├── .dummy_imports ├── README.txt ├── dolfin │ └── __init__.py ├── mpi4py │ └── __init__.py ├── numpy │ └── __init__.py ├── petsc4py │ └── __init__.py └── ufl │ └── __init__.py ├── .gitignore ├── .gitlab-ci.yml ├── LICENSE.txt ├── README.txt ├── demos ├── .gitignore ├── ellipsoid │ └── land_ellipsoid.py ├── pipe_flow │ └── pipe_flow.py ├── square_elongation │ └── square_elongation.py └── unloading │ └── unloading.py ├── doc ├── .gitignore ├── Makefile ├── build │ ├── html │ │ ├── .buildinfo │ │ ├── _images │ │ │ ├── ellipsoid-mesh.png │ │ │ ├── ellipsoid.png │ │ │ ├── fm-flow.png │ │ │ ├── fm-fluids_tree.png │ │ │ ├── fm-problem_tree.png │ │ │ ├── fm-solids_tree.png │ │ │ ├── fm-solver_tree.png │ │ │ ├── lshape-original_mesh.png │ │ │ ├── lshape-reloaded_soln.png │ │ │ ├── lshape-unloaded_soln.png │ │ │ ├── pipe_flow-mesh.png │ │ │ ├── pipe_flow-soln.png │ │ │ ├── square-free_body_diagram.png │ │ │ └── square-soln.png │ │ ├── _sources │ │ │ ├── chapters │ │ │ │ ├── api.rst.txt │ │ │ │ ├── architecture.rst.txt │ │ │ │ ├── demos-all.rst.txt │ │ │ │ ├── introduction.rst.txt │ │ │ │ └── mathformulation.rst.txt │ │ │ └── index.rst.txt │ │ ├── _static │ │ │ ├── ajax-loader.gif │ │ │ ├── alabaster.css │ │ │ ├── basic.css │ │ │ ├── comment-bright.png │ │ │ ├── comment-close.png │ │ │ ├── comment.png │ │ │ ├── custom.css │ │ │ ├── doctools.js │ │ │ ├── down-pressed.png │ │ │ ├── down.png │ │ │ ├── figures │ │ │ │ ├── ellipsoid-mesh.png │ │ │ │ ├── ellipsoid.png │ │ │ │ ├── fm-flow.png │ │ │ │ ├── fm-fluids_tree.png │ │ │ │ ├── fm-problem_tree.png │ │ │ │ ├── fm-solids_tree.png │ │ │ │ ├── fm-solver_tree.png │ │ │ │ ├── lshape-original_mesh.png │ │ │ │ ├── lshape-reloaded_soln.png │ │ │ │ ├── lshape-unloaded_soln.png │ │ │ │ ├── pipe_flow-mesh.png │ │ │ │ ├── pipe_flow-soln.png │ │ │ │ ├── square-free_body_diagram.png │ │ │ │ └── square-soln.png │ │ │ ├── file.png │ │ │ ├── jquery-3.1.0.js │ │ │ ├── jquery.js │ │ │ ├── minus.png │ │ │ ├── plus.png │ │ │ ├── pygments.css │ │ │ ├── searchtools.js │ │ │ ├── underscore-1.3.1.js │ │ │ ├── underscore.js │ │ │ ├── up-pressed.png │ │ │ ├── up.png │ │ │ └── websupport.js │ │ ├── chapters │ │ │ ├── api.html │ │ │ ├── architecture.html │ │ │ ├── demos-all.html │ │ │ ├── introduction.html │ │ │ └── mathformulation.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── objects.inv │ │ ├── py-modindex.html │ │ ├── search.html │ │ └── searchindex.js │ └── latex │ │ └── FEniCSMechanics.pdf ├── make.bat └── source │ ├── _static │ └── figures │ │ ├── ellipsoid-mesh.png │ │ ├── ellipsoid.png │ │ ├── fm-flow.png │ │ ├── fm-fluids_tree.png │ │ ├── fm-problem_tree.png │ │ ├── fm-solids_tree.png │ │ ├── fm-solver_tree.png │ │ ├── lshape-original_mesh.png │ │ ├── lshape-reloaded_soln.png │ │ ├── lshape-unloaded_soln.png │ │ ├── pipe_flow-mesh.png │ │ ├── pipe_flow-soln.png │ │ ├── square-free_body_diagram.png │ │ └── square-soln.png │ ├── articles.bib │ ├── chapters │ ├── api.rst │ ├── architecture.rst │ ├── demos-all.rst │ ├── demos │ │ ├── custom-doc.txt │ │ ├── ellipsoid-doc.txt │ │ ├── pipe_flow-doc.txt │ │ ├── square-doc.txt │ │ └── unloading-doc.txt │ ├── introduction.rst │ └── mathformulation.rst │ ├── conf.py │ └── index.rst ├── fenicsmechanics ├── __CONSTANTS__.py ├── __init__.py ├── basemechanics.py ├── dolfincompat.py ├── exceptions.py ├── fluidmechanics.py ├── fmdecorators.py ├── materials │ ├── __init__.py │ ├── fiberutils.py │ ├── fluids.py │ └── solid_materials.py ├── mechanicsproblem.py ├── mechanicssolver.py ├── solidmechanics.py └── utils.py ├── meshfiles ├── beam │ └── beam-mesh-1000.h5 ├── cylinder │ ├── cylinder-boundaries.xml.gz │ ├── cylinder-mesh.h5 │ ├── cylinder-mesh.xml.gz │ ├── extruded_annulus_0.9cm_1cm_10cm.xml │ └── generate_cylinder.py ├── ellipsoid │ └── ellipsoid-mesh-1000um.h5 ├── lshape │ ├── generate_mesh.py │ ├── generate_mesh_functions.py │ ├── lshape-boundaries-fine.xml.gz │ ├── lshape-boundaries.xml.gz │ ├── lshape-mesh-fine.xml.gz │ └── lshape-mesh.xml.gz └── unit_domain │ ├── generate_unit_domain_mesh_files.py │ ├── unit_domain-20x20.h5 │ ├── unit_domain-boundaries-100x100.xml.gz │ ├── unit_domain-boundaries-12x12.h5 │ ├── unit_domain-boundaries-12x12.xml.gz │ ├── unit_domain-boundaries-12x12x12.h5 │ ├── unit_domain-boundaries-12x12x12.xml.gz │ ├── unit_domain-boundaries-20x20.h5 │ ├── unit_domain-boundaries-20x20.xml.gz │ ├── unit_domain-boundaries-20x20x20.h5 │ ├── unit_domain-boundaries-20x20x20.xml.gz │ ├── unit_domain-boundaries-24x16x16.h5 │ ├── unit_domain-boundaries-24x16x16.xml.gz │ ├── unit_domain-boundaries-2x2.xml.gz │ ├── unit_domain-boundaries-50x50.xml.gz │ ├── unit_domain-defm_mesh-comp_lin_elastic-12x12.h5 │ ├── unit_domain-defm_mesh-comp_lin_elastic-12x12.xml.gz │ ├── unit_domain-defm_mesh-comp_lin_elastic-12x12x12.xml.gz │ ├── unit_domain-defm_mesh-comp_neo_hookean-12x12.xml.gz │ ├── unit_domain-defm_mesh-comp_neo_hookean-12x12x12.xml.gz │ ├── unit_domain-defm_mesh-incomp_lin_elastic-12x12.xml.gz │ ├── unit_domain-defm_mesh-incomp_lin_elastic-12x12x12.h5 │ ├── unit_domain-defm_mesh-incomp_lin_elastic-12x12x12.xml.gz │ ├── unit_domain-defm_mesh-incomp_neo_hookean-12x12.xml.gz │ ├── unit_domain-defm_mesh-incomp_neo_hookean-12x12x12.h5 │ ├── unit_domain-defm_mesh-incomp_neo_hookean-12x12x12.xml.gz │ ├── unit_domain-mesh-100x100.xml.gz │ ├── unit_domain-mesh-12x12.h5 │ ├── unit_domain-mesh-12x12.xml.gz │ ├── unit_domain-mesh-12x12x12.h5 │ ├── unit_domain-mesh-12x12x12.xml.gz │ ├── unit_domain-mesh-20x20.h5 │ ├── unit_domain-mesh-20x20.xml.gz │ ├── unit_domain-mesh-20x20x20.h5 │ ├── unit_domain-mesh-20x20x20.xml.gz │ ├── unit_domain-mesh-24x16x16.h5 │ ├── unit_domain-mesh-24x16x16.xml.gz │ ├── unit_domain-mesh-2x2.xml.gz │ └── unit_domain-mesh-50x50.xml.gz └── test ├── .gitignore ├── conftest.py ├── manual ├── .gitignore ├── README.txt ├── land_benchmark │ ├── problem1.py │ ├── problem2.job │ └── problem2.py ├── test_anisotropic_material │ ├── fibers │ │ ├── n1.xml.gz │ │ ├── n2.xml.gz │ │ └── n_all.h5 │ └── test_anisotropic_material.py ├── test_hyperelasticity │ └── test_demo_hyperelasticity.py ├── test_incompressible_newtonian │ └── test-lshape.py ├── test_mechanics_problem │ ├── test_main.py │ └── test_unit_domain.py ├── test_time_expr_update │ ├── test_bodyforce_time_dept.py │ ├── test_dirichlet_time_dept.py │ └── test_neumann_time_dept.py └── test_unsteady │ └── test_unit_domain.py ├── pytest.ini ├── test_documented_demos.py ├── test_invalid_configs ├── test_invalid_combinations.py └── test_invalid_options.py └── test_time_expr_update.py /.dummy_imports/README.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ElsevierSoftwareX/SOFTX_2018_73/HEAD/.dummy_imports/README.txt -------------------------------------------------------------------------------- /.dummy_imports/dolfin/__init__.py: -------------------------------------------------------------------------------- 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