├── README.md ├── appendix.pdf ├── configs ├── .DS_Store ├── __init__.py ├── lits_seg_3d_config.py ├── lits_seg_3d_eval_config.py ├── luna_ae_3d_config.py ├── luna_byol_3d_config.py ├── luna_jigsaw_3d_config.py ├── luna_mg_3d_config.py ├── luna_ncc_3d_config.py ├── luna_ncc_3d_eval_config.py ├── luna_ncs_3d_config.py ├── luna_ncs_3d_eval_config.py ├── luna_pcrl_3d_config.py ├── luna_rkb_config.py ├── luna_rkb_plus_config.py ├── luna_rot_3d_config.py ├── luna_rpl_3d_config.py ├── luna_simclr_3d_config.py ├── msd_liver_seg_3d_config.py └── msd_liver_seg_3d_eval_config.py ├── configs_2d ├── drive_seg_2d_config.py ├── drive_seg_2d_eval_config.py ├── eyepacs_byol_2d_config.py ├── eyepacs_cls_2d_config.py ├── eyepacs_cls_2d_eval_config.py ├── eyepacs_jigsaw_2d_config.py ├── eyepacs_mg_2d_config.py ├── eyepacs_pcrl_2d_config.py ├── eyepacs_rot_2d_config.py ├── eyepacs_rpl_2d_config.py └── eyepacs_simclr_2d_config.py ├── datasets_2D ├── CL │ ├── __init__.py │ ├── base_CL_pretask.py │ └── eyepacs_CL_pretask.py ├── Classification │ ├── __init__.py │ ├── base_classification.py │ └── eyepacs_classification.py ├── Jigsaw │ ├── __init__.py │ ├── base_jigsaw_pretask.py │ ├── eyepacs_jigsaw_pretask.py │ └── permutations_hamming_max_100.npy ├── MG │ ├── __init__.py │ ├── base_mg_pretask.py │ ├── eyepacs_ae_pretask.py │ ├── eyepacs_mg_pretask.py │ └── eyepacs_pcrl_pretask.py ├── PTP │ ├── __init__.py │ ├── base_ptp_pretask.py │ ├── eyepacs_rot_pretask.py │ └── eyepacs_rpl_pretask.py ├── Seg │ ├── __init__.py │ ├── base_segmentation.py │ └── drive_segmentation.py ├── __init__.py └── paths.py ├── datasets_3D ├── .DS_Store ├── AE │ ├── __init__.py │ ├── base_ae_pretask.py │ └── luna_ae_pretask.py ├── CL │ ├── __init__.py │ ├── base_CL_pretask.py │ └── luna_CL_pretask.py ├── Classification │ ├── __init__.py │ ├── base_classification.py │ └── luna_classification.py ├── MG │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-36.pyc │ │ ├── base_mg_pretask.cpython-36.pyc │ │ └── luna_mg_pretask.cpython-36.pyc │ ├── base_mg_pretask.py │ └── luna_mg_pretask.py ├── PCRL │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-36.pyc │ │ ├── base_pcrl_pretask.cpython-36.pyc │ │ └── luna_pcrl_pretask.cpython-36.pyc │ ├── base_pcrl_pretask.py │ └── luna_pcrl_pretask.py ├── PTP │ ├── __init__.py │ ├── base_ptp_pretask.py │ ├── luna_rot_pretask.py │ └── luna_rpl_pretask.py ├── Rubik_cube │ ├── .DS_Store │ ├── __init__.py │ ├── base_rkb_pretask.py │ ├── luna_jigsaw_pretask.py │ ├── luna_rkb_plus_pretask.py │ ├── luna_rkb_pretask.py │ └── permutaions │ │ ├── .DS_Store │ │ ├── permutations_hamming_max_100.npy │ │ └── permutations_hamming_max_1000.npy ├── Seg │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-36.pyc │ │ ├── base_seg.cpython-36.pyc │ │ └── luna_seg.cpython-36.pyc │ ├── base_seg.py │ ├── lits_seg.py │ ├── luna_seg.py │ └── msd_liver_seg.py ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-36.pyc │ └── paths.cpython-36.pyc └── paths.py ├── models ├── .DS_Store ├── BYOL.py ├── PCRL.py ├── __init__.py ├── __pycache__ │ ├── BYOL_v2.cpython-36.pyc │ ├── __init__.cpython-36.pyc │ └── pixel_BYOL.cpython-36.pyc └── pixel_BYOL.py ├── networks ├── MyPCLR3d.py ├── MyPCRL2d.py ├── PCRL.py ├── PCRL3d.py ├── __init__.py ├── __pycache__ │ ├── PCRL.cpython-36.pyc │ ├── __init__.cpython-36.pyc │ ├── unet.cpython-36.pyc │ └── unet3d.cpython-36.pyc ├── unet.py └── unet3d.py ├── pre_processing ├── .DS_Store ├── dataaugmentation │ ├── ImageAugmentation.py │ ├── __init__.py │ └── images_masks_3dtransforms.py ├── lits_data.py ├── luna_infinite_generator_3D.py ├── luna_node_extraction.py ├── luna_pcrl_generator.py ├── luna_subset.py ├── ncs_data.py └── preprocess_luna_ssm.py ├── testers ├── __init__.py ├── base_tester.py ├── classification2d_tester.py ├── classification_tester.py ├── mg_tester.py ├── seg2d_tester.py ├── seg3d_ROI_tester.py └── seg3d_tester.py ├── trainers ├── .DS_Store ├── __init__.py ├── base_trainer.py ├── byol_trainer.py ├── classification2d_trainer.py ├── classification_trainer.py ├── jigsaw_trainer.py ├── mg_trainer.py ├── mypcrl3d_trainer.py ├── pcrl3d_trainer.py ├── pcrl_trainer.py ├── rkb_plus_trainer.py ├── rkb_trainer.py ├── seg2d_trainer.py ├── seg3d_ROI_trainer.py ├── seg3d_mclasses_trainer.py ├── seg3d_trainer.py ├── simclr_trainer.py ├── ssm_rot_trainer.py └── ssm_rpl_trainer.py └── utils ├── __init__.py ├── __pycache__ ├── __init__.cpython-36.pyc ├── losses.cpython-36.pyc ├── recorder.cpython-36.pyc └── tools.cpython-36.pyc ├── dice_loss.py ├── losses.py ├── metrics.py ├── recorder.py └── tools.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/README.md -------------------------------------------------------------------------------- /appendix.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/appendix.pdf -------------------------------------------------------------------------------- /configs/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/.DS_Store -------------------------------------------------------------------------------- /configs/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | 3 | -------------------------------------------------------------------------------- /configs/lits_seg_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/lits_seg_3d_config.py -------------------------------------------------------------------------------- /configs/lits_seg_3d_eval_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/lits_seg_3d_eval_config.py -------------------------------------------------------------------------------- /configs/luna_ae_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_ae_3d_config.py -------------------------------------------------------------------------------- /configs/luna_byol_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_byol_3d_config.py -------------------------------------------------------------------------------- /configs/luna_jigsaw_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_jigsaw_3d_config.py -------------------------------------------------------------------------------- /configs/luna_mg_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_mg_3d_config.py -------------------------------------------------------------------------------- /configs/luna_ncc_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_ncc_3d_config.py -------------------------------------------------------------------------------- /configs/luna_ncc_3d_eval_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_ncc_3d_eval_config.py -------------------------------------------------------------------------------- /configs/luna_ncs_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_ncs_3d_config.py -------------------------------------------------------------------------------- /configs/luna_ncs_3d_eval_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_ncs_3d_eval_config.py -------------------------------------------------------------------------------- /configs/luna_pcrl_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_pcrl_3d_config.py -------------------------------------------------------------------------------- /configs/luna_rkb_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_rkb_config.py -------------------------------------------------------------------------------- /configs/luna_rkb_plus_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_rkb_plus_config.py -------------------------------------------------------------------------------- /configs/luna_rot_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_rot_3d_config.py -------------------------------------------------------------------------------- /configs/luna_rpl_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_rpl_3d_config.py -------------------------------------------------------------------------------- /configs/luna_simclr_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/luna_simclr_3d_config.py -------------------------------------------------------------------------------- /configs/msd_liver_seg_3d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/msd_liver_seg_3d_config.py -------------------------------------------------------------------------------- /configs/msd_liver_seg_3d_eval_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs/msd_liver_seg_3d_eval_config.py -------------------------------------------------------------------------------- /configs_2d/drive_seg_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/drive_seg_2d_config.py -------------------------------------------------------------------------------- /configs_2d/drive_seg_2d_eval_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/drive_seg_2d_eval_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_byol_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_byol_2d_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_cls_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_cls_2d_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_cls_2d_eval_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_cls_2d_eval_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_jigsaw_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_jigsaw_2d_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_mg_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_mg_2d_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_pcrl_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_pcrl_2d_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_rot_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_rot_2d_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_rpl_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_rpl_2d_config.py -------------------------------------------------------------------------------- /configs_2d/eyepacs_simclr_2d_config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/configs_2d/eyepacs_simclr_2d_config.py -------------------------------------------------------------------------------- /datasets_2D/CL/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/CL/__init__.py -------------------------------------------------------------------------------- /datasets_2D/CL/base_CL_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/CL/base_CL_pretask.py -------------------------------------------------------------------------------- /datasets_2D/CL/eyepacs_CL_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/CL/eyepacs_CL_pretask.py -------------------------------------------------------------------------------- /datasets_2D/Classification/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Classification/__init__.py -------------------------------------------------------------------------------- /datasets_2D/Classification/base_classification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Classification/base_classification.py -------------------------------------------------------------------------------- /datasets_2D/Classification/eyepacs_classification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Classification/eyepacs_classification.py -------------------------------------------------------------------------------- /datasets_2D/Jigsaw/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Jigsaw/__init__.py -------------------------------------------------------------------------------- /datasets_2D/Jigsaw/base_jigsaw_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Jigsaw/base_jigsaw_pretask.py -------------------------------------------------------------------------------- /datasets_2D/Jigsaw/eyepacs_jigsaw_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Jigsaw/eyepacs_jigsaw_pretask.py -------------------------------------------------------------------------------- /datasets_2D/Jigsaw/permutations_hamming_max_100.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Jigsaw/permutations_hamming_max_100.npy -------------------------------------------------------------------------------- /datasets_2D/MG/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/MG/__init__.py -------------------------------------------------------------------------------- /datasets_2D/MG/base_mg_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/MG/base_mg_pretask.py -------------------------------------------------------------------------------- /datasets_2D/MG/eyepacs_ae_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/MG/eyepacs_ae_pretask.py -------------------------------------------------------------------------------- /datasets_2D/MG/eyepacs_mg_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/MG/eyepacs_mg_pretask.py -------------------------------------------------------------------------------- /datasets_2D/MG/eyepacs_pcrl_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/MG/eyepacs_pcrl_pretask.py -------------------------------------------------------------------------------- /datasets_2D/PTP/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/PTP/__init__.py -------------------------------------------------------------------------------- /datasets_2D/PTP/base_ptp_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/PTP/base_ptp_pretask.py -------------------------------------------------------------------------------- /datasets_2D/PTP/eyepacs_rot_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/PTP/eyepacs_rot_pretask.py -------------------------------------------------------------------------------- /datasets_2D/PTP/eyepacs_rpl_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/PTP/eyepacs_rpl_pretask.py -------------------------------------------------------------------------------- /datasets_2D/Seg/__init__.py: -------------------------------------------------------------------------------- 1 | from datasets_2D.Seg.drive_segmentation import SegDRIVESet 2 | 3 | -------------------------------------------------------------------------------- /datasets_2D/Seg/base_segmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Seg/base_segmentation.py -------------------------------------------------------------------------------- /datasets_2D/Seg/drive_segmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/Seg/drive_segmentation.py -------------------------------------------------------------------------------- /datasets_2D/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/__init__.py -------------------------------------------------------------------------------- /datasets_2D/paths.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_2D/paths.py -------------------------------------------------------------------------------- /datasets_3D/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/.DS_Store -------------------------------------------------------------------------------- /datasets_3D/AE/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/AE/__init__.py -------------------------------------------------------------------------------- /datasets_3D/AE/base_ae_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/AE/base_ae_pretask.py -------------------------------------------------------------------------------- /datasets_3D/AE/luna_ae_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/AE/luna_ae_pretask.py -------------------------------------------------------------------------------- /datasets_3D/CL/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/CL/__init__.py -------------------------------------------------------------------------------- /datasets_3D/CL/base_CL_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/CL/base_CL_pretask.py -------------------------------------------------------------------------------- /datasets_3D/CL/luna_CL_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/CL/luna_CL_pretask.py -------------------------------------------------------------------------------- /datasets_3D/Classification/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Classification/__init__.py -------------------------------------------------------------------------------- /datasets_3D/Classification/base_classification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Classification/base_classification.py -------------------------------------------------------------------------------- /datasets_3D/Classification/luna_classification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Classification/luna_classification.py -------------------------------------------------------------------------------- /datasets_3D/MG/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/MG/__init__.py -------------------------------------------------------------------------------- /datasets_3D/MG/__pycache__/__init__.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/MG/__pycache__/__init__.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/MG/__pycache__/base_mg_pretask.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/MG/__pycache__/base_mg_pretask.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/MG/__pycache__/luna_mg_pretask.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/MG/__pycache__/luna_mg_pretask.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/MG/base_mg_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/MG/base_mg_pretask.py -------------------------------------------------------------------------------- /datasets_3D/MG/luna_mg_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/MG/luna_mg_pretask.py -------------------------------------------------------------------------------- /datasets_3D/PCRL/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PCRL/__init__.py -------------------------------------------------------------------------------- /datasets_3D/PCRL/__pycache__/__init__.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PCRL/__pycache__/__init__.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/PCRL/__pycache__/base_pcrl_pretask.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PCRL/__pycache__/base_pcrl_pretask.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/PCRL/__pycache__/luna_pcrl_pretask.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PCRL/__pycache__/luna_pcrl_pretask.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/PCRL/base_pcrl_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PCRL/base_pcrl_pretask.py -------------------------------------------------------------------------------- /datasets_3D/PCRL/luna_pcrl_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PCRL/luna_pcrl_pretask.py -------------------------------------------------------------------------------- /datasets_3D/PTP/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PTP/__init__.py -------------------------------------------------------------------------------- /datasets_3D/PTP/base_ptp_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PTP/base_ptp_pretask.py -------------------------------------------------------------------------------- /datasets_3D/PTP/luna_rot_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PTP/luna_rot_pretask.py -------------------------------------------------------------------------------- /datasets_3D/PTP/luna_rpl_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/PTP/luna_rpl_pretask.py -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/.DS_Store -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/__init__.py -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/base_rkb_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/base_rkb_pretask.py -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/luna_jigsaw_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/luna_jigsaw_pretask.py -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/luna_rkb_plus_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/luna_rkb_plus_pretask.py -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/luna_rkb_pretask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/luna_rkb_pretask.py -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/permutaions/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/permutaions/.DS_Store -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/permutaions/permutations_hamming_max_100.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/permutaions/permutations_hamming_max_100.npy -------------------------------------------------------------------------------- /datasets_3D/Rubik_cube/permutaions/permutations_hamming_max_1000.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Rubik_cube/permutaions/permutations_hamming_max_1000.npy -------------------------------------------------------------------------------- /datasets_3D/Seg/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Seg/__init__.py -------------------------------------------------------------------------------- /datasets_3D/Seg/__pycache__/__init__.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Seg/__pycache__/__init__.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/Seg/__pycache__/base_seg.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Seg/__pycache__/base_seg.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/Seg/__pycache__/luna_seg.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Seg/__pycache__/luna_seg.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/Seg/base_seg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Seg/base_seg.py -------------------------------------------------------------------------------- /datasets_3D/Seg/lits_seg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Seg/lits_seg.py -------------------------------------------------------------------------------- /datasets_3D/Seg/luna_seg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Seg/luna_seg.py -------------------------------------------------------------------------------- /datasets_3D/Seg/msd_liver_seg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/Seg/msd_liver_seg.py -------------------------------------------------------------------------------- /datasets_3D/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/__init__.py -------------------------------------------------------------------------------- /datasets_3D/__pycache__/__init__.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/__pycache__/__init__.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/__pycache__/paths.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/__pycache__/paths.cpython-36.pyc -------------------------------------------------------------------------------- /datasets_3D/paths.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/datasets_3D/paths.py -------------------------------------------------------------------------------- /models/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/models/.DS_Store -------------------------------------------------------------------------------- /models/BYOL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/models/BYOL.py -------------------------------------------------------------------------------- /models/PCRL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/models/PCRL.py -------------------------------------------------------------------------------- /models/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/models/__init__.py -------------------------------------------------------------------------------- /models/__pycache__/BYOL_v2.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/models/__pycache__/BYOL_v2.cpython-36.pyc -------------------------------------------------------------------------------- /models/__pycache__/__init__.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/models/__pycache__/__init__.cpython-36.pyc -------------------------------------------------------------------------------- /models/__pycache__/pixel_BYOL.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/models/__pycache__/pixel_BYOL.cpython-36.pyc -------------------------------------------------------------------------------- /models/pixel_BYOL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/models/pixel_BYOL.py -------------------------------------------------------------------------------- /networks/MyPCLR3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/MyPCLR3d.py -------------------------------------------------------------------------------- /networks/MyPCRL2d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/MyPCRL2d.py -------------------------------------------------------------------------------- /networks/PCRL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/PCRL.py -------------------------------------------------------------------------------- /networks/PCRL3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/PCRL3d.py -------------------------------------------------------------------------------- /networks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/__init__.py -------------------------------------------------------------------------------- /networks/__pycache__/PCRL.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/__pycache__/PCRL.cpython-36.pyc -------------------------------------------------------------------------------- /networks/__pycache__/__init__.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/__pycache__/__init__.cpython-36.pyc -------------------------------------------------------------------------------- /networks/__pycache__/unet.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/__pycache__/unet.cpython-36.pyc -------------------------------------------------------------------------------- /networks/__pycache__/unet3d.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/__pycache__/unet3d.cpython-36.pyc -------------------------------------------------------------------------------- /networks/unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/unet.py -------------------------------------------------------------------------------- /networks/unet3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/networks/unet3d.py -------------------------------------------------------------------------------- /pre_processing/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/.DS_Store -------------------------------------------------------------------------------- /pre_processing/dataaugmentation/ImageAugmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/dataaugmentation/ImageAugmentation.py -------------------------------------------------------------------------------- /pre_processing/dataaugmentation/__init__.py: -------------------------------------------------------------------------------- 1 | #!/home/chuyan/anaconda3/envs/zcy/bin/python3.6 2 | 3 | -------------------------------------------------------------------------------- /pre_processing/dataaugmentation/images_masks_3dtransforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/dataaugmentation/images_masks_3dtransforms.py -------------------------------------------------------------------------------- /pre_processing/lits_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/lits_data.py -------------------------------------------------------------------------------- /pre_processing/luna_infinite_generator_3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/luna_infinite_generator_3D.py -------------------------------------------------------------------------------- /pre_processing/luna_node_extraction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/luna_node_extraction.py -------------------------------------------------------------------------------- /pre_processing/luna_pcrl_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/luna_pcrl_generator.py -------------------------------------------------------------------------------- /pre_processing/luna_subset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/luna_subset.py -------------------------------------------------------------------------------- /pre_processing/ncs_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/ncs_data.py -------------------------------------------------------------------------------- /pre_processing/preprocess_luna_ssm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/pre_processing/preprocess_luna_ssm.py -------------------------------------------------------------------------------- /testers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/testers/__init__.py -------------------------------------------------------------------------------- /testers/base_tester.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/testers/base_tester.py -------------------------------------------------------------------------------- /testers/classification2d_tester.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/testers/classification2d_tester.py -------------------------------------------------------------------------------- /testers/classification_tester.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/testers/classification_tester.py -------------------------------------------------------------------------------- /testers/mg_tester.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/testers/mg_tester.py -------------------------------------------------------------------------------- /testers/seg2d_tester.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/testers/seg2d_tester.py -------------------------------------------------------------------------------- /testers/seg3d_ROI_tester.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/testers/seg3d_ROI_tester.py -------------------------------------------------------------------------------- /testers/seg3d_tester.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/testers/seg3d_tester.py -------------------------------------------------------------------------------- /trainers/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/.DS_Store -------------------------------------------------------------------------------- /trainers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/__init__.py -------------------------------------------------------------------------------- /trainers/base_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/base_trainer.py -------------------------------------------------------------------------------- /trainers/byol_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/byol_trainer.py -------------------------------------------------------------------------------- /trainers/classification2d_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/classification2d_trainer.py -------------------------------------------------------------------------------- /trainers/classification_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/classification_trainer.py -------------------------------------------------------------------------------- /trainers/jigsaw_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/jigsaw_trainer.py -------------------------------------------------------------------------------- /trainers/mg_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/mg_trainer.py -------------------------------------------------------------------------------- /trainers/mypcrl3d_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/mypcrl3d_trainer.py -------------------------------------------------------------------------------- /trainers/pcrl3d_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/pcrl3d_trainer.py -------------------------------------------------------------------------------- /trainers/pcrl_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/pcrl_trainer.py -------------------------------------------------------------------------------- /trainers/rkb_plus_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/rkb_plus_trainer.py -------------------------------------------------------------------------------- /trainers/rkb_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/rkb_trainer.py -------------------------------------------------------------------------------- /trainers/seg2d_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/seg2d_trainer.py -------------------------------------------------------------------------------- /trainers/seg3d_ROI_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/seg3d_ROI_trainer.py -------------------------------------------------------------------------------- /trainers/seg3d_mclasses_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/seg3d_mclasses_trainer.py -------------------------------------------------------------------------------- /trainers/seg3d_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/seg3d_trainer.py -------------------------------------------------------------------------------- /trainers/simclr_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/simclr_trainer.py -------------------------------------------------------------------------------- /trainers/ssm_rot_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/ssm_rot_trainer.py -------------------------------------------------------------------------------- /trainers/ssm_rpl_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/trainers/ssm_rpl_trainer.py -------------------------------------------------------------------------------- /utils/__init__.py: -------------------------------------------------------------------------------- 1 | #!/home/chuyan/anaconda3/envs/zcy/bin/python3.6 2 | 3 | -------------------------------------------------------------------------------- /utils/__pycache__/__init__.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/__pycache__/__init__.cpython-36.pyc -------------------------------------------------------------------------------- /utils/__pycache__/losses.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/__pycache__/losses.cpython-36.pyc -------------------------------------------------------------------------------- /utils/__pycache__/recorder.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/__pycache__/recorder.cpython-36.pyc -------------------------------------------------------------------------------- /utils/__pycache__/tools.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/__pycache__/tools.cpython-36.pyc -------------------------------------------------------------------------------- /utils/dice_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/dice_loss.py -------------------------------------------------------------------------------- /utils/losses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/losses.py -------------------------------------------------------------------------------- /utils/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/metrics.py -------------------------------------------------------------------------------- /utils/recorder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/recorder.py -------------------------------------------------------------------------------- /utils/tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EndoluminalSurgicalVision-IMR/Medical-SSL/HEAD/utils/tools.py --------------------------------------------------------------------------------