├── .gitignore ├── 1-build ├── build_data.m └── data_filename.m ├── 2-preprocess ├── bipolarRefSimulation.m ├── commonAvgRef.m ├── diagnostics_car.m ├── diagnostics_filter.m ├── lsfilter.m ├── prepdata_filename.m └── preprocess_data.m ├── 3-infer ├── compute_correlation_scale.m ├── infer_nets.m ├── infer_network_correlation_analytic.m ├── nets_filename.m └── network_temporal_vote.m ├── 4-track ├── cpm.m ├── mmm.m ├── participation_to_struct.m ├── track_filename.m └── track_nets.m ├── 5-analyze ├── analyze_dpp.m ├── analyze_nets.m ├── color_connectivity_community.m ├── color_electrode_map.m ├── community_stats.m ├── confidence_interval_boostrap.m ├── filter_small_communities.m ├── imagescwithpcolor.m ├── plot_density.m ├── plot_electrodes.m ├── plot_startend_lines.m └── setup_fig.m ├── README.md ├── dynanets_defaults.m ├── dynanets_defaults_local_example.m ├── main_dynanets.m ├── method2str.m ├── rgb.m ├── simulation ├── 7-node-example │ ├── plot_7_node_graph.m │ ├── plot_7_node_graph_for_all_tracking_methods.m │ ├── run_7_node_graph.m │ ├── run_7_node_graph_MMM_parameter_variation.m │ ├── run_and_plot_CPM.m │ └── run_and_plot_MMM.m ├── 9-node-example │ └── run_9_node_graph.m ├── Figure_Compare_Tracking_Measures.m ├── Figure_Sim_Examples.m ├── compare_true_recruitment_with_communities.m ├── dynanets_sim_all.m ├── dynanets_sim_individual.m ├── flat_sq_grid_coord.m ├── init_ar_activity.m ├── make_grp_activity.m ├── make_pink_noise_dynanets.m ├── participation_sort_sim.m ├── population_result_sims.m ├── run_simulations.m ├── sim_contract.m ├── sim_expand.m ├── sim_merge.m ├── sim_null.m └── sim_split.m └── win_to_time.m /.gitignore: -------------------------------------------------------------------------------- 1 | *~ 2 | *.asv 3 | .DS_Store 4 | dynanets_defaults_local.m 5 | -------------------------------------------------------------------------------- /1-build/build_data.m: 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