├── .gitignore ├── README.rst ├── medical_ts_datasets ├── __init__.py ├── checksums.py ├── checksums │ ├── physionet2012.txt │ └── physionet2019.txt ├── mimic_3_mortality.py ├── mimic_3_phenotyping.py ├── mimic_3_reader.py ├── physionet_2012.py ├── physionet_2019.py ├── resources │ ├── physionet2012 │ │ ├── test_listfile.csv │ │ ├── train_listfile.csv │ │ └── val_listfile.csv │ └── physionet2019 │ │ ├── test_listfile.csv │ │ ├── train_listfile.csv │ │ └── val_listfile.csv └── util.py ├── pyproject.toml ├── scripts ├── split_physionet2012_train_val_test.py └── split_physionet2019_train_val_test.py └── tests ├── __init__.py ├── fake_data ├── physionet_2012 │ ├── Outcomes-a.txt │ ├── Outcomes-b.txt │ ├── Outcomes-c.txt │ ├── set-a │ │ ├── 100000.txt │ │ └── 100001.txt │ ├── set-b │ │ ├── 100000.txt │ │ └── 100001.txt │ └── set-c │ │ ├── 100000.txt │ │ └── 100001.txt └── physionet_2019 │ ├── .DS_Store │ ├── training │ └── p000001.psv │ └── training_setB │ └── p100001.psv ├── physionet_2012_test.py ├── physionet_2019_test.py ├── test_medical_ts_datasets.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- 1 | __pycache__/ 2 | *.pyc 3 | medical_ts_datasets.egg-info/ 4 | -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/README.rst -------------------------------------------------------------------------------- /medical_ts_datasets/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/__init__.py -------------------------------------------------------------------------------- /medical_ts_datasets/checksums.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/checksums.py -------------------------------------------------------------------------------- /medical_ts_datasets/checksums/physionet2012.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/checksums/physionet2012.txt -------------------------------------------------------------------------------- /medical_ts_datasets/checksums/physionet2019.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/checksums/physionet2019.txt -------------------------------------------------------------------------------- /medical_ts_datasets/mimic_3_mortality.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/mimic_3_mortality.py -------------------------------------------------------------------------------- /medical_ts_datasets/mimic_3_phenotyping.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/mimic_3_phenotyping.py -------------------------------------------------------------------------------- /medical_ts_datasets/mimic_3_reader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/mimic_3_reader.py -------------------------------------------------------------------------------- /medical_ts_datasets/physionet_2012.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/physionet_2012.py -------------------------------------------------------------------------------- /medical_ts_datasets/physionet_2019.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/physionet_2019.py -------------------------------------------------------------------------------- /medical_ts_datasets/resources/physionet2012/test_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/resources/physionet2012/test_listfile.csv -------------------------------------------------------------------------------- /medical_ts_datasets/resources/physionet2012/train_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/resources/physionet2012/train_listfile.csv -------------------------------------------------------------------------------- /medical_ts_datasets/resources/physionet2012/val_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/resources/physionet2012/val_listfile.csv -------------------------------------------------------------------------------- /medical_ts_datasets/resources/physionet2019/test_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/resources/physionet2019/test_listfile.csv -------------------------------------------------------------------------------- /medical_ts_datasets/resources/physionet2019/train_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/resources/physionet2019/train_listfile.csv -------------------------------------------------------------------------------- /medical_ts_datasets/resources/physionet2019/val_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/resources/physionet2019/val_listfile.csv -------------------------------------------------------------------------------- /medical_ts_datasets/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/medical_ts_datasets/util.py -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/pyproject.toml -------------------------------------------------------------------------------- /scripts/split_physionet2012_train_val_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/scripts/split_physionet2012_train_val_test.py -------------------------------------------------------------------------------- /scripts/split_physionet2019_train_val_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/scripts/split_physionet2019_train_val_test.py -------------------------------------------------------------------------------- /tests/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/__init__.py -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/Outcomes-a.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/Outcomes-a.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/Outcomes-b.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/Outcomes-b.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/Outcomes-c.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/Outcomes-c.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/set-a/100000.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/set-a/100000.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/set-a/100001.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/set-a/100001.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/set-b/100000.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/set-b/100000.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/set-b/100001.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/set-b/100001.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/set-c/100000.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/set-c/100000.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2012/set-c/100001.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2012/set-c/100001.txt -------------------------------------------------------------------------------- /tests/fake_data/physionet_2019/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2019/.DS_Store -------------------------------------------------------------------------------- /tests/fake_data/physionet_2019/training/p000001.psv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2019/training/p000001.psv -------------------------------------------------------------------------------- /tests/fake_data/physionet_2019/training_setB/p100001.psv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/fake_data/physionet_2019/training_setB/p100001.psv -------------------------------------------------------------------------------- /tests/physionet_2012_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/physionet_2012_test.py -------------------------------------------------------------------------------- /tests/physionet_2019_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/physionet_2019_test.py -------------------------------------------------------------------------------- /tests/test_medical_ts_datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/test_medical_ts_datasets.py -------------------------------------------------------------------------------- /tests/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ExpectationMax/medical_ts_datasets/HEAD/tests/utils.py --------------------------------------------------------------------------------