├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── doc └── example │ └── example.py ├── pconsc4 ├── __init__.py ├── create_model.py ├── parsing │ ├── __init__.py │ ├── _load_data.pyx │ └── _mi_info.pyx ├── run.py └── utils.py ├── requirements.txt ├── setup.py └── tests ├── data ├── large.a3m └── small.a3m └── test_pconsc4.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/README.md -------------------------------------------------------------------------------- /doc/example/example.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/doc/example/example.py -------------------------------------------------------------------------------- /pconsc4/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/pconsc4/__init__.py -------------------------------------------------------------------------------- /pconsc4/create_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/pconsc4/create_model.py -------------------------------------------------------------------------------- /pconsc4/parsing/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pconsc4/parsing/_load_data.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/pconsc4/parsing/_load_data.pyx -------------------------------------------------------------------------------- /pconsc4/parsing/_mi_info.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/pconsc4/parsing/_mi_info.pyx -------------------------------------------------------------------------------- /pconsc4/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/pconsc4/run.py -------------------------------------------------------------------------------- /pconsc4/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/pconsc4/utils.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/setup.py -------------------------------------------------------------------------------- /tests/data/large.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/tests/data/large.a3m -------------------------------------------------------------------------------- /tests/data/small.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/tests/data/small.a3m -------------------------------------------------------------------------------- /tests/test_pconsc4.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElofssonLab/PconsC4/HEAD/tests/test_pconsc4.py --------------------------------------------------------------------------------