├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── R ├── AIC.scampr.R ├── BIC.scampr.R ├── basis.search.R ├── basis.search.pa.R ├── basis.search.po.R ├── basis.search.with.cv.R ├── bound.R ├── candidate.bfs.R ├── estimate.correlation.range.R ├── flora-data.R ├── get.TMB.data.input.R ├── get.bf.matrix.R ├── get.design.matrix.R ├── get.offset.R ├── getCall.scampr.R ├── gorillas-data.R ├── image.scampr.R ├── kfunc.R ├── kfunc_envelopes.R ├── logLik.scampr.R ├── make.objective.function.R ├── make.scampr.data.R ├── make.spatial.folds.R ├── plot.scampr.R ├── plot_basis.R ├── plot_field.R ├── plot_search.R ├── predict.scampr.R ├── print.scampr.R ├── prune_simple_basis.R ├── residuals.scampr.R ├── roxygentags.R ├── scampr.R ├── sim_PO_PA_data.R ├── simple_basis.R ├── simulate.scampr.R ├── spatial.kfold.cv.R ├── spatial.kfold.cv_parallel.R ├── summary.scampr.R ├── update.starting.parameters.R ├── utilities.R ├── vcov.scampr.R ├── vec2im.R └── vec2mat.R ├── README.md ├── data ├── flora.rda └── gorillas.rda ├── man ├── AIC.scampr.Rd ├── BIC.scampr.Rd ├── ROxygenTags.Rd ├── basis.search.Rd ├── basis.search.pa.Rd ├── basis.search.po.Rd ├── bound.Rd ├── estimate.correlation.range.Rd ├── flora.Rd ├── get.TMB.data.input.Rd ├── get.bf.matrix.Rd ├── get.design.matrix.Rd ├── get.offset.Rd ├── getCall.scampr.Rd ├── gorillas.Rd ├── image.scampr.Rd ├── kfunc.Rd ├── kfunc_envelopes.Rd ├── logLik.scampr.Rd ├── make.objective.function.Rd ├── make.spatial.folds.Rd ├── plot.scampr.Rd ├── plot_basis.Rd ├── plot_search.Rd ├── predict.scampr.Rd ├── print.scampr.Rd ├── prune_simple_basis.Rd ├── residuals.scampr.Rd ├── scampr.Rd ├── simple_basis.Rd ├── simulate.scampr.Rd ├── summary.scampr.Rd ├── update.starting.parameters.Rd ├── vcov.scampr.Rd ├── vec2im.Rd └── vec2mat.Rd ├── scampr.Rproj ├── src ├── .gitignore ├── Makevars ├── init.h ├── scampr.cpp ├── scampr_binom_cloglog.h └── scampr_ppm.h └── tests ├── testthat.R └── testthat ├── test-get.TMB.data.R ├── test-pa.R ├── test-po.R ├── test-popa.R ├── test-simple_basis.R └── test-simulate.R /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElliotDovers/scampr/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElliotDovers/scampr/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElliotDovers/scampr/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | YEAR: 2020 2 | COPYRIGHT HOLDER: Dovers 3 | 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