├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── tests.yml ├── .gitignore ├── .lintr ├── 2018-08-AddingAnExposedState ├── README.md ├── model.R └── module-fx.R ├── 2018-08-ObservedNetworkData ├── README.md ├── model.R └── module-fx.R ├── 2018-08-SIwithVitalDynamics ├── README.md ├── model.R └── module-fx.R ├── 2018-08-TestAndTreatIntervention ├── README.md ├── model.R └── module-fx.R ├── 2018-09-CompetingStrains ├── README.md ├── model.R └── module-fx.R ├── 2018-09-SocialDiffusion ├── README.md ├── coefs.png ├── model.R └── module-fx.R ├── 2018-10-SEIRwithAONVax ├── README.md ├── model.R └── module-fx.R ├── 2018-11-Syphilis ├── README.md ├── Syphilis FlowChart.jpg ├── model.R └── module-fx.R ├── 2018-12-SEIRSwithLeakyVax ├── README.md ├── model.R └── module-fx.R ├── 2019-03-HIV ├── HIV Model Diagram.pptx ├── HIV-Model-Diagram.PNG ├── README.md ├── model.R └── module-fx.R ├── 2021-10-CostEffectivenessAnalysis ├── README.md ├── model.R └── module-fx.R ├── 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