├── .Rbuildignore ├── .gitattributes ├── .github ├── .gitignore └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── .lintr ├── CHANGELOG ├── DESCRIPTION ├── DESCRIPTION_rdt ├── DESCRIPTION_rdtLite ├── NAMESPACE ├── NAMESPACE_rdt ├── NAMESPACE_rdtLite ├── NEWS_rdt.md ├── NEWS_rdtLite.md ├── R ├── .gitignore ├── API_core.R ├── API_rdt.R ├── API_rdtLite.R ├── Annotation_rdt.R ├── Annotation_rdtLite.R ├── DDGHash.R ├── DDGHash_rdt.R ├── DDGHash_rdtLite.R ├── DDGStatement.R ├── DDGStatement_rdt.R ├── DDGStatement_rdtLite.R ├── DataNodes.R ├── Edges.R ├── Functions.R ├── FunctionsDefined.R ├── IOTrace.R ├── Loops_rdt.R ├── OutputJSON.R ├── ProcNodes.R ├── RDataTracker_core.R ├── RDataTracker_rdt.R ├── RDataTracker_rdtLite.R ├── ReturnValues_rdt.R ├── ReturnValues_rdtLite.R ├── SourcedScripts.R └── Utilities.R ├── README.md ├── README_Build_and_Test.md ├── README_rdt.md ├── README_rdtLite.md ├── inst ├── .gitignore └── CITATION ├── man_rdt ├── prov.annotate.on.Rd ├── prov.json.Rd └── prov.run.Rd ├── man_rdtLite ├── prov.json.Rd └── prov.run.Rd ├── scriptTests ├── .gitignore ├── AnnotateOnOff │ ├── .gitignore │ ├── AnnotateOnOff.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── AssignOperators │ ├── .gitignore │ ├── AssignOperators.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── CalculateSqrt │ ├── .gitignore │ ├── CalculateSqrt.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── Connection │ ├── .gitignore │ ├── Connection.R │ ├── foo.zip │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── ControlConstruct │ ├── .gitignore │ ├── ControlConstruct.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── DDGStatement │ ├── .gitignore │ ├── DDGStatement.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── DailySolarRadiation │ ├── .gitignore │ ├── DailySolarRadiation.R │ ├── met-daily.csv │ ├── par-cal.csv │ ├── par-gf.csv │ ├── par-qc.csv │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── DataFunction │ ├── DataFunction.R │ ├── rdt │ │ ├── .gitignore │ │ ├── data │ │ │ └── pets.csv │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── data │ │ └── pets.csv │ │ ├── expected_prov.json │ │ └── expected_test.out ├── DataType │ ├── .gitignore │ ├── DataType.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── DollarOperator │ ├── DollarOperator.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── Empty │ ├── .gitignore │ ├── Empty.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── FileNodes │ ├── .gitignore │ ├── FileNodes.R │ ├── ab.zip │ ├── foo.txt │ ├── land_water.tif │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ ├── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── test.dat ├── FunctionAnnotation │ ├── .gitignore │ ├── FunctionAnnotation.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── FunctionNonlocals │ ├── .gitignore │ ├── FunctionNonlocals.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── FunctionOrigin │ ├── .gitignore │ ├── FunctionOrigin.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── HFDatasetPreview │ ├── .gitignore │ ├── HFDatasetPreview.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── HigherOrderFunc │ ├── .gitignore │ ├── HigherOrderFunc.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── NoDetails │ ├── .gitignore │ ├── NoDetails.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── NoDevOff │ ├── .gitignore │ ├── NoDevOff.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── OddParameter │ ├── .gitignore │ ├── OddParameter.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── Plot1 │ ├── .gitignore │ ├── Plot1.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── Plot2 │ ├── .gitignore │ ├── Plot2.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── Plot3 │ ├── .gitignore │ ├── Plot3.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── ProvJson │ ├── .gitignore │ ├── ProvJson.r │ ├── cases │ │ ├── empty.json │ │ ├── fail1.json │ │ └── pass1.json │ ├── complianceTest.r │ └── schema.json ├── RMarkdown │ ├── .gitignore │ ├── RMarkdown.Rmd │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── Return │ ├── .gitignore │ ├── Return.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── S4Object │ ├── .gitignore │ ├── S4Object.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── Scope │ ├── .gitignore │ ├── Scope.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── SourceFunc │ ├── .gitignore │ ├── SourceFunc.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ ├── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ ├── source1.r │ ├── source2.r │ ├── source3.r │ └── source4.r ├── Warning │ ├── .gitignore │ ├── Warning.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── basic │ ├── .gitignore │ ├── basic.R │ ├── data │ │ └── x.csv │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── console │ ├── .gitignore │ ├── console.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── consoleTest-post.r ├── consoleTest-pre.r ├── ddgDeepNesting │ ├── .gitignore │ ├── ddgDeepNesting.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── fromEnv │ ├── .gitignore │ ├── fromEnv.R │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtLite │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out ├── rdtOnly │ ├── .gitignore │ ├── rdt │ │ ├── .gitignore │ │ ├── expected_prov.json │ │ └── expected_test.out │ └── rdtOnly.R └── sourceTest.r ├── sync-repos.sh ├── tests.xml ├── tests ├── test-all-rdt.R ├── test-all-rdtLite.R └── testthat │ ├── .gitignore │ ├── testAPI.R │ ├── testDDGStatement.R │ ├── testDataNodes.R │ ├── testFunctionsDefined.R │ ├── testOutputJson.R │ ├── testOutputJson │ ├── cases │ │ ├── agent.json │ │ ├── data_null.csv │ │ ├── edges_1.csv │ │ ├── edges_3.csv │ │ ├── edges_null.csv │ │ ├── func_1.csv │ │ ├── func_3.csv │ │ ├── lib_gen.csv │ │ ├── lib_min1.csv │ │ ├── lib_min2.csv │ │ ├── proc_1.csv │ │ ├── proc_3.csv │ │ └── proc_null.csv │ └── expected │ │ ├── collection.json │ │ ├── data2proc_1.json │ │ ├── data2proc_3.json │ │ ├── data_1.json │ │ ├── data_3.json │ │ ├── func2proc_1.json │ │ ├── func2proc_3.json │ │ ├── func_1.json │ │ ├── func_3.json │ │ ├── lib2func_1.json │ │ ├── lib2func_3.json │ │ ├── lib_gen.json │ │ ├── lib_min1.json │ │ ├── lib_min2.json │ │ ├── prefix.json │ │ ├── proc2data_1.json │ │ ├── proc2data_3.json │ │ ├── proc2proc_1.json │ │ ├── proc2proc_3.json │ │ ├── proc_1.json │ │ 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