├── .coveragerc ├── .github └── workflows │ └── python-publish.yml ├── .gitignore ├── .landscape.yaml ├── .travis.yml ├── LICENSE ├── MANIFEST.in ├── README.md ├── ci ├── .travis_install.sh └── .travis_test.sh ├── data ├── GAMETES_Epistasis_2-Way_20atts_0.4H_EDM-1_1.tsv.gz └── GAMETES_Epistasis_2-Way_continuous_endpoint_a_20s_1600her_0.4__maf_0.2_EDM-2_01.tsv.gz ├── images └── mdr-logo.jpg ├── mdr ├── __init__.py ├── _version.py ├── continuous_mdr.py ├── mdr.py ├── mdr_ensemble.py └── utils │ ├── __init__.py │ └── utils.py ├── setup.py └── tests.py /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/.coveragerc -------------------------------------------------------------------------------- /.github/workflows/python-publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/.github/workflows/python-publish.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/.gitignore -------------------------------------------------------------------------------- /.landscape.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/.landscape.yaml -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/README.md -------------------------------------------------------------------------------- /ci/.travis_install.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/ci/.travis_install.sh -------------------------------------------------------------------------------- /ci/.travis_test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/ci/.travis_test.sh -------------------------------------------------------------------------------- /data/GAMETES_Epistasis_2-Way_20atts_0.4H_EDM-1_1.tsv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/data/GAMETES_Epistasis_2-Way_20atts_0.4H_EDM-1_1.tsv.gz -------------------------------------------------------------------------------- /data/GAMETES_Epistasis_2-Way_continuous_endpoint_a_20s_1600her_0.4__maf_0.2_EDM-2_01.tsv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/data/GAMETES_Epistasis_2-Way_continuous_endpoint_a_20s_1600her_0.4__maf_0.2_EDM-2_01.tsv.gz -------------------------------------------------------------------------------- /images/mdr-logo.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/images/mdr-logo.jpg -------------------------------------------------------------------------------- /mdr/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/mdr/__init__.py -------------------------------------------------------------------------------- /mdr/_version.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/mdr/_version.py -------------------------------------------------------------------------------- /mdr/continuous_mdr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/mdr/continuous_mdr.py -------------------------------------------------------------------------------- /mdr/mdr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/mdr/mdr.py -------------------------------------------------------------------------------- /mdr/mdr_ensemble.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/mdr/mdr_ensemble.py -------------------------------------------------------------------------------- /mdr/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/mdr/utils/__init__.py -------------------------------------------------------------------------------- /mdr/utils/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/mdr/utils/utils.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/setup.py -------------------------------------------------------------------------------- /tests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/EpistasisLab/scikit-mdr/HEAD/tests.py --------------------------------------------------------------------------------