"INPUT","{}.".format(atm_grid)+"{:04d}-{:02d}-{:02d}".format(yyyy,mm,dd)+"_{:02d}.gfs_ctrl.nc".format(hh))
 429 |             if os.path.isfile(src_file):
 430 |                 # Link existing initial condition
 431 |                 symlink_force(src_file, os.path.join(rundirdst,"INPUT","gfs_ctrl.nc"))
 432 | 
 433 |                 lst = ["gfs_data", "sfc_data"]
 434 |                 for f in lst:
 435 |                     for tile in range(1,7):
 436 |                         src_file = os.path.join(rundirsrc,"INPUT","{}.".format(atm_grid)+"{:04d}-{:02d}-{:02d}".format(yyyy,mm,dd)+"_{:02d}.".format(hh)+f+".tile{}.nc".format(tile))
 437 |                         tgt_file = os.path.join(rundirdst,"INPUT","{}.tile{}.nc".format(f,tile))
 438 |                         if os.path.isfile(src_file):
 439 |                             symlink_force(src_file, tgt_file)
 440 |                             logger.info("chgres source file {} linked to {}".format(src_file, tgt_file))
 441 |                         else:
 442 |                             logger.debug("chgres source file {} not found".format(src_file))
 443 |             else:
 444 |                # Link pre-staged initial condition, not processed by workflow with chgres
 445 |                src_file = os.path.join(icdir,"gfs_ctrl.nc")
 446 |                if os.path.isfile(src_file):
 447 |                    symlink_force(src_file, os.path.join(rundirdst,"INPUT","gfs_ctrl.nc"))
 448 |                else:
 449 |                    logger.warning("initial condition file {} is required! Exiting ...".format(src_file))
 450 | 
 451 |                lst = ["gfs_data", "sfc_data"]
 452 |                for f in lst:
 453 |                    for tile in range(1,7):
 454 |                        src_file = os.path.join(icdir,f+".tile{}.nc".format(tile))
 455 |                        tgt_file = os.path.join(rundirdst,"INPUT","{}.tile{}.nc".format(f,tile))
 456 |                        if os.path.isfile(src_file):
 457 |                            symlink_force(src_file, tgt_file)
 458 |                            logger.info("initial condition file {} linked to {}".format(src_file, tgt_file))
 459 |                        else:
 460 |                            logger.warning("initial condition file {} is required! Exiting ...".format(src_file))
 461 | 
 462 |     # Write input file list
 463 |     with open(os.path.join(Buildconf,"ufsatm.input_data_list"), 'w') as input_data_list:
 464 |         for k,v in input_files.items():
 465 |             input_data_list.write(k+" = "+v[0]+"\n")
 466 | 
 467 |     # Copy/Link files
 468 |     for k,v in input_files.items():
 469 |         if not os.path.isfile(v[0]):
 470 |             logger.warning("WARNING: data file {} not found, will attempt to download.".format(v[0]))
 471 |         elif "ln" in v[1]:
 472 |             symlink_force(v[0], os.path.join(rundir,v[2]))
 473 |         elif "cp":
 474 |             safe_copy(v[0], os.path.join(rundir,v[2]))
 475 | 
 476 |     # Copy *_table files
 477 |     cimeroot_ufsatm = os.path.join(srcroot, "src", "model", "FV3", "cime", "cime_config")
 478 |     for f in ["data_table_{}".format(app), "diag_table_{}".format(app), "field_table_{}".format(app)]:
 479 |         if not os.path.isfile(os.path.join(rundir,f)):
 480 |             safe_copy(os.path.join(cimeroot_ufsatm,"tables",f),os.path.join(rundir,f.replace("_{}".format(app),"")))
 481 | 
 482 | # pylint: disable=too-many-arguments,too-many-locals,too-many-branches,too-many-statements
 483 | ####################################################################################
 484 | def _create_namelist_input(case, confdir, config, infile, nmlgen_model, nmlgen_input, nmlgen_input_def, namelist_user, datestamp, input_type):
 485 | ####################################################################################
 486 |     """Write out the namelist for this component.
 487 | 
 488 |     Most arguments are the same as those for `NamelistGenerator`.
 489 |     The `confdir` argument is used to specify the directory  in which output files will be placed.
 490 |     """
 491 |     #----------------------------------------------------
 492 |     # Clear out old data.
 493 |     #----------------------------------------------------
 494 |     data_list_path = os.path.join(case.get_case_root(), "Buildconf", "ufsatm.input_data_list")
 495 | 
 496 |     #----------------------------------------------------
 497 |     # Initialize namelist defaults
 498 |     #----------------------------------------------------
 499 | 
 500 |     nmlgen_input.init_defaults(infile, config)
 501 |     nmlgen_input_def.init_defaults(infile, {})
 502 | 
 503 |     #----------------------------------------------------
 504 |     # Modify namelist defaults
 505 |     #----------------------------------------------------
 506 | 
 507 |     # Define base directory
 508 |     din_loc_root = case.get_value("DIN_LOC_ROOT")
 509 |     if "hafs" in app:
 510 |         dir_fix_am  = os.path.join(din_loc_root,"regional","fix_am")
 511 |     else:
 512 |         dir_fix_am  = os.path.join(din_loc_root,"global","fix","fix_am.v{}".format(datestamp))
 513 | 
 514 |     # Spectral truncation and regular grid resolution based on FV3 resolution
 515 |     atm_grid = case.get_value("ATM_GRID").replace('r', '')
 516 |     res = int(atm_grid.replace('C',''))
 517 |     jcap = 2*res-2
 518 |     lonb = 4*res
 519 |     latb = 2*res
 520 | 
 521 |     # Customization for S2S, just for C96
 522 |     if "s2s" in app:
 523 |         if res == 96:
 524 |             jcap = 126
 525 |             lonb = 384
 526 |             latb = 190
 527 | 
 528 |     # Fix files, changes based on the selected resolution
 529 |     nmlgen_input.set_value('fnglac', value=os.path.join(dir_fix_am,"global_glacier.2x2.grb"))
 530 |     nmlgen_input.set_value('fnmxic', value=os.path.join(dir_fix_am,"global_maxice.2x2.grb"))
 531 |     nmlgen_input.set_value('fntsfc', value=os.path.join(dir_fix_am,"RTGSST.1982.2012.monthly.clim.grb"))
 532 |     nmlgen_input.set_value('fnsnoc', value=os.path.join(dir_fix_am,"global_snoclim.1.875.grb"))
 533 |     nmlgen_input.set_value('fnzorc', value="igbp")
 534 |     nmlgen_input.set_value('fnalbc2', value=os.path.join(dir_fix_am,"global_albedo4.1x1.grb"))
 535 |     nmlgen_input.set_value('fnaisc', value=os.path.join(dir_fix_am,"CFSR.SEAICE.1982.2012.monthly.clim.grb"))
 536 |     nmlgen_input.set_value('fntg3c', value=os.path.join(dir_fix_am,"global_tg3clim.2.6x1.5.grb"))
 537 |     nmlgen_input.set_value('fnvegc', value=os.path.join(dir_fix_am,"global_vegfrac.0.144.decpercent.grb"))
 538 |     if "mrweather" in app:
 539 |         nmlgen_input.set_value('fnmskh', value=os.path.join(dir_fix_am,"global_slmask.t1534.3072.1536.grb"))
 540 |     else:
 541 |         nmlgen_input.set_value('fnmskh', value=os.path.join(dir_fix_am,"seaice_newland.grb"))
 542 |     nmlgen_input.set_value('fnvmnc', value=os.path.join(dir_fix_am,"global_shdmin.0.144x0.144.grb"))
 543 |     nmlgen_input.set_value('fnvmxc', value=os.path.join(dir_fix_am,"global_shdmax.0.144x0.144.grb"))
 544 |     nmlgen_input.set_value('fnslpc', value=os.path.join(dir_fix_am,"global_slope.1x1.grb"))
 545 |     nmlgen_input.set_value('fnalbc', value=os.path.join(dir_fix_am,"global_snowfree_albedo.bosu.t{}.{}.{}.rg.grb".format(jcap,lonb,latb)))
 546 |     nmlgen_input.set_value('fnvetc', value=os.path.join(dir_fix_am,"global_vegtype.igbp.t{}.{}.{}.rg.grb".format(jcap,lonb,latb)))
 547 |     nmlgen_input.set_value('fnsotc', value=os.path.join(dir_fix_am,"global_soiltype.statsgo.t{}.{}.{}.rg.grb".format(jcap,lonb,latb)))
 548 |     nmlgen_input.set_value('fnabsc', value=os.path.join(dir_fix_am,"global_mxsnoalb.uariz.t{}.{}.{}.rg.grb".format(jcap,lonb,latb)))
 549 | 
 550 |     # If the appropriate resolution fix file is not present, use the highest resolution available (T1534)
 551 |     if "mrweather" in app:
 552 |         if res == 96 or res == 192:
 553 |             jcap = 1534
 554 |             lonb = 3072
 555 |             latb = 1536
 556 |             nmlgen_input.set_value('fnsmcc', value=os.path.join(dir_fix_am,"global_soilmgldas.statsgo.t{}.{}.{}.grb".format(jcap,lonb,latb)))
 557 |         else:
 558 |             nmlgen_input.set_value('fnsmcc', value=os.path.join(dir_fix_am,"global_soilmgldas.statsgo.t{}.{}.{}.grb".format(jcap,lonb,latb)))
 559 |     else:
 560 |         nmlgen_input.set_value('fnsmcc', value=os.path.join(dir_fix_am,"global_soilmgldas.t{}.{}.{}.grb".format(jcap,lonb,latb)))
 561 | 
 562 |     # Stochastic physics
 563 |     testcase = case.get_value("TEST")
 564 |     if testcase:
 565 |         nmlgen_input.set_value('iseed_skeb', 0)
 566 |         nmlgen_input.set_value('iseed_shum', 0)
 567 |         nmlgen_input.set_value('iseed_sppt', 0)
 568 |     else:
 569 |         # TODO: member option (-1: control, 0: ensemble mean, >0: ensemble member) need to be handled, for now it is assumed as 1
 570 |         member = 1
 571 |         cdate = int(datetime.now().strftime("%Y%m%d%H"))
 572 |         nmlgen_input.set_value('iseed_skeb', cdate*1000+member*10+1)
 573 |         nmlgen_input.set_value('iseed_shum', cdate*1000+member*10+2)
 574 |         nmlgen_input.set_value('iseed_sppt', cdate*1000+member*10+3)
 575 | 
 576 |     # Save namelist before making restart changes
 577 |     nmlgen_input_sav = copy.copy(nmlgen_input)
 578 | 
 579 |     # Restart
 580 |     is_restart =  case.get_value("CONTINUE_RUN")
 581 | 
 582 |     if is_restart: # Warm start
 583 |         nmlgen_input.set_value('warm_start', True)
 584 |         nmlgen_input.set_value('nggps_ic', False)
 585 |         nmlgen_input.set_value('external_ic', False)
 586 |         nmlgen_input.set_value('mountain', True)
 587 |         nmlgen_input.set_value('make_nh', False)
 588 |         nmlgen_input.set_value('na_init', 0)
 589 | 
 590 |         # Turn off nst spin up
 591 |         nstf_name = nmlgen_input.get_value('nstf_name')
 592 |         nstf_name[1] = '0'
 593 | 
 594 |         # Enable adding increment on the fly to the restarts
 595 |         read_increment = nmlgen_input.get_value('read_increment')
 596 |         if read_increment:
 597 |             nmlgen_input.set_value('res_latlon_dynamics', "INPUT/fv_rst.res.nc")
 598 | 
 599 |         # Set the forecast hour 'off-set'
 600 |         #if "s2s" in app:
 601 |         #    nmlgen_input.set_value('fhrot', 0)
 602 | 
 603 |     else: # Cold start
 604 |         # Set back to their defaults
 605 |         nmlgen_input.set_value('warm_start', nmlgen_input_sav.get_value('warm_start'))
 606 |         nmlgen_input.set_value('nggps_ic', nmlgen_input_sav.get_value('nggps_ic'))
 607 |         nmlgen_input.set_value('external_ic', nmlgen_input_sav.get_value('external_ic'))
 608 |         nmlgen_input.set_value('mountain', nmlgen_input_sav.get_value('mountain'))
 609 |         nmlgen_input.set_value('make_nh', nmlgen_input_sav.get_value('make_nh'))
 610 |         nmlgen_input.set_value('na_init', nmlgen_input_sav.get_value('na_init'))
 611 | 
 612 |         # Turn on nst spinup for grib
 613 |         if 'hafs' not in app:
 614 |             nstf_name = nmlgen_input_sav.get_value('nstf_name')
 615 |             if input_type == 'grib2':
 616 |                 nstf_name[1] = '1'
 617 |             else:
 618 |                 nstf_name[1] = '0'
 619 | 
 620 |         nmlgen_input.set_value('read_increment', nmlgen_input_sav.get_value('read_increment'))
 621 |         nmlgen_input.set_value('res_latlon_dynamics', nmlgen_input_sav.get_value('res_latlon_dynamics'))
 622 | 
 623 |     if input_type == 'grib2' and 'hafs' not in app:
 624 |         # Turn off nstf for grib input
 625 |         nstf_name[0] = '0'
 626 |         logger.info("input_type {} nstf_name {}".format(input_type, nstf_name))
 627 |         nmlgen_input.set_value('nstf_name', nstf_name)
 628 |     #----------------------------------------------------
 629 |     # Write out namelist groups
 630 |     #----------------------------------------------------
 631 | 
 632 |     # Path for namelist files
 633 |     srcroot = case.get_value("SRCROOT")
 634 |     namelist_xml_dir = os.path.join(srcroot, "src", "model", "FV3", "cime", "cime_config")
 635 | 
 636 |     # Create list of groups by querying xml file
 637 |     groups = []
 638 |     with open(os.path.join(namelist_xml_dir, "namelist_definition_ufsatm.xml"), 'r') as fin:
 639 |         for s in fin:
 640 |             if "<group>" in s:
 641 |                 groups.append(s.replace('<group>', '').replace('</group>', '').strip())
 642 | 
 643 |     # Remove duplicates
 644 |     groups = list(set(groups))
 645 | 
 646 |     # Keep only ufsatm related ones
 647 |     groups.remove('config') # chgres
 648 |     groups.remove('_no_group_var') # model_configure
 649 |     groups.remove('freeform') # ncep_post
 650 |     groups.remove('nampgb') # ncep_post
 651 | 
 652 |     # Sort group
 653 |     groups.sort()
 654 | 
 655 |     # Remove duplicates
 656 |     nmlgen = nmlKeepChangedOnly(nmlgen_input_def, nmlgen_input, namelist_user)
 657 | 
 658 |     ntask_atm = int(case.get_value('NTASKS_ATM'))
 659 |     if ntask_atm == 8:
 660 |         nmlgen.set_value('layout',value=[1,1])
 661 | 
 662 |     # Overwrite user_nl_ufsatm changes
 663 |     nmlgen = nmlOverwrite(namelist_user, nmlgen)
 664 | 
 665 |     # if nstf_name is None here then a default of 0,0,0,0,0 is assumed
 666 |     nstf_name = nmlgen.get_value('nstf_name')
 667 |     if "mrweather" in app:
 668 |         if not nstf_name[0] or nstf_name[0] == '0':
 669 |             ccpp = nmlgen.get_value('ccpp_suite')
 670 |             nmlgen.set_value('ccpp_suite',ccpp+'_no_nsst')
 671 | 
 672 |     # Consistency check for layout
 673 |     layout = nmlgen_input.get_value('layout')
 674 |     layout_x = int(layout[0])
 675 |     layout_y = int(layout[1])
 676 |     ntiles = int(nmlgen_input.get_value('ntiles@fv_core_nml'))
 677 |     write_tasks_per_group = int(nmlgen_model.get_value('write_tasks_per_group'))
 678 |     write_groups = int(nmlgen_model.get_value('write_groups'))
 679 | 
 680 |     ntask_atm_config = layout_x*layout_y*ntiles+write_tasks_per_group*write_groups
 681 |     if ntask_atm_config != ntask_atm:
 682 |         expect(False, ("Total number of PE need to be consistent with the model namelist options:\n"+
 683 |                        "\tTotal number of PE (ntask_atm) = {}\n"+
 684 |                        "\tDecomposition in x and y direction (layout) = {}x{}\n"+
 685 |                        "\tNumber of tile (ntiles) = {}\n"+
 686 |                        "\tNumber of I/O group (write_groups) = {}\n"+
 687 |                        "\tNumber of tasks in each I/O group (write_tasks_per_group) = {}\n").
 688 |                        format(ntask_atm,layout_x,layout_y,ntiles,write_groups,write_tasks_per_group))
 689 | 
 690 |     # Create namelist
 691 |     namelist_file = os.path.join(confdir, "atm_in")
 692 |     nmlgen.write_output_file(namelist_file, data_list_path, groups=groups, sorted_groups=False)
 693 | 
 694 | # pylint: disable=too-many-arguments,too-many-locals,too-many-branches,too-many-statements
 695 | ####################################################################################
 696 | def _create_namelist_model_configure(case, confdir, config, infile, nmlgen, namelist_user, prefix):
 697 | ####################################################################################
 698 |     """Write out the namelist for this component.
 699 | 
 700 |     Most arguments are the same as those for `NamelistGenerator`.
 701 |     The `confdir` argument is used to specify the directory  in which output files will be placed.
 702 |     """
 703 |     #----------------------------------------------------
 704 |     # Clear out old data.
 705 |     #----------------------------------------------------
 706 |     data_list_path = os.path.join(case.get_case_root(), "Buildconf", "ufsatm.input_data_list")
 707 |     if os.path.exists(data_list_path):
 708 |         logger.warning("removing file {}".format(data_list_path))
 709 |         os.remove(data_list_path)
 710 | 
 711 |     #----------------------------------------------------
 712 |     # Initialize namelist defaults
 713 |     #----------------------------------------------------
 714 |     nmlgen.init_defaults(infile, config)
 715 | 
 716 |     #----------------------------------------------------
 717 |     # Modify namelist defaults
 718 |     #----------------------------------------------------
 719 | 
 720 |     # Query previous run length, if it is warm start
 721 |     is_restart = case.get_value("CONTINUE_RUN")
 722 | 
 723 |     global nhours_fcst_pre
 724 |     if is_restart: # Warm start
 725 |         # Set previous forecast length based on restart file
 726 |         rundir = case.get_value("RUNDIR")
 727 |         rst_file = os.path.join(rundir, "RESTART", "{}coupler.res".format(prefix))
 728 |         if not os.path.isfile(rst_file):
 729 |             expect(False, "Couldn't find '"+rst_file+"'!")
 730 |         else:
 731 |             # TODO: it supports only gregorian and need to support others (no_calendar=0, thirty_day_months=1, julian=2, gregorian=3, noleap=4)
 732 |             # Parse coupler.res
 733 |             logger.debug("Using {} to determine previous forecast length ...".format(rst_file))
 734 |             with open(rst_file, 'r') as f:
 735 |                 lines = f.readlines()
 736 |                 #calendar = lines[0].split()[0]
 737 |                 date1 = datetime(*[int(i) for i in lines[1].split()[0:6]])
 738 |                 date2 = datetime(*[int(i) for i in lines[2].split()[0:6]])
 739 |                 nhours_fcst_pre = int((date2-date1).total_seconds()//3600)
 740 |     else: # Cold start
 741 |         # Set previous forecast length as zero
 742 |         nhours_fcst_pre = 0
 743 | 
 744 |     # Change start date
 745 |     run_start_date = case.get_value('RUN_STARTDATE').split('-')
 746 |     yyyy = int(run_start_date[0])
 747 |     mm = int(run_start_date[1])
 748 |     dd = int(run_start_date[2])
 749 |     nmlgen.set_value('start_year', value=yyyy)
 750 |     nmlgen.set_value('start_month', value=mm)
 751 |     nmlgen.set_value('start_day', value=dd)
 752 | 
 753 |     run_start_tod = case.get_value('START_TOD')
 754 |     hh = int(run_start_tod//3600)
 755 |     mi = int((run_start_tod-hh*3600)//60)
 756 |     ss = int(run_start_tod-hh*3600-mi*60)
 757 |     nmlgen.set_value('start_hour', value=hh)
 758 |     nmlgen.set_value('start_minute', value=mi)
 759 |     nmlgen.set_value('start_second', value=ss)
 760 | 
 761 |     # Change forecast length
 762 |     stop_option = case.get_value('STOP_OPTION')
 763 |     stop_n = int(case.get_value('STOP_N'))
 764 | 
 765 |     if 'nyears' in stop_option:
 766 |         expect(False, "Option >nyears< is not supported!")
 767 |     elif 'nmonths' in stop_option:
 768 |         expect(False, "Option >nmonths< is not supported!")
 769 |     elif 'ndays' in stop_option:
 770 |         nmlgen.set_value('nhours_fcst', stop_n*24 + nhours_fcst_pre)
 771 |     elif 'nhours' in stop_option:
 772 |         nmlgen.set_value('nhours_fcst', stop_n + nhours_fcst_pre)
 773 |     elif 'nseconds' in stop_option:
 774 |         nmlgen.set_value('nhours_fcst', stop_n/3600 + nhours_fcst_pre)
 775 |     elif 'nsteps' in stop_option:
 776 |         expect(False, "Option >nsteps< is not supported!")
 777 | 
 778 |     # Change restart interval
 779 |     rest_option = case.get_value('REST_OPTION')
 780 |     rest_n = int(case.get_value('REST_N'))
 781 | 
 782 |     if 'nyears' in rest_option:
 783 |         expect(False, "Option >nyears< is not supported!")
 784 |     elif 'nmonths' in rest_option:
 785 |         expect(False, "Option >nmonths< is not supported!")
 786 |     elif 'ndays' in rest_option:
 787 |         nmlgen.set_value('restart_interval', rest_n*24)
 788 |     elif 'nhours' in rest_option:
 789 |         nmlgen.set_value('restart_interval', rest_n)
 790 |     elif 'nseconds' in rest_option:
 791 |         nmlgen.set_value('restart_interval', rest_n/60)
 792 |     elif 'nsteps' in rest_option:
 793 |         expect(False, "Option >nsteps< is not supported!")
 794 | 
 795 |     # Query total number of PEs
 796 |     components = active_components(case)
 797 |     ntask = int(case.get_value('NTASKS_ATM'))
 798 |     if len(components) > 1:
 799 |         ntask = int(case.get_value('TOTALPES'))
 800 | 
 801 |     # Change number of used PEs if there is a mismatch
 802 |     pe_member = int(nmlgen.get_value('PE_MEMBER01'))
 803 |     if pe_member != ntask:
 804 |         nmlgen.set_value('PE_MEMBER01', ntask)
 805 | 
 806 |     # Change number of write group for 8 PEs
 807 |     if ntask == 8:
 808 |         nmlgen.set_value("write_tasks_per_group",2)
 809 | 
 810 |     # Test run specific modifications
 811 |     testcase = case.get_value("TEST")
 812 |     if testcase:
 813 |         # Change output format
 814 |         nmlgen.set_value('output_file', 'netcdf')
 815 | 
 816 |         # Change file prefixes
 817 |         nmlgen.set_value('filename_base', "{} {}".format(case.get_value('CASE')+'.ufsatm.atm.', case.get_value('CASE')+'.ufsatm.sfc.'))
 818 | 
 819 |     # Modify machine specific namelist options
 820 |     nmlgen.set_value('atmos_nthreads', case.thread_count)
 821 |     nmlgen.set_value('ncores_per_node', case.tasks_per_node)
 822 | 
 823 |     # Activate ESMF logs if it is a debug run
 824 |     debug = case.get_value("DEBUG")
 825 |     if debug:
 826 |         nmlgen.set_value('print_esmf', True)
 827 |     else:
 828 |         nmlgen.set_value('print_esmf', False)
 829 | 
 830 |     # overwrite user_nl_ufsatm changes
 831 |     nmlgen = nmlOverwrite(namelist_user, nmlgen)
 832 | 
 833 |     # remove parameters from the namelist based on the selected app
 834 |     remove_lst = [] 
 835 |     if "hafs" in app:
 836 |         remove_lst.extend(["imo", "jmo", "iau_offset", "ideflate", "nbits", "output_history", "write_dopost", "atm_coupling_interval_sec", "fhrot"])
 837 |     else:
 838 |         remove_lst.extend(["cen_lat", "cen_lon", "dlat", "dlon", "lat1", "lat2", "lon1", "lon2"])
 839 |         if "mrweather" in app:
 840 |             remove_lst.append("atm_coupling_interval_sec")
 841 |             remove_lst.append("fhrot")
 842 | 
 843 |     for var in remove_lst:
 844 |         nmlgen._namelist.delete_variable("_no_group_var", var)
 845 | 
 846 |     #----------------------------------------------------
 847 |     # Write out model.configure namelist
 848 |     #----------------------------------------------------
 849 |     model_config_file = os.path.join(confdir, "model_configure")
 850 |     nmlgen.write_nuopc_config_file(model_config_file, data_list_path)
 851 | 
 852 | # pylint: disable=too-many-arguments,too-many-locals,too-many-branches,too-many-statements
 853 | ####################################################################################
 854 | def _create_namelist_chgres(case, confdir, config, infile, nmlgen, nmlgen_def, nmlgen_input, namelist_user, input_type):
 855 | ####################################################################################
 856 |     """Write out the namelist for this component.
 857 | 
 858 |     Most arguments are the same as those for `NamelistGenerator`.
 859 |     The `confdir` argument is used to specify the directory  in which output files will be placed.
 860 |     """
 861 |     #----------------------------------------------------
 862 |     # Clear out old data.
 863 |     #----------------------------------------------------
 864 |     data_list_path = os.path.join(case.get_case_root(), "Buildconf", "ufsatm.input_data_list")
 865 | 
 866 |     #----------------------------------------------------
 867 |     # Initialize namelist defaults
 868 |     #----------------------------------------------------
 869 |     nmlgen.init_defaults(infile, config)
 870 |     nmlgen_def.init_defaults(infile, {})
 871 | 
 872 |     #----------------------------------------------------
 873 |     # Modify namelist defaults
 874 |     #----------------------------------------------------
 875 |     rundir = case.get_value("RUNDIR")
 876 |     atm_grid = case.get_value("ATM_GRID").replace('r', '')
 877 | 
 878 |     # Set grid
 879 |     nmlgen.set_value('mosaic_file_target_grid', os.path.join("INPUT",atm_grid+"_mosaic.nc"))
 880 | 
 881 |     # Set vertical layers
 882 |     levp = nmlgen_input.get_value("levp")
 883 |     if levp is None:
 884 |         expect(False, "Number of vertical layer 'levp' must be a valid number! levp = {}".format(levp))
 885 |     else:
 886 |         hyblev_file = os.path.join(rundir,"INPUT","global_hyblev.l{}.txt".format(levp))
 887 |         if not os.path.exists(hyblev_file):
 888 |             logger.warning("WARNING: {} does not exist, will attempt to download.".format(hyblev_file))
 889 |         else:
 890 |             nmlgen.set_value('vcoord_file_target_grid', os.path.join("INPUT","global_hyblev.l{}.txt".format(levp)))
 891 | 
 892 |     # Set location of fixed surface files
 893 |     nmlgen.set_value('fix_dir_target_grid', os.path.join("INPUT"))
 894 | 
 895 |     # Set cycle
 896 |     run_start_date = case.get_value('RUN_STARTDATE').split('-')
 897 |     yyyy = int(run_start_date[0])
 898 |     mm = int(run_start_date[1])
 899 |     dd = int(run_start_date[2])
 900 |     run_start_tod = case.get_value('START_TOD')
 901 |     hh = int(run_start_tod//3600)
 902 | 
 903 |     nmlgen.set_value('cycle_mon', int(mm))
 904 |     nmlgen.set_value('cycle_day', int(dd))
 905 |     nmlgen.set_value('cycle_hour', int(hh))
 906 | 
 907 |     # Input directory
 908 |     icdir = os.path.join(case.get_value("DIN_LOC_IC"),"{:04d}{:02d}".format(yyyy,mm),"{:04d}{:02d}{:02d}".format(yyyy,mm,dd))
 909 |     nmlgen.set_value('data_dir_input_grid', icdir)
 910 | 
 911 |     # Set input_type specific options
 912 |     nmlgen.set_value('input_type', input_type)
 913 |     if input_type == 'gaussian_nemsio':
 914 |         nmlgen.set_value('atm_files_input_grid', ['atm.input.ic.nemsio'])
 915 |         nmlgen.set_value('sfc_files_input_grid', ['sfc.input.ic.nemsio'])
 916 |         tracers = ['sphum','liq_wat','o3mr','ice_wat','rainwat','snowwat','graupel']
 917 |         nmlgen.set_value('tracers', tracers)
 918 |         tracers_input = ['spfh','clwmr','o3mr','icmr','rwmr','snmr','grle']
 919 |         nmlgen.set_value('tracers_input', tracers_input)
 920 |         nmlgen.set_value('convert_nst', True)
 921 |     elif input_type == 'grib2':
 922 |         nmlgen.set_value('grib2_file_input_grid','atm.input.ic.grb2')
 923 |         nmlgen.set_value('varmap_file', 'GFSphys_var_map.txt')
 924 |     elif input_type == 'gaussian_netcdf':
 925 |         nmlgen.set_value('orog_dir_target_grid', os.path.join("INPUT"))
 926 |         oro_files = []
 927 |         for tile in range(1,7):
 928 |             oro_files.append("oro_data.tile{}.nc".format(tile))
 929 |         nmlgen.set_value('orog_files_target_grid', oro_files)
 930 |         nmlgen.set_value('atm_files_input_grid', ['atm.input.ic.nc'])
 931 |         nmlgen.set_value('sfc_files_input_grid', ['sfc.input.ic.nc'])
 932 |         nmlgen.set_value('convert_atm', True)
 933 |         nmlgen.set_value('convert_sfc', True)
 934 |         nmlgen.set_value('convert_nst', True)
 935 |         tracers = ['sphum','liq_wat','o3mr','ice_wat','rainwat','snowwat','graupel']
 936 |         nmlgen.set_value('tracers', tracers)
 937 |         tracers_input = ['spfh','clwmr','o3mr','icmr','rwmr','snmr','grle']
 938 |         nmlgen.set_value('tracers_input', tracers_input)
 939 | 
 940 |     # Check/correct task count used for pre-processing
 941 |     mach = case.get_value("MACH") 
 942 |     atm_grid = case.get_value("ATM_GRID").replace('r', '')
 943 |     tasks_per_node = 12
 944 |     task_count = {"C96"  : 1*tasks_per_node, # 1 nodes
 945 |                   "C192" : 1*tasks_per_node, # 1 nodes
 946 |                   "C384" : 2*tasks_per_node, # 2 nodes
 947 |                   "C768" : 3*tasks_per_node} # 3 nodes
 948 | 
 949 |     if atm_grid in task_count.keys():
 950 |         case.set_value("tasks_per_node", str(tasks_per_node), subgroup="case.chgres")
 951 |         case.set_value("task_count", str(task_count[atm_grid]), subgroup="case.chgres")
 952 |         logger.info("CHGRES task count and tasks per node are modified! task_count = {} tasks_per_node = {}".format(task_count[atm_grid], tasks_per_node))
 953 |         case.flush()
 954 | 
 955 |     # remove namelist options that has no specialization
 956 |     nmlgen_mod = nmlKeepChangedOnly(nmlgen_def, nmlgen, namelist_user)
 957 | 
 958 |     # overwrite user_nl_ufsatm changes
 959 |     nmlgen_mod = nmlOverwrite(namelist_user, nmlgen_mod)
 960 | 
 961 |     #----------------------------------------------------
 962 |     # Write out namelist groups
 963 |     #----------------------------------------------------
 964 |     groups=['config']
 965 | 
 966 |     namelist_file = os.path.join(confdir, "config.nml")
 967 |     nmlgen_mod.write_output_file(namelist_file, data_list_path, groups=groups, sorted_groups=False)
 968 | 
 969 | # pylint: disable=too-many-arguments,too-many-locals,too-many-branches,too-many-statements
 970 | ####################################################################################
 971 | def _create_namelist_ncep_post(case, confdir, config, infile, nmlgen, nmlgen_model_configure, namelist_user):
 972 | ####################################################################################
 973 |     """Write out the namelist for this component.
 974 | 
 975 |     Most arguments are the same as those for `NamelistGenerator`.
 976 |     The `confdir` argument is used to specify the directory  in which output files will be placed.
 977 |     """
 978 |     #----------------------------------------------------
 979 |     # Clear out old data.
 980 |     #----------------------------------------------------
 981 |     data_list_path = os.path.join(case.get_case_root(), "Buildconf", "ufsatm.input_data_list")
 982 | 
 983 |     #----------------------------------------------------
 984 |     # Initialize namelist defaults
 985 |     #----------------------------------------------------
 986 |     nmlgen.init_defaults(infile, config)
 987 | 
 988 |     #----------------------------------------------------
 989 |     # Write out namelist groups
 990 |     #----------------------------------------------------
 991 |     groups=['nampgb']
 992 | 
 993 |     # Make input format for post-processing consistent with model output
 994 |     output_file = nmlgen_model_configure.get_value('output_file')
 995 |     if 'netcdf' in output_file:
 996 |         nmlgen.set_value('ioform', 'netcdf')
 997 |     elif 'nemsio' in output_file:
 998 |         nmlgen.set_value('ioform', 'binarynemsiompiio')
 999 | 
1000 |     # Query start date and time
1001 |     run_start_date = case.get_value('RUN_STARTDATE').split('-')
1002 |     yy = run_start_date[0]
1003 |     mm = run_start_date[1]
1004 |     dd = run_start_date[2]
1005 |     run_start_tod = int(case.get_value('START_TOD'))
1006 |     hh = run_start_tod//3600
1007 |     mi = (run_start_tod-hh*3600)//60
1008 |     ss = run_start_tod-hh*3600-mi*60
1009 | 
1010 |     # Overwrite user_nl_ufsatm changes
1011 |     nmlgen = nmlOverwrite(namelist_user, nmlgen)
1012 | 
1013 |     # Create namelist file for first time step / template script will update it for specific date
1014 |     namelist_file = os.path.join(confdir, "itag.tmp")
1015 |     nmlgen.write_output_file(namelist_file, data_list_path, groups=groups, sorted_groups=False)
1016 | 
1017 |     # Add header section to namelist
1018 |     with open(namelist_file, 'r+') as f:
1019 |         content = f.read()
1020 |         f.seek(0,0)
1021 |         f.write(nmlgen.get_value('filename')+"\n")
1022 |         f.write(nmlgen.get_value('ioform')+"\n")
1023 |         f.write(nmlgen.get_value('outform')+"\n")
1024 |         f.write("{}-{}-{}".format(yy,mm,dd)+"_"+"{hh:02d}:{mm:02d}:{ss:02d}".format(hh=hh,mm=mi,ss=ss)+"\n")
1025 |         f.write(nmlgen.get_value('modelname')+"\n")
1026 |         f.write(nmlgen.get_value('filenameflux')+"\n")
1027 |         f.write(content)
1028 | 
1029 |     # Check/correct task count used for post-processing
1030 |     atm_grid = case.get_value("ATM_GRID").replace('r', '')
1031 |     mach = case.get_value("MACH")
1032 | 
1033 |     # Specific fix for Stampede2
1034 |     tasks_per_node = int(case.get_value("MAX_TASKS_PER_NODE"))
1035 |     if ("C384" in atm_grid or "C768" in atm_grid) and "stampede2" in mach:
1036 |         tasks_per_node = 24
1037 |         case.set_value("tasks_per_node", str(tasks_per_node), subgroup="case.gfs_post")
1038 |         case.flush()
1039 |         logger.info("NCEP Post tasks per node is changed to {}!".format(tasks_per_node))
1040 | 
1041 |     task_count = {"C96": tasks_per_node, "C192": tasks_per_node, "C384": tasks_per_node*2, "C768": tasks_per_node*4}
1042 |     if atm_grid in task_count.keys():
1043 |         case.set_value("task_count", str(task_count[atm_grid]), subgroup="case.gfs_post")
1044 |         case.flush()
1045 |         logger.info("NCEP Post task count is changed to {}!".format(task_count[atm_grid]))
1046 | 
1047 | ###############################################################################
1048 | def buildnml(case, caseroot, compname):
1049 | ###############################################################################
1050 | 
1051 |     # Date stamp for input directory
1052 |     # TODO: might be a xmlchange option
1053 |     datestamp="20191213"
1054 | 
1055 |     # Build the component namelist
1056 |     if compname != "ufsatm":
1057 |         raise AttributeError
1058 |     srcroot = case.get_value("SRCROOT")
1059 |     rundir  = case.get_value("RUNDIR")
1060 | 
1061 |     # determine the confdir directory
1062 |     confdir = os.path.join(caseroot,"Buildconf","ufsatmconf")
1063 |     if not os.path.isdir(confdir):
1064 |         os.makedirs(confdir)
1065 | 
1066 |     # determine CaseDocs
1067 |     casedocsdir = os.path.join(caseroot,"CaseDocs")
1068 | 
1069 |     # query compset
1070 |     compset = case.get_value("COMPSET")
1071 | 
1072 |     # dictionary for app, compset/s pairs
1073 |     compset_dict = {"mrweather": ["FCST_ufsatm%v15p2_SLND_SICE_SOCN_SROF_SGLC_SWAV", \
1074 |                                   "FCST_ufsatm%v16beta_SLND_SICE_SOCN_SROF_SGLC_SWAV"], \
1075 |                     "hafs"     : ["FCST_ufsatm%v0nocp_SLND_SICE_SOCN_SROF_SGLC_SWAV"]
1076 |                    }
1077 | 
1078 |     # determine app using compset, the default value is s2s
1079 |     global app
1080 |     app = "s2s"
1081 |     for key, value in compset_dict.items():
1082 |         for item in value:
1083 |             if item in compset:
1084 |                 app = key
1085 | 
1086 |     # query used CCPP suite
1087 |     ccpp_suite = case.get_value("CCPP_SUITES")
1088 | 
1089 |     config = {}
1090 |     config['app'] = app
1091 |     config['ccpp'] = ccpp_suite
1092 |     config['hgrid'] = case.get_value("ATM_GRID")
1093 |     config['ntasks'] = str(case.get_value("ATM_NTASKS"))
1094 | 
1095 |     # path for namelist files
1096 |     namelist_xml_dir = os.path.join(srcroot, "src", "model", "FV3", "cime", "cime_config")
1097 | 
1098 |     # set namelist definition file
1099 |     definition_file = [os.path.join(namelist_xml_dir, "namelist_definition_ufsatm.xml")]
1100 | 
1101 |     # create namelist_infile using user_nl_file as input
1102 |     user_nl_file = os.path.join(caseroot, "user_nl_ufsatm")
1103 |     expect(os.path.isfile(user_nl_file),
1104 |            "Missing required user_nl_file %s " %(user_nl_file))
1105 |     infile = os.path.join(confdir, "namelist_infile")
1106 |     create_namelist_infile(case, user_nl_file, infile)
1107 |     namelist_infile = [infile]
1108 | 
1109 |     # read user modified namelist values
1110 |     namelist_user = parse(infile)
1111 | 
1112 |     #----------------------------------------------------
1113 |     # Set case start date
1114 |     #----------------------------------------------------
1115 |     is_restart =  case.get_value("CONTINUE_RUN")
1116 | 
1117 |     if is_restart: # Warm start
1118 |         # List coupler.res files
1119 |         res_files = []
1120 |         for _, _, files in os.walk(os.path.join(rundir,"RESTART")):
1121 |             for filename in files:
1122 |                 if "coupler.res" in filename:
1123 |                     res_files.append(filename)
1124 |         res_files.sort()
1125 | 
1126 |         # If we have multiple, get time stamp
1127 |         nres = len(res_files)
1128 |         if nres > 1:
1129 |             prefix = res_files[nres-2].replace("coupler.res", "")
1130 |         else:
1131 |             # Query restart file
1132 |             rst_file = os.path.join(rundir, "RESTART", "coupler.res")
1133 |             if not os.path.isfile(rst_file):
1134 |                 expect(False, "{} is missing. It is required to restart the model!".format(os.path.join(rundir,"RESTART","coupler.res")))
1135 |             else:
1136 |                 with open(rst_file, 'r') as f:
1137 |                     lines = f.readlines()
1138 |                     line = [int(x) for x in lines[2].split()[0:6]]
1139 |                     prefix = "{:04d}".format(line[0])
1140 |                     prefix = prefix + "".join("{:02d}".format(x) for x in line[1:3])
1141 |                     prefix = prefix + "." + "".join("{:02d}".format(x) for x in line[3:7])
1142 |                     prefix = prefix + "."
1143 | 
1144 |             # Copy files by adding prefix
1145 |             # Tiled files
1146 |             tile_max = 7
1147 |             if "hafs" in app:
1148 |                 # Regional case has only one tile (1)
1149 |                 tile_max = 2
1150 | 
1151 |             lst = ["fv_core.res", "fv_srf_wnd.res", "fv_tracer.res", "phy_data", "sfc_data"]
1152 |             for f in lst:
1153 |                 for tile in range(1,tile_max):
1154 |                     if "_data" in f and "hafs" in app:
1155 |                         src_file = os.path.join(rundir,"RESTART","{}.nc".format(f))
1156 |                         tgt_file = os.path.join(rundir,"RESTART","{}.nc".format(prefix + f))
1157 |                     else:
1158 |                         src_file = os.path.join(rundir,"RESTART","{}.tile{}.nc".format(f,tile))
1159 |                         tgt_file = os.path.join(rundir,"RESTART","{}.tile{}.nc".format(prefix + f,tile))
1160 |                     if not os.path.isfile(src_file):
1161 |                         expect(False, "{} is missing.".format(src_file))
1162 |                     else:
1163 |                         safe_copy(src_file, tgt_file)
1164 | 
1165 |             # Others
1166 |             lst = ["fv_core.res.nc", "coupler.res"]
1167 |             for f in lst:
1168 |                 src_file = os.path.join(rundir,"RESTART",f)
1169 |                 tgt_file = os.path.join(rundir,"RESTART",prefix + f)
1170 |                 if not os.path.isfile(src_file):
1171 |                     expect(False, "{} is missing.".format(src_file))
1172 |                 else:
1173 |                     safe_copy(src_file, tgt_file)
1174 |     else:
1175 |         prefix = ""
1176 | 
1177 |     #----------------------------------------------------
1178 |     # Query jobs
1179 |     #----------------------------------------------------
1180 | 
1181 |     env_workflow = case.get_env("workflow")
1182 |     jobs = env_workflow.get_jobs()
1183 | 
1184 |     #----------------------------------------------------
1185 |     # Set input type
1186 |     #----------------------------------------------------
1187 | 
1188 |     # Query date and time 
1189 |     yyyy, mm, dd, hh = date_yyyymmddhh(case)
1190 | 
1191 |     # Check input directory to find input_file format (same folder could have both .nemsio and .grb2)
1192 |     if "case.chgres" in jobs:
1193 |         # Query input directory
1194 |         if "hafs" in app:
1195 |             din_loc_root = case.get_value("DIN_LOC_ROOT")
1196 |             icdir = os.path.join(din_loc_root,"regional","bcond","{:04d}{:02d}{:02d}{:02d}".format(yyyy,mm,dd,hh))
1197 |         else:
1198 |             icdir = os.path.join(case.get_value("DIN_LOC_IC"),"{:04d}{:02d}".format(yyyy,mm),"{:04d}{:02d}{:02d}".format(yyyy,mm,dd))
1199 | 
1200 |         logger.info("Checking {} directory to find raw input files ...".format(icdir))
1201 |         input_dict = {}
1202 |         if os.path.exists(icdir):
1203 |             for f in os.listdir(icdir):
1204 |                 if "atm.input.ic.nemsio" in f or "sfc.input.ic.nemsio" in f:
1205 |                     if 'gaussian_nemsio' in input_dict.keys():
1206 |                         input_dict['gaussian_nemsio'].append(f)
1207 |                     else:
1208 |                         input_dict.update({'gaussian_nemsio':[f]})
1209 |                     logger.info("Found '{}' in input directory".format(f))
1210 |                 elif "atm.input.ic.grb2" in f:
1211 |                     if 'grib2' in input_dict.keys():
1212 |                         input_dict['grib2'].append(f)
1213 |                     else:
1214 |                         input_dict.update({'grib2':[f]})
1215 |                     logger.info("Found '{}' in input directory".format(f))
1216 |                 elif "atm.input.ic.nc" in f or "sfc.input.ic.nc" in f:
1217 |                     if 'gaussian_netcdf' in input_dict.keys():
1218 |                         input_dict['gaussian_netcdf'].append(f)
1219 |                     else:
1220 |                         input_dict.update({'gaussian_netcdf':[f]})
1221 |                     logger.info("Found '{}' in input directory".format(f))
1222 | 
1223 |         # Remove duplicates
1224 |         input_type_lst = list(set(input_dict.keys()))
1225 | 
1226 |         # Check user_nl_ufsatm for input_type and force buildnml to use it
1227 |         input_type_user = namelist_user.get_value('input_type')[0]
1228 |         if input_type_user:
1229 |             input_type_lst = list([input_type_user.strip('\"').strip('\'')])
1230 | 
1231 |         # If input_type is empty throw error
1232 |         if not input_type_lst:
1233 |             logger.info("No input file/s found locally! {}".format(icdir))
1234 |             logger.info("Please download raw initial condition and rename the file/s using following convention:")
1235 |             logger.info("\t NEMSIO: atm.input.ic.nemsio and sfc.input.ic.nemsio")
1236 |             logger.info("\t GRIB2 : atm.input.ic.grb2")
1237 |             logger.info("\t NetCDF: atm.input.ic.nc and sfc.input.ic.nc")
1238 |             expect(False, "Exiting ...")
1239 |         else:
1240 |             # Set grib2 as default, if we have multiple data formats such as both .grb2 and .nc
1241 |             if len(input_type_lst) > 1:
1242 |                 input_type = "grib2"
1243 |             else:
1244 |                 input_type = input_type_lst[0]
1245 | 
1246 |             logger.info("CHGRES namelist option 'input_type' is set to {}".format(input_type))
1247 | 
1248 |             # Check defined input_type exists in the dictionary
1249 |             if input_type in input_dict.keys():
1250 |                 # Check the input file matched with the input_type
1251 |                 for f in input_dict[input_type]:
1252 |                     if not os.path.exists(os.path.join(icdir,f)):
1253 |                         expect(False, "{} not found!".format(os.path.join(icdir,f)))
1254 |                     else:
1255 |                         logger.info("CHGRES will use {}".format(os.path.join(icdir,f)))
1256 |             else:
1257 |                 # If there is no file with given input_type, print information and exit
1258 |                 if "gaussian_nemsio" == input_type:
1259 |                     logger.info("Please download raw initial condition in NEMSIO format rename it as atm.input.ic.nemsio and sfc.input.ic.nemsio")
1260 |                 elif "grib2" == input_type:
1261 |                     logger.info("Please download raw initial condition in GRIB2 format and rename it as atm.input.ic.grb2")
1262 |                 elif "gaussian_netcdf" == input_type:
1263 |                     logger.info("Please download raw initial condition in NETCDF format and rename it as atm.input.ic.nc and sfc.input.ic.nc")
1264 |                 else:
1265 |                     logger.info("Namelist option input_type can be 'gaussian_nemsio', 'grib2' or 'gaussian_netcdf'.")
1266 |                 expect(False, "Exiting ...")
1267 |     else:
1268 |        input_type = None 
1269 |        logger.info("CHGRES is not the part of the workflow. There is no need to set 'input_type'!")
1270 | 
1271 |     #----------------------------------------------------
1272 |     # Namelist generator for atmosphere model (model_configure)
1273 |     #----------------------------------------------------
1274 | 
1275 |     # allow using user provided model_configure
1276 |     auto_namelist_file = os.path.join(confdir,"model_configure")
1277 |     user_namelist_file = os.path.join(caseroot,"SourceMods","src.ufsatm","model_configure")
1278 |     if os.path.isfile(user_namelist_file):
1279 |         logger.info("Using user provided model_configure file {}".format(user_namelist_file))
1280 |         if os.path.isfile(auto_namelist_file):
1281 |             os.remove(auto_namelist_file)
1282 |         safe_copy(user_namelist_file,auto_namelist_file)
1283 |         # TODO: need to implement nuopc parser to create nmlgen_model_configure from existing model_configure
1284 |         # CIME issue: https://github.com/ESMCI/cime/issues/3705
1285 |         # nmlgen_model_configure = parse_nuopc(auto_namelist_file)
1286 |     else:
1287 |         logger.info("Using auto-generated model_configure file {}".format(auto_namelist_file))
1288 | 
1289 |         # create the namelist generator object
1290 |         nmlgen_model_configure = NamelistGenerator(case, definition_file)
1291 | 
1292 |         # create namelist model_configure
1293 |         _create_namelist_model_configure(case, confdir, config, namelist_infile, nmlgen_model_configure, namelist_user, prefix)
1294 | 
1295 |     # copy namelist files to rundir
1296 |     if os.path.isdir(rundir):
1297 |         file1 = os.path.join(confdir, "model_configure")
1298 |         file2 = os.path.join(rundir, "model_configure")
1299 |         logger.debug("ufsatm configuration copy: file1 %s file2 %s " %(file1, file2))
1300 |         safe_copy(file1, file2)
1301 | 
1302 |     #----------------------------------------------------
1303 |     # Namelist generator for atmosphere model (input.nml.fv3)
1304 |     #----------------------------------------------------
1305 | 
1306 |     # allow using user provided atm_in aka input.nml
1307 |     auto_namelist_file = os.path.join(confdir,"atm_in")
1308 |     user_namelist_file = os.path.join(caseroot,"SourceMods","src.ufsatm","atm_in")
1309 |     if os.path.isfile(user_namelist_file):
1310 |         logger.info("Using user provided atm_in file {}".format(user_namelist_file))
1311 |         if os.path.isfile(auto_namelist_file):
1312 |             os.remove(auto_namelist_file)
1313 |         safe_copy(user_namelist_file,auto_namelist_file)
1314 |         nmlgen_input = parse(auto_namelist_file)
1315 |     else:
1316 |         logger.info("Using auto-generated atm_in file {}".format(auto_namelist_file))
1317 | 
1318 |         # create the namelist generator object
1319 |         nmlgen_input = NamelistGenerator(case, definition_file)
1320 | 
1321 |         # create copy of nmlgen_input to modify
1322 |         nmlgen_input_def = NamelistGenerator(case, definition_file)
1323 | 
1324 |         # create namelist input.nml.fv3
1325 |         _create_namelist_input(case, confdir, config, namelist_infile, nmlgen_model_configure, nmlgen_input, nmlgen_input_def, namelist_user, datestamp, input_type)
1326 | 
1327 |     # copy namelist files to rundir
1328 |     if os.path.isdir(rundir):
1329 |         file1 = os.path.join(confdir, "atm_in")
1330 |         file2 = os.path.join(rundir, "atm_in")
1331 |         logger.debug("ufsatm namelist copy: file1 %s file2 %s " %(file1, file2))
1332 |         safe_copy(file1, file2)
1333 | 
1334 |     # link file
1335 |     logger.info("\tLinking input namelist for ufsatm")
1336 |     if not os.path.exists(rundir):
1337 |         expect(False, "Couldn't find run direcory " + rundir)
1338 |     if "MOM6" not in compset:
1339 |         # there is no need to merge with MOM6 namelist, just link it
1340 |         symlink_force(file2, os.path.join(rundir, "input.nml"))
1341 |     else:
1342 |         symlink_force(file2, os.path.join(rundir, "input.nml.fv3"))
1343 | 
1344 |     #----------------------------------------------------
1345 |     # Copy module_configure and input.nml to CaseDocs
1346 |     #----------------------------------------------------
1347 | 
1348 |     if os.path.isdir(casedocsdir):
1349 |         file1 = os.path.join(confdir, "model_configure")
1350 |         file2 = os.path.join(casedocsdir, "model_configure")
1351 |         safe_copy(file1, file2)
1352 | 
1353 |         file1 = os.path.join(confdir, "atm_in")
1354 |         file2 = os.path.join(casedocsdir, "input.nml.fv3")
1355 |         safe_copy(file1, file2)
1356 | 
1357 |     #----------------------------------------------------
1358 |     # Copy/link input files
1359 |     #----------------------------------------------------
1360 | 
1361 |     prep_input(case, casedocsdir, datestamp, nmlgen_input, prefix, input_type)
1362 | 
1363 |     #----------------------------------------------------
1364 |     # Namelist generator for chgres
1365 |     #----------------------------------------------------
1366 | 
1367 |     if "case.chgres" in jobs and not is_restart:
1368 |         # create the namelist generator object
1369 |         nmlgen_chgres = NamelistGenerator(case, definition_file)
1370 | 
1371 |         # create copy of nmlgen_chgres to modify
1372 |         nmlgen_chgres_def = NamelistGenerator(case, definition_file)
1373 | 
1374 |         # create namelist config.nml
1375 |         _create_namelist_chgres(case, confdir, config, namelist_infile, nmlgen_chgres, nmlgen_chgres_def, nmlgen_input, namelist_user, input_type)
1376 | 
1377 |         # copy namelist to rundir
1378 |         if os.path.isdir(rundir):
1379 |             file1 = os.path.join(confdir, "config.nml")
1380 |             file2 = os.path.join(rundir, "config.nml")
1381 |             logger.debug("CHGRES configuration copy: file1 %s file2 %s " %(file1, file2))
1382 |             safe_copy(file1, file2)
1383 | 
1384 |         # copy namelist to CaseDocs
1385 |         if os.path.isdir(casedocsdir):
1386 |             file1 = os.path.join(confdir, "config.nml")
1387 |             file2 = os.path.join(casedocsdir, "config.nml")
1388 |             safe_copy(file1, file2)
1389 | 
1390 |     #----------------------------------------------------
1391 |     # Namelist generator for ncep_post
1392 |     #----------------------------------------------------
1393 | 
1394 |     if "case.gfs_post" in jobs:
1395 |         # create the namelist generator object
1396 |         nmlgen_ncep_post = NamelistGenerator(case, definition_file)
1397 | 
1398 |         # remove old configuration files
1399 |         for f in os.listdir(rundir):
1400 |             if "itag" in f:
1401 |                 logger.warning("removing file {}".format(f))
1402 |                 os.remove(os.path.join(rundir,f))
1403 | 
1404 |         # create namelist model_configure
1405 |         _create_namelist_ncep_post(case, confdir, config, namelist_infile, nmlgen_ncep_post, nmlgen_model_configure, namelist_user)
1406 | 
1407 |         # copy namelist to rundir
1408 |         if os.path.isdir(rundir):
1409 |             file1 = os.path.join(confdir, "itag.tmp")
1410 |             file2 = os.path.join(rundir, "itag.tmp")
1411 |             logger.debug("NCEP_POST configuration copy: file1 %s file2 %s " %(file1, file2))
1412 |             safe_copy(file1, file2)
1413 | 
1414 |         # copy namelist to CaseDocs
1415 |         if os.path.isdir(casedocsdir):
1416 |             file1 = os.path.join(confdir, "itag.tmp")
1417 |             file2 = os.path.join(casedocsdir, "itag.tmp")
1418 |             safe_copy(file1, file2)
1419 | 
1420 |     return
1421 | 
1422 | ###############################################################################
1423 | def _main_func():
1424 | 
1425 |     caseroot = parse_input(sys.argv)
1426 |     with Case(caseroot) as case:
1427 |         buildnml(case, caseroot, "ufsatm")
1428 | 
1429 | if __name__ == "__main__":
1430 |     _main_func()
1431 | 


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